Wall clock time and date at job start Thu Apr 9 2020 12:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.46872 * 2 1 4 4 C 1.37105 * 119.99626 * 264.85438 * 3 2 1 5 5 H 1.08002 * 119.99266 * 146.19730 * 4 3 2 6 6 C 1.38947 * 120.00318 * 326.20012 * 4 3 2 7 7 N 1.31412 * 119.99648 * 337.52108 * 6 4 3 8 8 Si 1.86794 * 120.00016 * 157.52263 * 6 4 3 9 9 H 1.48498 * 109.47254 * 59.99703 * 8 6 4 10 10 H 1.48498 * 109.47247 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47293 * 299.99856 * 8 6 4 12 12 C 1.34774 * 119.99964 * 84.85897 * 3 2 1 13 13 O 1.21295 * 119.99908 * 179.97438 * 12 3 2 14 14 C 1.50696 * 120.00329 * 359.72636 * 12 3 2 15 15 C 1.52998 * 109.47243 * 179.97438 * 14 12 3 16 16 C 1.50706 * 109.46854 * 179.97438 * 15 14 12 17 17 C 1.34672 * 126.59112 * 85.02714 * 16 15 14 18 18 N 1.34124 * 108.01700 * 179.97438 * 17 16 15 19 19 C 1.30494 * 109.26049 * 359.97438 * 18 17 16 20 20 N 1.35042 * 108.70105 * 359.76619 * 19 18 17 21 21 C 1.46499 * 126.40307 * 180.26725 * 20 19 18 22 22 H 1.08996 * 109.46909 * 300.00212 * 1 2 3 23 23 H 1.08999 * 109.46866 * 60.00225 * 1 2 3 24 24 H 1.09002 * 109.46841 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46909 * 239.99788 * 2 1 3 26 26 H 1.08999 * 109.46866 * 119.99775 * 2 1 3 27 27 H 0.97002 * 119.99592 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.46897 * 299.99881 * 14 12 3 29 29 H 1.08996 * 109.47324 * 59.99549 * 14 12 3 30 30 H 1.09000 * 109.47225 * 299.99268 * 15 14 12 31 31 H 1.09003 * 109.47275 * 59.99936 * 15 14 12 32 32 H 1.07994 * 125.98752 * 359.95467 * 17 16 15 33 33 H 1.08009 * 125.65210 * 179.97438 * 19 18 17 34 34 H 1.09005 * 109.47489 * 270.12408 * 21 20 19 35 35 H 1.08997 * 109.46852 * 30.12009 * 21 20 19 36 36 H 1.08991 * 109.47411 * 150.11969 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3472 1.9920 -1.1826 5 1 2.1795 3.0515 -1.3080 6 6 2.8961 1.2479 -2.2198 7 7 3.5034 0.1111 -1.9630 8 14 2.7707 1.8634 -3.9789 9 1 3.4414 3.1835 -4.0905 10 1 3.4309 0.8947 -4.8905 11 1 1.3406 2.0015 -4.3543 12 6 2.1443 2.0514 1.1625 13 8 2.5490 3.1948 1.1625 14 6 1.7771 1.3821 2.4618 15 6 2.0121 2.3536 3.6201 16 6 1.6442 1.6844 4.9194 17 6 2.4345 0.8876 5.6640 18 7 1.7347 0.4975 6.7396 19 6 0.5411 1.0226 6.6902 20 7 0.4449 1.7750 5.5729 21 6 -0.7254 2.5422 5.1395 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.8862 -0.4085 -2.6871 28 1 0.7265 1.0928 2.4372 29 1 2.3950 0.4951 2.6009 30 1 3.0628 2.6424 3.6447 31 1 1.3944 3.2409 3.4812 32 1 3.4530 0.6111 5.4349 33 1 -0.2395 0.8818 7.4234 34 1 -1.3597 1.9149 4.5132 35 1 -1.2885 2.8705 6.0132 36 1 -0.3990 3.4122 4.5699 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331070472.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:27:42 Heat of formation + Delta-G solvation = 23.923979 kcal Electronic energy + Delta-G solvation = -18507.350868 eV Core-core repulsion = 15606.826459 eV Total energy + Delta-G solvation = -2900.524409 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.96765 -38.60882 -35.12976 -34.05328 -33.18216 -31.94957 -29.47311 -28.59527 -26.96710 -25.42388 -23.51043 -22.15646 -21.30283 -19.74062 -18.66902 -17.05947 -16.73208 -15.84912 -15.60706 -15.19346 -14.67498 -14.20514 -14.10014 -13.52763 -13.07073 -12.96160 -12.93163 -12.77887 -12.61062 -12.17884 -11.88092 -11.54354 -11.49858 -11.04926 -10.93711 -10.78123 -10.37303 -10.27919 -10.08117 -9.81197 -9.49458 -8.94469 -8.48722 -8.11364 -7.49931 -6.33621 -3.94578 2.14085 2.84934 3.18241 3.24820 3.27620 3.29401 3.90843 4.15030 4.65634 4.71265 4.76702 4.98162 5.02159 5.07822 5.26779 5.37554 5.54276 5.62140 5.81343 5.84525 5.89772 6.05090 6.16310 6.24466 6.35827 6.47118 6.52034 6.63643 6.87208 6.89123 7.26339 7.27460 7.59028 8.17491 8.23767 8.50567 9.18507 9.42240 10.01669 10.70058 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.038926 B = 0.004920 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.133844 B = 5689.119865 C = 5718.109123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.439 5.439 4 C -0.309 4.309 5 H 0.091 0.909 6 C 0.036 3.964 7 N -0.869 5.869 8 Si 0.917 3.083 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.456 3.544 13 O -0.587 6.587 14 C -0.126 4.126 15 C -0.026 4.026 16 C -0.009 4.009 17 C -0.032 4.032 18 N -0.495 5.495 19 C 0.166 3.834 20 N -0.460 5.460 21 C 0.070 3.930 22 H 0.040 0.960 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.113 0.887 26 H 0.048 0.952 27 H 0.268 0.732 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.169 0.831 33 H 0.201 0.799 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.882 -0.331 10.189 13.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.030 4.030 3 N -0.158 5.158 4 C -0.437 4.437 5 H 0.109 0.891 6 C -0.168 4.168 7 N -0.507 5.507 8 Si 0.744 3.256 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.200 1.200 12 C 0.244 3.756 13 O -0.471 6.471 14 C -0.166 4.166 15 C -0.065 4.065 16 C -0.123 4.123 17 C -0.179 4.179 18 N -0.213 5.213 19 C -0.115 4.115 20 N -0.144 5.144 21 C -0.073 4.073 22 H 0.059 0.941 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.131 0.869 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.186 0.814 33 H 0.218 0.782 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.413 -0.362 10.640 13.569 hybrid contribution -0.499 0.520 -1.471 1.638 sum -8.913 0.158 9.169 12.788 Atomic orbital electron populations 1.22197 0.98368 1.00277 1.01286 1.21592 0.91612 0.85573 1.04179 1.43531 1.55511 1.11821 1.04943 1.19416 1.40010 0.95416 0.88860 0.89092 1.25321 0.94502 0.96514 1.00498 1.69921 1.32434 1.15364 1.32975 0.86146 0.78588 0.78779 0.82102 1.19747 1.20973 1.19968 1.20264 0.82570 0.87940 0.84840 1.90512 1.50827 1.18850 1.86934 1.21588 1.02174 0.99371 0.93499 1.19775 1.03398 0.96763 0.86533 1.21553 0.86527 1.05504 0.98764 1.22073 1.00717 1.01991 0.93162 1.70226 1.03468 1.24355 1.23263 1.24819 0.97908 0.97109 0.91668 1.45309 1.12080 1.37512 1.19484 1.22041 0.86566 0.96839 1.01806 0.94144 0.92472 0.93142 0.86916 0.93337 0.92162 0.90918 0.89827 0.88926 0.90937 0.81412 0.78250 0.90473 0.89634 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 10.15 37.16 0.38 -2.53 16 2 C 0.09 2.04 5.44 -4.04 -0.02 2.02 16 3 N -0.44 -10.98 2.56 -114.81 -0.29 -11.28 16 4 C -0.31 -8.50 8.98 -14.93 -0.13 -8.64 16 5 H 0.09 2.62 7.70 -52.49 -0.40 2.21 16 6 C 0.04 0.93 4.92 -17.47 -0.09 0.85 16 7 N -0.87 -23.25 11.34 55.50 0.63 -22.62 16 8 Si 0.92 20.40 29.61 -169.99 -5.03 15.37 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 12 C 0.46 10.85 7.59 -10.99 -0.08 10.77 16 13 O -0.59 -15.92 15.81 5.54 0.09 -15.84 16 14 C -0.13 -2.27 4.29 -27.89 -0.12 -2.39 16 15 C -0.03 -0.42 4.84 -27.88 -0.14 -0.55 16 16 C -0.01 -0.13 6.21 -81.60 -0.51 -0.64 16 17 C -0.03 -0.50 11.79 -17.81 -0.21 -0.71 16 18 N -0.50 -7.68 11.25 -14.67 -0.16 -7.85 16 19 C 0.17 2.06 12.56 -90.38 -1.14 0.92 16 20 N -0.46 -5.69 3.15 -121.36 -0.38 -6.07 16 21 C 0.07 0.60 11.00 59.85 0.66 1.26 16 22 H 0.04 0.67 6.59 -51.93 -0.34 0.32 16 23 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.11 2.70 5.35 -51.93 -0.28 2.42 16 26 H 0.05 0.96 6.66 -51.93 -0.35 0.62 16 27 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.07 1.21 6.54 -51.93 -0.34 0.87 16 29 H 0.08 1.48 7.40 -51.93 -0.38 1.10 16 30 H 0.09 1.58 8.10 -51.93 -0.42 1.16 16 31 H 0.07 1.17 7.04 -51.93 -0.37 0.80 16 32 H 0.17 2.38 8.06 -52.49 -0.42 1.96 16 33 H 0.20 1.62 8.06 -52.48 -0.42 1.20 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.78 7.11 -51.93 -0.37 0.41 16 LS Contribution 302.28 15.07 4.56 4.56 Total: -1.00 -32.79 302.28 -6.92 -39.71 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -4.92 Total: 3.66 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -1.40 Total: 0.37 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -0.21 Total: -47.82 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: 0.09 Total: -15.84 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.79 -6.92 -39.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331070472.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.632 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds