Wall clock time and date at job start Thu Apr 9 2020 12:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 5 5 C 1.36940 * 120.00276 * 274.99870 * 4 2 1 6 6 H 1.08002 * 119.99359 * 0.02562 * 5 4 2 7 7 C 1.38803 * 120.00232 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00221 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00226 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47360 * 89.99777 * 9 7 5 11 11 H 1.48498 * 109.47518 * 209.99876 * 9 7 5 12 12 H 1.48507 * 109.46892 * 329.99954 * 9 7 5 13 13 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 14 14 H 1.09001 * 109.46992 * 174.99449 * 13 2 1 15 15 C 1.52996 * 109.47276 * 294.99872 * 13 2 1 16 16 N 1.46510 * 109.47089 * 54.99980 * 13 2 1 17 17 C 1.34774 * 119.99669 * 154.99962 * 16 13 2 18 18 O 1.21627 * 120.00226 * 359.97438 * 17 16 13 19 19 C 1.47265 * 119.99734 * 180.02562 * 17 16 13 20 20 C 1.46693 * 126.94132 * 359.67809 * 19 17 16 21 21 C 1.34490 * 106.32996 * 179.83105 * 20 19 17 22 22 N 1.36443 * 108.85876 * 0.44093 * 21 20 19 23 23 H 0.96998 * 124.85327 * 179.68421 * 22 21 20 24 24 C 1.34668 * 110.29568 * 359.70869 * 22 21 20 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.97003 * 119.99825 * 95.00368 * 4 2 1 29 29 H 0.97001 * 120.00480 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.46912 * 60.00396 * 15 13 2 31 31 H 1.09004 * 109.47120 * 180.02562 * 15 13 2 32 32 H 1.08998 * 109.47375 * 300.00219 * 15 13 2 33 33 H 0.96996 * 119.99772 * 335.00277 * 16 13 2 34 34 H 1.08002 * 126.83230 * 0.02562 * 20 19 17 35 35 H 1.08001 * 125.56580 * 180.14590 * 21 20 19 36 36 H 1.08004 * 125.80122 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0076 2.3758 6 1 1.8919 1.0402 2.4243 7 6 2.6123 -0.6619 3.5089 8 7 2.7376 -0.0055 4.6429 9 14 3.0579 -2.4739 3.4247 10 1 4.4907 -2.6150 3.0608 11 1 2.8189 -3.1046 4.7477 12 1 2.2183 -3.1429 2.3985 13 6 2.0401 -0.7212 -1.2492 14 1 3.1264 -0.6441 -1.2952 15 6 1.6354 -2.1954 -1.1881 16 7 1.4559 -0.1035 -2.4424 17 6 2.0913 -0.1936 -3.6275 18 8 3.1499 -0.7872 -3.7064 19 6 1.5044 0.4278 -4.8268 20 6 0.2418 1.1703 -4.9068 21 6 0.1099 1.5551 -6.1887 22 7 1.1828 1.1000 -6.8983 23 1 1.3203 1.2428 -7.8478 24 6 2.0234 0.4240 -6.0921 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 2.2491 -1.6318 1.1525 29 1 3.0616 -0.4626 5.4347 30 1 0.5490 -2.2723 -1.1422 31 1 1.9991 -2.7092 -2.0779 32 1 2.0699 -2.6549 -0.3004 33 1 0.6119 0.3703 -2.3794 34 1 -0.4437 1.3710 -4.0967 35 1 -0.7133 2.1264 -6.5916 36 1 2.9497 -0.0424 -6.3937 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505611005.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:29:03 Heat of formation + Delta-G solvation = -3.167461 kcal Electronic energy + Delta-G solvation = -18215.485269 eV Core-core repulsion = 15313.786086 eV Total energy + Delta-G solvation = -2901.699182 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.96312 -40.44851 -38.37439 -35.59637 -33.73270 -32.23065 -30.89836 -30.07862 -29.84796 -26.11984 -25.23437 -23.36398 -21.53599 -20.68049 -20.66643 -19.86020 -19.52586 -17.17395 -16.89426 -16.63317 -15.99748 -15.68463 -15.51001 -15.02993 -14.69896 -14.60716 -14.44270 -14.04666 -13.84316 -13.65334 -13.21197 -13.10656 -12.97000 -12.85504 -12.64920 -12.15627 -11.93562 -11.77430 -11.58004 -10.99352 -10.93119 -10.11179 -9.67634 -9.34067 -9.24012 -8.01379 -5.34959 0.83425 1.38121 1.41482 1.47647 1.61565 2.17642 2.49006 2.62859 2.64506 3.30204 3.66672 3.82226 4.04965 4.09219 4.22446 4.31353 4.44950 4.57265 4.59005 4.66818 4.85363 4.94207 4.99724 5.04701 5.15451 5.20060 5.25970 5.58136 5.61360 5.78871 5.81561 6.00586 6.22433 6.66847 6.78542 7.08096 7.40312 7.83444 8.02330 9.20026 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.044138 B = 0.004507 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.214776 B = 6211.486967 C = 6506.981187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.169 3.831 3 H 0.047 0.953 4 N -0.748 5.748 5 C -0.227 4.227 6 H 0.061 0.939 7 C -0.061 4.061 8 N -0.983 5.983 9 Si 0.946 3.054 10 H -0.282 1.282 11 H -0.293 1.293 12 H -0.250 1.250 13 C 0.146 3.854 14 H 0.061 0.939 15 C -0.155 4.155 16 N -0.704 5.704 17 C 0.583 3.417 18 O -0.601 6.601 19 C -0.269 4.269 20 C -0.190 4.190 21 C -0.003 4.003 22 N -0.538 5.538 23 H 0.436 0.564 24 C 0.073 3.927 25 H 0.059 0.941 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.366 0.634 29 H 0.258 0.742 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.411 0.589 34 H 0.157 0.843 35 H 0.207 0.793 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.446 1.382 -26.737 28.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.061 3.939 3 H 0.065 0.935 4 N -0.393 5.393 5 C -0.358 4.358 6 H 0.079 0.921 7 C -0.252 4.252 8 N -0.634 5.634 9 Si 0.773 3.227 10 H -0.208 1.208 11 H -0.220 1.220 12 H -0.175 1.175 13 C 0.040 3.960 14 H 0.079 0.921 15 C -0.213 4.213 16 N -0.356 5.356 17 C 0.373 3.627 18 O -0.484 6.484 19 C -0.279 4.279 20 C -0.214 4.214 21 C -0.131 4.131 22 N -0.133 5.133 23 H 0.276 0.724 24 C -0.066 4.066 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.201 0.799 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.249 0.751 34 H 0.174 0.826 35 H 0.224 0.776 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -7.745 1.194 -26.780 27.903 hybrid contribution 0.360 -0.693 0.522 0.939 sum -7.385 0.501 -26.258 27.282 Atomic orbital electron populations 1.22333 0.96129 1.02085 1.01275 1.20491 0.94116 0.94935 0.84389 0.93531 1.42802 1.80254 1.09618 1.06674 1.19025 1.35081 0.94569 0.87151 0.92135 1.25413 1.02331 1.02270 0.95221 1.69867 1.54683 1.37638 1.01163 0.85554 0.78608 0.81301 0.77239 1.20817 1.22000 1.17459 1.20911 0.97682 0.93216 0.84225 0.92114 1.22109 1.02719 0.95180 1.01298 1.45765 1.26156 1.56667 1.07037 1.17942 0.83095 0.78265 0.83362 1.90726 1.24737 1.46399 1.86586 1.20399 1.01251 1.13015 0.93258 1.22337 0.97100 1.03704 0.98244 1.22357 0.94108 1.04843 0.91772 1.41674 1.17736 1.41883 1.12047 0.72383 1.21959 0.96905 0.98030 0.89698 0.92175 0.93977 0.90444 0.79857 0.93353 0.90483 0.92695 0.92633 0.75056 0.82557 0.77637 0.80085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.00 9.01 71.98 0.65 -4.35 16 2 C 0.17 6.42 2.93 44.99 0.13 6.55 16 3 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 4 N -0.75 -35.26 4.84 -322.95 -1.56 -36.82 16 5 C -0.23 -13.04 10.41 84.03 0.87 -12.16 16 6 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 7 C -0.06 -3.63 5.50 84.86 0.47 -3.17 16 8 N -0.98 -63.64 13.97 21.65 0.30 -63.34 16 9 Si 0.95 46.32 27.74 68.60 1.90 48.22 16 10 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 11 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 12 H -0.25 -11.03 6.52 99.48 0.65 -10.38 16 13 C 0.15 4.99 2.62 44.99 0.12 5.11 16 14 H 0.06 2.44 7.58 -2.39 -0.02 2.42 16 15 C -0.15 -4.94 9.00 71.98 0.65 -4.30 16 16 N -0.70 -20.05 4.99 -445.94 -2.22 -22.27 16 17 C 0.58 18.15 7.77 86.62 0.67 18.83 16 18 O -0.60 -23.47 16.57 -4.12 -0.07 -23.54 16 19 C -0.27 -6.31 6.29 -19.04 -0.12 -6.43 16 20 C -0.19 -3.17 10.56 23.62 0.25 -2.92 16 21 C 0.00 -0.03 11.89 83.12 0.99 0.96 16 22 N -0.54 -5.36 5.90 -194.55 -1.15 -6.51 16 23 H 0.44 1.00 8.96 -92.71 -0.83 0.16 16 24 C 0.07 1.30 11.69 83.91 0.98 2.28 16 25 H 0.06 1.82 6.56 -2.39 -0.02 1.80 16 26 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.08 1.79 6.29 -2.39 -0.02 1.78 16 28 H 0.37 16.75 3.63 -92.71 -0.34 16.41 16 29 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 30 H 0.08 2.17 6.56 -2.39 -0.02 2.15 16 31 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.05 1.89 6.29 -2.39 -0.02 1.87 16 33 H 0.41 9.36 5.70 -92.71 -0.53 8.83 16 34 H 0.16 2.09 7.70 -2.91 -0.02 2.07 16 35 H 0.21 0.54 8.06 -2.91 -0.02 0.51 16 36 H 0.18 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -78.30 298.54 2.23 -76.08 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: -0.63 Total: 27.79 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 5.66 Total: 0.40 kcal Atomic # 7 Polarization: -124.31 SS G_CDS: -4.63 Total: -128.94 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.07 Total: -23.54 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.90 Total: 48.22 kcal Total: -78.30 2.23 -76.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505611005.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.909 kcal (2) G-P(sol) polarization free energy of solvation -78.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds