Wall clock time and date at job start Thu Apr 9 2020 12:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 N 1.46504 * 109.46930 * 120.00198 * 2 1 3 5 5 C 1.34777 * 119.99854 * 274.99613 * 4 2 1 6 6 O 1.21633 * 119.99979 * 0.02562 * 5 4 2 7 7 C 1.47264 * 119.99990 * 180.27781 * 5 4 2 8 8 C 1.46687 * 126.94155 * 359.41111 * 7 5 4 9 9 C 1.34487 * 106.33076 * 179.82743 * 8 7 5 10 10 N 1.36444 * 108.85737 * 0.43868 * 9 8 7 11 11 H 0.97006 * 124.85477 * 179.68456 * 10 9 8 12 12 C 1.34659 * 110.29637 * 359.70801 * 10 9 8 13 13 C 1.52994 * 109.47180 * 239.99796 * 2 1 3 14 14 H 1.09002 * 109.47707 * 300.00375 * 13 2 1 15 15 C 1.53006 * 109.47216 * 179.97438 * 13 2 1 16 16 N 1.46499 * 109.47171 * 60.00209 * 13 2 1 17 17 C 1.36938 * 120.00482 * 204.99835 * 16 13 2 18 18 H 1.08002 * 119.99428 * 0.02562 * 17 16 13 19 19 C 1.38811 * 120.00371 * 179.97438 * 17 16 13 20 20 N 1.31624 * 119.99694 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00069 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47595 * 59.99815 * 21 19 17 23 23 H 1.48502 * 109.47314 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46816 * 299.99642 * 21 19 17 25 25 H 1.09000 * 109.47470 * 299.99796 * 1 2 3 26 26 H 1.08998 * 109.47338 * 59.99872 * 1 2 3 27 27 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 28 28 H 0.97000 * 120.00410 * 95.00338 * 4 2 1 29 29 H 1.07995 * 126.83260 * 359.97438 * 8 7 5 30 30 H 1.07998 * 125.57093 * 180.14324 * 9 8 7 31 31 H 1.08009 * 125.79719 * 179.97438 * 12 10 9 32 32 H 1.08996 * 109.47059 * 180.02562 * 15 13 2 33 33 H 1.09001 * 109.47072 * 300.00283 * 15 13 2 34 34 H 1.08998 * 109.46686 * 60.00437 * 15 13 2 35 35 H 0.97000 * 120.00069 * 24.99504 * 16 13 2 36 36 H 0.96999 * 119.99735 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8574 1.1618 2.4119 7 6 2.6437 -0.7110 3.5580 8 6 3.0286 -2.1224 3.6658 9 6 3.4214 -2.3111 4.9381 10 7 3.2983 -1.1339 5.6169 11 1 3.5144 -1.0093 6.5543 12 6 2.8335 -0.1699 4.7997 13 6 2.0400 -0.7213 -1.2492 14 1 1.6766 -1.7489 -1.2493 15 6 3.5700 -0.7207 -1.2495 16 7 1.5517 -0.0307 -2.4454 17 6 1.4209 -0.7137 -3.6250 18 1 1.6774 -1.7618 -3.6733 19 6 0.9578 -0.0595 -4.7583 20 7 0.6438 1.2174 -4.6988 21 14 0.7787 -0.9915 -6.3671 22 1 -0.1763 -2.1140 -6.1855 23 1 0.2687 -0.0734 -7.4170 24 1 2.1010 -1.5282 -6.7780 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 2.2490 -1.6318 1.1527 29 1 3.0040 -2.8620 2.8793 30 1 3.7720 -3.2434 5.3556 31 1 2.6427 0.8562 5.0776 32 1 3.9333 -1.2342 -2.1397 33 1 3.9330 0.3071 -1.2497 34 1 3.9336 -1.2343 -0.3595 35 1 1.3209 0.9105 -2.4018 36 1 0.3198 1.6744 -5.4907 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505611003.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:29:01 Heat of formation + Delta-G solvation = 14.689048 kcal Electronic energy + Delta-G solvation = -18128.321183 eV Core-core repulsion = 15227.396317 eV Total energy + Delta-G solvation = -2900.924866 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.18531 -39.04257 -36.49812 -33.77838 -31.89573 -30.96750 -29.42814 -28.96112 -28.28912 -23.93716 -23.67570 -21.75675 -20.83781 -19.89005 -19.30720 -18.74366 -17.30104 -15.94503 -15.42580 -14.81680 -14.54071 -14.06436 -13.93115 -13.58998 -13.53733 -13.18781 -13.10143 -12.91227 -12.33997 -12.15939 -11.73820 -11.56723 -11.07750 -10.87046 -10.77686 -10.58700 -10.19284 -9.79820 -9.72433 -9.50869 -9.01290 -8.91794 -8.63153 -8.41817 -6.92984 -5.72497 -3.01677 1.80025 2.30420 3.00358 3.46704 3.50707 3.52156 3.71208 3.78964 4.63891 4.77858 4.98818 5.13939 5.32892 5.45429 5.56164 5.71116 5.79590 5.86231 5.94410 6.02058 6.20837 6.36920 6.50811 6.53897 6.57418 6.64879 6.74412 6.77628 6.91527 7.08881 7.14808 7.24978 7.72710 7.97192 8.45295 8.67035 9.56525 10.13037 10.48287 11.49977 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.048712 B = 0.004169 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.667944 B = 6715.202767 C = 6993.644504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.137 3.863 3 H 0.084 0.916 4 N -0.712 5.712 5 C 0.587 3.413 6 O -0.557 6.557 7 C -0.228 4.228 8 C -0.169 4.169 9 C -0.022 4.022 10 N -0.557 5.557 11 H 0.416 0.584 12 C 0.069 3.931 13 C 0.169 3.831 14 H 0.050 0.950 15 C -0.164 4.164 16 N -0.718 5.718 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.287 1.287 25 H 0.046 0.954 26 H 0.079 0.921 27 H 0.049 0.951 28 H 0.396 0.604 29 H 0.145 0.855 30 H 0.167 0.833 31 H 0.176 0.824 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.036 0.964 35 H 0.385 0.615 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 -7.419 20.694 22.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.032 3.968 3 H 0.102 0.898 4 N -0.362 5.362 5 C 0.375 3.625 6 O -0.437 6.437 7 C -0.238 4.238 8 C -0.194 4.194 9 C -0.149 4.149 10 N -0.151 5.151 11 H 0.252 0.748 12 C -0.067 4.067 13 C 0.058 3.942 14 H 0.068 0.932 15 C -0.224 4.224 16 N -0.360 5.360 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 H 0.065 0.935 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.230 0.770 29 H 0.163 0.837 30 H 0.185 0.815 31 H 0.193 0.807 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.219 0.781 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.287 -6.701 20.666 22.359 hybrid contribution 0.106 -0.664 -0.556 0.873 sum 5.393 -7.365 20.110 22.085 Atomic orbital electron populations 1.22047 0.95109 1.01650 1.02205 1.21293 0.94319 0.97561 0.83614 0.89798 1.45843 1.66975 1.13805 1.09542 1.17362 0.76977 0.85848 0.82345 1.90764 1.51864 1.15754 1.85272 1.20514 1.14139 0.94761 0.94350 1.22107 1.05514 0.95146 0.96599 1.21759 1.09416 0.90339 0.93399 1.41633 1.52191 1.09069 1.12253 0.74771 1.21842 1.00370 0.94561 0.89913 1.20392 0.92085 0.95533 0.86179 0.93248 1.22435 0.99067 1.01098 0.99779 1.42292 1.78208 1.10702 1.04839 1.19160 1.36737 0.93835 0.87174 0.91227 1.24730 1.02142 0.95965 0.98003 1.69657 1.50683 1.08647 1.28991 0.86275 0.77718 0.78579 0.83636 1.21314 1.21756 1.21340 0.93470 0.90256 0.93187 0.76988 0.83685 0.81536 0.80662 0.92778 0.93458 0.94456 0.78052 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.33 37.16 0.35 -2.46 16 2 C 0.14 2.51 2.21 -67.93 -0.15 2.36 16 3 H 0.08 1.73 7.58 -51.93 -0.39 1.33 16 4 N -0.71 -10.93 4.38 -54.93 -0.24 -11.17 16 5 C 0.59 9.58 7.77 -12.59 -0.10 9.48 16 6 O -0.56 -11.08 16.58 5.25 0.09 -10.99 16 7 C -0.23 -2.93 6.29 -103.35 -0.65 -3.58 16 8 C -0.17 -1.71 10.56 -37.50 -0.40 -2.11 16 9 C -0.02 -0.16 11.89 -16.83 -0.20 -0.36 16 10 N -0.56 -3.94 5.90 -12.85 -0.08 -4.02 16 11 H 0.42 1.43 8.96 -40.82 -0.37 1.06 16 12 C 0.07 0.72 11.69 -16.84 -0.20 0.52 16 13 C 0.17 3.36 2.52 -67.93 -0.17 3.19 16 14 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 15 C -0.16 -3.03 9.33 37.16 0.35 -2.68 16 16 N -0.72 -17.91 4.43 -53.43 -0.24 -18.15 16 17 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -28.20 13.06 55.49 0.72 -27.47 16 21 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 1.64 7.45 -51.93 -0.39 1.25 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.40 5.10 7.51 -40.82 -0.31 4.79 16 29 H 0.15 1.23 7.69 -52.49 -0.40 0.83 16 30 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 31 H 0.18 1.60 8.06 -52.48 -0.42 1.17 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.04 0.58 7.45 -51.93 -0.39 0.19 16 35 H 0.39 10.34 7.58 -40.82 -0.31 10.03 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 309.36 15.07 4.66 4.66 Total: -1.00 -33.84 309.36 -6.57 -40.41 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -5.05 Total: 12.16 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -1.41 Total: -2.78 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: 0.17 Total: -60.81 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.84 -6.57 -40.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505611003.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.104 kcal (2) G-P(sol) polarization free energy of solvation -33.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds