Wall clock time and date at job start Thu Apr 9 2020 12:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47116 * 59.99536 * 8 6 4 10 10 H 1.48500 * 109.46585 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46730 * 299.99515 * 8 6 4 12 12 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 13 13 C 1.46907 * 110.99769 * 306.04832 * 12 2 1 14 14 C 1.46896 * 111.00152 * 69.99914 * 12 2 1 15 15 C 1.50706 * 109.47293 * 170.00150 * 14 12 2 16 16 N 1.31064 * 126.66162 * 90.02745 * 15 14 12 17 17 N 1.28833 * 107.99217 * 179.97438 * 16 15 14 18 18 N 1.28736 * 109.39800 * 359.97438 * 17 16 15 19 19 N 1.29018 * 108.80987 * 359.75272 * 18 17 16 20 20 C 1.46494 * 126.44087 * 180.24428 * 19 18 17 21 21 C 1.52993 * 117.50178 * 8.79792 * 20 19 18 22 22 C 1.52995 * 60.00393 * 252.50856 * 21 20 19 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 27 27 H 1.08995 * 109.47407 * 59.99898 * 13 12 2 28 28 H 1.09006 * 109.46770 * 179.97438 * 13 12 2 29 29 H 1.09003 * 109.46848 * 299.99626 * 13 12 2 30 30 H 1.09006 * 109.47466 * 290.00215 * 14 12 2 31 31 H 1.09000 * 109.46995 * 50.00413 * 14 12 2 32 32 H 1.09000 * 115.55188 * 154.50479 * 20 19 18 33 33 H 1.09008 * 117.50120 * 359.97438 * 21 20 19 34 34 H 1.09000 * 117.50452 * 145.01898 * 21 20 19 35 35 H 1.08993 * 117.50287 * 252.50834 * 22 21 20 36 36 H 1.09002 * 117.51861 * 107.47440 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.8073 -1.1190 4.0078 10 1 1.8276 -0.4192 5.2204 11 1 1.8279 -2.5198 4.0082 12 7 2.0198 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7530 0.0972 -2.4090 15 6 2.4776 -0.5164 -3.5794 16 7 2.0143 -1.4333 -4.3932 17 7 2.9302 -1.6951 -5.2606 18 7 3.9657 -0.9685 -5.0215 19 7 3.7237 -0.2242 -3.9959 20 6 4.6354 0.7525 -3.3951 21 6 5.9282 1.0694 -4.1494 22 6 5.9755 0.2365 -2.8669 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7086 1.1614 3.4844 27 1 0.3491 -1.9550 -1.3693 28 1 1.8134 -2.5258 -2.2045 29 1 1.7060 -2.6221 -0.4301 30 1 0.6815 0.1052 -2.6088 31 1 2.1026 1.1188 -2.2604 32 1 4.1589 1.5664 -2.8486 33 1 6.1007 0.5509 -5.0926 34 1 6.3024 2.0920 -4.0994 35 1 6.3806 0.7109 -1.9732 36 1 6.1785 -0.8299 -2.9661 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331824330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:27:49 Heat of formation + Delta-G solvation = 138.052135 kcal Electronic energy + Delta-G solvation = -18857.433602 eV Core-core repulsion = 15994.150912 eV Total energy + Delta-G solvation = -2863.282690 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.22406 -39.13764 -38.76283 -35.12841 -34.65257 -33.58348 -30.63737 -28.84461 -27.24779 -26.42379 -25.62863 -23.81122 -23.27850 -22.19817 -21.05871 -18.79875 -18.22399 -18.09374 -17.02332 -16.28282 -16.15748 -15.98484 -15.56844 -14.76102 -14.56199 -14.30929 -14.04371 -13.52572 -13.27760 -13.10294 -12.96154 -12.88367 -12.61612 -12.57281 -12.51963 -12.34091 -12.22678 -12.02898 -11.82631 -11.65302 -11.41090 -10.96788 -10.80995 -10.45502 -9.05007 -8.08638 -6.17896 0.14736 0.95658 1.10283 1.45957 1.47310 1.54009 2.44946 2.58656 2.88394 3.21649 3.25120 3.40588 3.50677 3.73106 3.78625 4.21079 4.35308 4.42782 4.50332 4.55352 4.68089 4.72011 4.79457 4.82472 4.95101 4.96346 5.11052 5.13107 5.14479 5.30018 5.50028 5.71688 5.79583 6.12666 6.38861 6.59349 6.92210 7.50660 7.52327 8.96778 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.025896 B = 0.006152 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.009158 B = 4550.413641 C = 5060.956855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.222 3.778 3 H 0.030 0.970 4 C -0.513 4.513 5 H 0.052 0.948 6 C 0.020 3.980 7 N -0.915 5.915 8 Si 0.950 3.050 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.278 1.278 12 N -0.532 5.532 13 C 0.041 3.959 14 C 0.133 3.867 15 C 0.211 3.789 16 N -0.328 5.328 17 N -0.110 5.110 18 N -0.106 5.106 19 N -0.261 5.261 20 C 0.025 3.975 21 C -0.135 4.135 22 C -0.156 4.156 23 H 0.065 0.935 24 H 0.032 0.968 25 H 0.030 0.970 26 H 0.262 0.738 27 H 0.029 0.971 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.180 0.820 33 H 0.104 0.896 34 H 0.151 0.849 35 H 0.139 0.861 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.488 3.936 -8.951 12.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.115 3.885 3 H 0.047 0.953 4 C -0.552 4.552 5 H 0.070 0.930 6 C -0.179 4.179 7 N -0.555 5.555 8 Si 0.777 3.223 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.204 1.204 12 N -0.256 5.256 13 C -0.108 4.108 14 C 0.002 3.998 15 C -0.067 4.067 16 N -0.178 5.178 17 N -0.103 5.103 18 N -0.092 5.092 19 N -0.061 5.061 20 C -0.077 4.077 21 C -0.172 4.172 22 C -0.195 4.195 23 H 0.084 0.916 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.135 0.865 32 H 0.197 0.803 33 H 0.122 0.878 34 H 0.168 0.832 35 H 0.157 0.843 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.003 3.109 -9.893 13.099 hybrid contribution -0.833 0.004 1.560 1.769 sum 7.169 3.114 -8.333 11.425 Atomic orbital electron populations 1.22281 1.00123 0.99473 1.00583 1.19116 0.90135 0.93534 0.85686 0.95259 1.21253 1.30714 1.12448 0.90781 0.92968 1.25514 0.95386 0.95721 1.01298 1.69960 1.37577 1.23876 1.24093 0.85731 0.78775 0.78580 0.79222 1.19835 1.21099 1.20362 1.62293 1.59225 1.02884 1.01233 1.22172 0.97178 0.90888 1.00538 1.20594 0.97572 0.97372 0.84310 1.26111 0.85172 0.96173 0.99238 1.74942 1.24315 1.14270 1.04311 1.78508 0.94833 1.18113 1.18892 1.78633 1.21604 1.04611 1.04380 1.48018 1.12280 1.27048 1.18776 1.22925 0.85618 0.93644 1.05466 1.23571 0.93028 1.04037 0.96583 1.23514 0.94474 1.01212 1.00270 0.91625 0.94926 0.95056 0.92912 0.95258 0.93301 0.92250 0.90816 0.86525 0.80335 0.87769 0.83160 0.84345 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.27 8.22 71.98 0.59 -6.68 16 2 C 0.22 9.95 2.31 44.17 0.10 10.05 16 3 H 0.03 1.40 7.93 -2.39 -0.02 1.38 16 4 C -0.51 -26.12 7.97 25.60 0.20 -25.92 16 5 H 0.05 2.71 7.10 -2.91 -0.02 2.69 16 6 C 0.02 1.03 5.30 84.65 0.45 1.48 16 7 N -0.92 -48.87 11.32 21.45 0.24 -48.62 16 8 Si 0.95 41.58 29.54 68.60 2.03 43.61 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 10 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 12 N -0.53 -20.52 4.69 -906.00 -4.25 -24.77 16 13 C 0.04 1.59 8.64 127.69 1.10 2.70 16 14 C 0.13 4.21 4.88 85.56 0.42 4.62 16 15 C 0.21 6.91 6.75 138.14 0.93 7.84 16 16 N -0.33 -12.11 11.55 -50.45 -0.58 -12.69 16 17 N -0.11 -4.08 13.43 37.01 0.50 -3.59 16 18 N -0.11 -3.47 12.69 37.02 0.47 -3.00 16 19 N -0.26 -7.57 3.67 -317.84 -1.17 -8.74 16 20 C 0.03 0.51 6.63 44.99 0.30 0.81 16 21 C -0.13 -1.92 10.15 30.59 0.31 -1.61 16 22 C -0.16 -2.81 10.46 30.59 0.32 -2.49 16 23 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 24 H 0.03 1.24 6.91 -2.39 -0.02 1.22 16 25 H 0.03 1.37 6.33 -2.39 -0.02 1.35 16 26 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 27 H 0.03 1.12 6.21 -2.39 -0.01 1.11 16 28 H 0.05 1.87 6.55 -2.38 -0.02 1.86 16 29 H 0.06 2.48 6.86 -2.39 -0.02 2.46 16 30 H 0.07 2.33 7.06 -2.38 -0.02 2.31 16 31 H 0.12 3.12 7.13 -2.39 -0.02 3.10 16 32 H 0.18 2.91 7.41 -2.39 -0.02 2.89 16 33 H 0.10 1.73 7.85 -2.38 -0.02 1.71 16 34 H 0.15 1.14 8.14 -2.39 -0.02 1.13 16 35 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -61.06 295.67 3.05 -58.01 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 1.09 Total: 8.99 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 4.73 Total: -9.19 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -4.79 Total: -101.42 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -61.06 3.05 -58.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331824330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.060 kcal (2) G-P(sol) polarization free energy of solvation -61.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds