Wall clock time and date at job start Thu Apr 9 2020 12:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.47202 * 109.47534 * 120.00226 * 2 1 3 5 5 N 2.60798 * 109.47438 * 120.00225 * 2 1 3 6 6 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 7 7 O 1.21282 * 119.99865 * 240.00203 * 6 2 1 8 8 N 1.34774 * 120.00164 * 59.99708 * 6 2 1 9 9 C 1.46496 * 120.00339 * 180.02562 * 8 6 2 10 10 H 1.09005 * 110.64139 * 323.31346 * 9 8 6 11 11 C 1.55160 * 110.72147 * 86.45078 * 9 8 6 12 12 C 1.54904 * 101.58200 * 153.86882 * 11 9 8 13 13 N 1.47426 * 104.83373 * 322.99169 * 12 11 9 14 14 C 1.36939 * 125.65140 * 204.16717 * 13 12 11 15 15 H 1.07994 * 119.99849 * 179.97438 * 14 13 12 16 16 C 1.38812 * 119.99706 * 359.97345 * 14 13 12 17 17 N 1.31615 * 120.00190 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99691 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46948 * 90.00198 * 18 16 14 20 20 H 1.48503 * 109.46898 * 209.99654 * 18 16 14 21 21 H 1.48489 * 109.47228 * 329.99975 * 18 16 14 22 22 C 1.47024 * 108.70034 * 24.12864 * 13 12 11 23 23 H 1.08998 * 109.88304 * 239.52512 * 22 13 12 24 24 C 1.52997 * 109.88251 * 118.36083 * 22 13 12 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97005 * 119.99795 * 359.97438 * 8 6 2 29 29 H 1.09000 * 111.00668 * 271.94926 * 11 9 8 30 30 H 1.09007 * 111.00265 * 35.75528 * 11 9 8 31 31 H 1.09000 * 110.37106 * 81.83009 * 12 11 9 32 32 H 1.09003 * 110.36582 * 204.04482 * 12 11 9 33 33 H 0.97005 * 120.00356 * 180.02562 * 17 16 14 34 34 H 1.09009 * 109.46907 * 302.18877 * 24 22 13 35 35 H 1.08999 * 109.47384 * 62.18421 * 24 22 13 36 36 H 1.08992 * 109.47378 * 182.19305 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2295 2.1293 6 6 2.0324 -0.7103 -1.2306 7 8 2.7296 -1.6964 -1.1193 8 7 1.7068 -0.2498 -2.4546 9 6 2.1946 -0.9406 -3.6508 10 1 3.2058 -1.3156 -3.4925 11 6 1.2368 -2.0952 -4.0470 12 6 1.4999 -2.2090 -5.5693 13 7 1.6968 -0.8203 -6.0232 14 6 1.4989 -0.3616 -7.2982 15 1 1.6711 0.6789 -7.5306 16 6 1.0770 -1.2342 -8.2920 17 7 0.8667 -2.5021 -8.0086 18 14 0.8078 -0.6087 -10.0314 19 1 2.0702 -0.7338 -10.8033 20 1 -0.2551 -1.4121 -10.6873 21 1 0.3942 0.8167 -9.9864 22 6 2.1399 -0.0090 -4.8799 23 1 1.4303 0.7988 -4.7013 24 6 3.5296 0.5673 -5.1583 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.1487 0.5386 -2.5436 29 1 1.5050 -3.0188 -3.5340 30 1 0.1990 -1.8276 -3.8482 31 1 2.3966 -2.7999 -5.7563 32 1 0.6410 -2.6555 -6.0704 33 1 0.5722 -3.1120 -8.7031 34 1 4.2277 -0.2465 -5.3546 35 1 3.4833 1.2238 -6.0271 36 1 3.8678 1.1350 -4.2915 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479699514.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:28:38 Heat of formation + Delta-G solvation = -10.399020 kcal Electronic energy + Delta-G solvation = -18501.351953 eV Core-core repulsion = 15599.339187 eV Total energy + Delta-G solvation = -2902.012766 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.24907 -39.33052 -37.60355 -35.65649 -34.50269 -33.36989 -31.98477 -30.33260 -26.77634 -25.92498 -25.63270 -22.54700 -21.58400 -21.47996 -18.90299 -18.67242 -18.19415 -17.15140 -16.49217 -16.31022 -15.71985 -15.47085 -15.02339 -14.88619 -14.29552 -14.09022 -13.95778 -13.72509 -13.68368 -13.19825 -13.17927 -12.87930 -12.74955 -12.71120 -12.55835 -12.35533 -12.15801 -12.04066 -11.92792 -11.51744 -11.39853 -10.87598 -10.69023 -10.01475 -8.84924 -7.70721 -5.15306 1.43625 1.51995 1.52824 1.53642 1.61420 1.75700 2.31554 2.56523 2.84347 3.40371 3.58450 3.80868 3.90948 3.98239 4.03279 4.24464 4.28642 4.57256 4.68966 4.73691 4.87336 4.90013 4.92780 5.01202 5.11669 5.19023 5.34494 5.42447 5.55607 5.65215 5.67438 5.85431 6.35279 6.44205 6.61362 7.15565 7.23933 7.84287 8.47238 9.31074 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.046452 B = 0.004668 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.625842 B = 5996.621014 C = 6086.375620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.001 3.999 3 H 0.193 0.807 4 C 0.243 3.757 5 N -0.478 5.478 6 C 0.522 3.478 7 O -0.586 6.586 8 N -0.690 5.690 9 C 0.153 3.847 10 H 0.076 0.924 11 C -0.138 4.138 12 C 0.155 3.845 13 N -0.614 5.614 14 C -0.223 4.223 15 H 0.088 0.912 16 C -0.069 4.069 17 N -0.952 5.952 18 Si 0.975 3.025 19 H -0.293 1.293 20 H -0.299 1.299 21 H -0.264 1.264 22 C 0.152 3.848 23 H 0.064 0.936 24 C -0.149 4.149 25 H 0.100 0.900 26 H 0.053 0.947 27 H 0.111 0.889 28 H 0.423 0.577 29 H 0.059 0.941 30 H 0.077 0.923 31 H -0.021 1.021 32 H 0.076 0.924 33 H 0.244 0.756 34 H 0.029 0.971 35 H 0.047 0.953 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.840 11.335 12.537 17.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 H 0.210 0.790 4 C -0.075 4.075 5 N -0.154 5.154 6 C 0.307 3.693 7 O -0.465 6.465 8 N -0.342 5.342 9 C 0.047 3.953 10 H 0.094 0.906 11 C -0.178 4.178 12 C 0.029 3.971 13 N -0.339 5.339 14 C -0.352 4.352 15 H 0.106 0.894 16 C -0.261 4.261 17 N -0.602 5.602 18 Si 0.804 3.196 19 H -0.221 1.221 20 H -0.225 1.225 21 H -0.189 1.189 22 C 0.045 3.955 23 H 0.082 0.918 24 C -0.209 4.209 25 H 0.119 0.881 26 H 0.072 0.928 27 H 0.129 0.871 28 H 0.262 0.738 29 H 0.078 0.922 30 H 0.096 0.904 31 H -0.003 1.003 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.848 9.797 13.814 17.036 hybrid contribution -0.100 -0.071 -1.664 1.668 sum -1.947 9.726 12.150 15.684 Atomic orbital electron populations 1.21913 0.87212 1.04104 1.06846 1.19156 1.00311 1.01315 0.81483 0.79009 1.28884 0.92091 0.92579 0.93926 1.81186 1.09907 1.09710 1.14598 1.20597 0.79518 0.84030 0.85125 1.90788 1.40050 1.28433 1.87252 1.45650 1.52786 1.32034 1.03702 1.21711 0.97420 0.92364 0.83843 0.90580 1.23187 0.99763 0.98189 0.96641 1.21667 0.98776 0.86234 0.90375 1.44725 1.78289 1.05459 1.05436 1.19414 1.36470 0.94540 0.84812 0.89394 1.25576 1.02804 0.95896 1.01871 1.70048 1.54196 1.03821 1.32171 0.85114 0.76697 0.77783 0.79968 1.22075 1.22548 1.18876 1.21222 0.95138 0.92887 0.86234 0.91824 1.22159 0.97187 1.00047 1.01464 0.88094 0.92785 0.87069 0.73822 0.92226 0.90404 1.00275 0.90572 0.94621 0.95133 0.93429 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.04 71.98 0.65 -0.32 16 2 C 0.00 0.01 3.10 -13.34 -0.04 -0.03 16 3 H 0.19 0.38 8.14 -2.39 -0.02 0.36 16 4 C 0.24 5.31 13.88 89.44 1.24 6.55 16 5 N -0.48 -13.88 18.54 20.01 0.37 -13.51 16 6 C 0.52 11.42 7.14 87.66 0.63 12.05 16 7 O -0.59 -19.92 15.75 -3.04 -0.05 -19.96 16 8 N -0.69 -13.87 5.10 -436.92 -2.23 -16.09 16 9 C 0.15 4.74 2.76 46.18 0.13 4.87 16 10 H 0.08 2.69 7.41 -2.38 -0.02 2.67 16 11 C -0.14 -5.06 6.77 31.99 0.22 -4.84 16 12 C 0.16 7.47 5.89 86.85 0.51 7.98 16 13 N -0.61 -28.86 3.13 -668.28 -2.09 -30.95 16 14 C -0.22 -11.58 9.89 84.03 0.83 -10.75 16 15 H 0.09 4.28 7.83 -2.91 -0.02 4.26 16 16 C -0.07 -3.77 5.49 84.86 0.47 -3.30 16 17 N -0.95 -55.53 10.09 21.65 0.22 -55.32 16 18 Si 0.98 43.98 29.55 68.60 2.03 46.01 16 19 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 21 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 22 C 0.15 5.22 3.48 45.34 0.16 5.38 16 23 H 0.06 1.91 7.69 -2.39 -0.02 1.89 16 24 C -0.15 -4.79 9.14 71.98 0.66 -4.13 16 25 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.11 0.25 7.56 -2.38 -0.02 0.23 16 28 H 0.42 4.99 7.73 -92.70 -0.72 4.27 16 29 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 31 H -0.02 -1.12 8.14 -2.39 -0.02 -1.13 16 32 H 0.08 4.19 5.87 -2.39 -0.01 4.18 16 33 H 0.24 13.99 8.31 -92.70 -0.77 13.22 16 34 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.05 1.59 8.04 -2.39 -0.02 1.57 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -76.24 305.62 4.06 -72.18 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 0.37 Total: 4.19 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 5.44 Total: 13.46 kcal Atomic # 7 Polarization: -112.14 SS G_CDS: -3.73 Total: -115.87 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.05 Total: -19.96 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -76.24 4.06 -72.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479699514.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.779 kcal (2) G-P(sol) polarization free energy of solvation -76.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds