Wall clock time and date at job start Thu Apr 9 2020 12:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47445 * 2 1 4 4 C 1.50707 * 109.46734 * 119.99962 * 2 1 3 5 5 O 1.21279 * 119.99807 * 119.99872 * 4 2 1 6 6 N 1.34774 * 120.00098 * 299.99776 * 4 2 1 7 7 C 1.46494 * 120.00196 * 180.02562 * 6 4 2 8 8 C 1.47200 * 112.85074 * 50.33107 * 7 6 4 9 9 N 5.02595 * 130.08414 * 110.91309 * 2 1 3 10 10 C 1.53783 * 113.61280 * 279.13435 * 7 6 4 11 11 C 1.53950 * 87.02068 * 220.04890 * 10 7 6 12 12 C 1.53777 * 87.11436 * 25.36284 * 11 10 7 13 13 N 1.46501 * 109.47093 * 239.99789 * 2 1 3 14 14 C 1.46497 * 120.00030 * 299.99905 * 13 2 1 15 15 C 1.36932 * 120.00001 * 120.00752 * 13 2 1 16 16 H 1.08004 * 119.99877 * 339.60591 * 15 13 2 17 17 C 1.38813 * 120.00484 * 159.33767 * 15 13 2 18 18 N 1.31615 * 119.99571 * 347.70672 * 17 15 13 19 19 Si 1.86794 * 120.00078 * 167.70068 * 17 15 13 20 20 H 1.48498 * 109.47349 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46880 * 120.00415 * 19 17 15 22 22 H 1.48506 * 109.47238 * 239.99615 * 19 17 15 23 23 H 1.09000 * 109.46947 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47185 * 300.00083 * 1 2 3 25 25 H 1.09000 * 109.46735 * 60.00115 * 1 2 3 26 26 H 0.97006 * 119.99646 * 0.02562 * 6 4 2 27 27 H 1.09008 * 113.61544 * 334.56944 * 10 7 6 28 28 H 1.09003 * 113.61530 * 105.46552 * 10 7 6 29 29 H 1.09003 * 113.53619 * 270.80608 * 11 10 7 30 30 H 1.09008 * 113.74127 * 139.94877 * 11 10 7 31 31 H 1.08998 * 113.61843 * 220.09252 * 12 11 10 32 32 H 1.09004 * 113.69141 * 89.19286 * 12 11 10 33 33 H 1.09000 * 109.47740 * 264.81426 * 14 13 2 34 34 H 1.09000 * 109.47076 * 24.81451 * 14 13 2 35 35 H 1.09003 * 109.46989 * 144.80935 * 14 13 2 36 36 H 0.96999 * 120.00102 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2306 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 2.1954 -0.9402 3.6508 8 6 3.6467 -1.1836 3.6175 9 7 4.7663 -1.3726 3.5920 10 6 1.3707 -2.1832 4.0249 11 6 1.5292 -1.7475 5.4929 12 6 1.7059 -0.3133 4.9670 13 7 2.0184 -0.6907 -1.1962 14 6 1.6645 -2.0932 -1.4279 15 6 2.8057 -0.0253 -2.0975 16 1 2.8037 1.0545 -2.1225 17 6 3.6107 -0.7383 -2.9752 18 7 3.8066 -2.0265 -2.7898 19 14 4.4157 0.1305 -4.4197 20 1 4.0404 1.5672 -4.4049 21 1 5.8915 0.0037 -4.3136 22 1 3.9558 -0.4889 -5.6887 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.1487 0.5386 2.5435 27 1 0.3414 -2.1480 3.6676 28 1 1.8688 -3.1242 3.7914 29 1 2.4215 -2.1499 5.9724 30 1 0.6285 -1.8854 6.0913 31 1 2.4744 0.2531 5.4931 32 1 0.7693 0.2353 4.8675 33 1 2.4610 -2.7358 -1.0528 34 1 0.7354 -2.3244 -0.9068 35 1 1.5335 -2.2631 -2.4966 36 1 4.3694 -2.5247 -3.4029 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346244289.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:28:03 Heat of formation + Delta-G solvation = 48.644914 kcal Electronic energy + Delta-G solvation = -18921.715509 eV Core-core repulsion = 16022.263079 eV Total energy + Delta-G solvation = -2899.452429 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.32022 -38.22350 -35.55261 -35.30252 -33.22401 -31.89501 -29.08490 -26.10954 -25.99721 -25.81465 -23.97653 -21.79761 -21.18681 -19.21847 -17.53672 -16.81402 -16.47718 -15.73682 -15.06888 -14.79944 -14.37009 -13.73491 -13.66457 -13.39682 -12.83838 -12.74931 -12.54433 -12.44651 -12.22820 -11.83905 -11.70741 -11.57664 -11.29280 -10.97578 -10.81236 -10.74840 -10.67401 -10.54105 -10.34805 -9.93904 -9.81557 -9.02070 -8.86379 -8.45021 -6.74269 -5.66808 -3.13786 2.74509 2.91002 3.35676 3.40019 3.46113 3.49103 3.71392 3.93201 4.32190 4.40652 4.50847 4.72639 4.98705 5.38593 5.41104 5.44941 5.48913 5.59576 5.65357 5.77614 5.88012 5.91083 5.96623 6.06252 6.17979 6.47643 6.69176 6.71132 6.93617 7.51293 7.76493 7.80874 7.91595 8.07371 8.39886 8.92398 9.25756 9.87811 10.35218 11.35805 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.032405 B = 0.006036 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.863404 B = 4637.369955 C = 4965.672664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 H 0.087 0.913 4 C 0.482 3.518 5 O -0.500 6.500 6 N -0.730 5.730 7 C 0.242 3.758 8 C 0.226 3.774 9 N -0.413 5.413 10 C -0.129 4.129 11 C -0.141 4.141 12 C -0.125 4.125 13 N -0.570 5.570 14 C 0.169 3.831 15 C -0.265 4.265 16 H 0.072 0.928 17 C 0.006 3.994 18 N -0.894 5.894 19 Si 0.906 3.094 20 H -0.277 1.277 21 H -0.291 1.291 22 H -0.288 1.288 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.402 0.598 27 H 0.102 0.898 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.042 0.958 34 H -0.006 1.006 35 H 0.041 0.959 36 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.925 4.481 14.973 19.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.043 3.957 3 H 0.105 0.895 4 C 0.267 3.733 5 O -0.370 6.370 6 N -0.388 5.388 7 C 0.151 3.849 8 C -0.094 4.094 9 N -0.088 5.088 10 C -0.169 4.169 11 C -0.179 4.179 12 C -0.164 4.164 13 N -0.289 5.289 14 C 0.025 3.975 15 C -0.394 4.394 16 H 0.089 0.911 17 C -0.194 4.194 18 N -0.537 5.537 19 Si 0.736 3.264 20 H -0.202 1.202 21 H -0.217 1.217 22 H -0.215 1.215 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.238 0.762 27 H 0.121 0.879 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.124 0.876 33 H 0.060 0.940 34 H 0.013 0.987 35 H 0.060 0.940 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.581 3.305 14.610 17.263 hybrid contribution 0.058 0.776 -0.763 1.090 sum -8.524 4.081 13.848 16.765 Atomic orbital electron populations 1.22209 0.96173 1.01926 1.01099 1.20530 0.93756 0.96646 0.84743 0.89521 1.23461 0.79861 0.85563 0.84451 1.90724 1.35245 1.25392 1.85677 1.46710 1.55033 1.32995 1.04093 1.18462 0.82277 0.96657 0.87529 1.28262 0.93962 0.93772 0.93393 1.81125 1.12627 1.07564 1.07527 1.23392 1.00861 0.97527 0.95072 1.22847 1.02948 0.95494 0.96634 1.23271 1.02422 0.97847 0.92818 1.43902 1.57347 1.10264 1.17398 1.20803 0.94404 0.84119 0.98214 1.19279 1.18859 0.90846 1.10446 0.91052 1.25097 0.97645 0.96104 1.00516 1.70154 1.39763 1.06904 1.36896 0.86167 0.78967 0.78856 0.82410 1.20232 1.21747 1.21501 0.92640 0.93325 0.91665 0.76193 0.87920 0.90290 0.89846 0.89926 0.90148 0.87624 0.93971 0.98710 0.94015 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.08 37.16 0.34 -2.00 16 2 C 0.16 3.10 3.12 -69.08 -0.22 2.89 16 3 H 0.09 1.63 7.85 -51.93 -0.41 1.22 16 4 C 0.48 9.40 6.80 -10.98 -0.07 9.33 16 5 O -0.50 -12.48 13.62 5.56 0.08 -12.40 16 6 N -0.73 -9.88 5.20 -49.46 -0.26 -10.14 16 7 C 0.24 3.08 1.18 -133.79 -0.16 2.93 16 8 C 0.23 3.95 12.64 -20.77 -0.26 3.69 16 9 N -0.41 -8.45 18.54 42.14 0.78 -7.67 16 10 C -0.13 -1.40 7.45 -25.83 -0.19 -1.59 16 11 C -0.14 -1.10 7.80 -25.83 -0.20 -1.30 16 12 C -0.12 -0.96 7.34 -25.92 -0.19 -1.15 16 13 N -0.57 -14.60 2.59 -174.81 -0.45 -15.05 16 14 C 0.17 4.43 7.60 59.85 0.46 4.88 16 15 C -0.26 -7.42 9.62 -15.06 -0.14 -7.56 16 16 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 17 C 0.01 0.18 5.12 -17.43 -0.09 0.09 16 18 N -0.89 -27.51 10.53 55.49 0.58 -26.93 16 19 Si 0.91 22.40 29.57 -169.99 -5.03 17.37 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H 0.05 0.88 6.67 -51.93 -0.35 0.54 16 24 H 0.05 0.52 7.56 -51.93 -0.39 0.13 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.40 3.81 8.06 -40.82 -0.33 3.48 16 27 H 0.10 0.97 8.14 -51.92 -0.42 0.54 16 28 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 29 H 0.08 0.70 8.13 -51.93 -0.42 0.27 16 30 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 32 H 0.11 0.53 8.13 -51.93 -0.42 0.11 16 33 H 0.04 1.26 6.72 -51.93 -0.35 0.91 16 34 H -0.01 -0.13 6.44 -51.93 -0.33 -0.46 16 35 H 0.04 1.15 7.16 -51.93 -0.37 0.78 16 36 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 302.55 15.07 4.56 4.56 Total: -1.00 -36.75 302.55 -5.50 -42.25 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -5.03 Total: -2.19 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -0.74 Total: 10.19 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.66 Total: -59.79 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -36.75 -5.50 -42.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346244289.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.896 kcal (2) G-P(sol) polarization free energy of solvation -36.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds