Wall clock time and date at job start Thu Apr 9 2020 12:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47445 * 2 1 4 4 C 1.50707 * 109.46734 * 119.99962 * 2 1 3 5 5 O 1.21279 * 119.99807 * 119.99872 * 4 2 1 6 6 N 1.34774 * 120.00098 * 299.99776 * 4 2 1 7 7 C 1.46494 * 120.00196 * 180.02562 * 6 4 2 8 8 C 1.47200 * 112.85074 * 50.33107 * 7 6 4 9 9 N 5.02595 * 130.08414 * 110.91309 * 2 1 3 10 10 C 1.53783 * 113.61280 * 279.13435 * 7 6 4 11 11 C 1.53950 * 87.02068 * 220.04890 * 10 7 6 12 12 C 1.53777 * 87.11436 * 25.36284 * 11 10 7 13 13 N 1.46501 * 109.47093 * 239.99789 * 2 1 3 14 14 C 1.46497 * 120.00030 * 299.99905 * 13 2 1 15 15 C 1.36932 * 120.00001 * 120.00752 * 13 2 1 16 16 H 1.08004 * 119.99877 * 339.60591 * 15 13 2 17 17 C 1.38813 * 120.00484 * 159.33767 * 15 13 2 18 18 N 1.31615 * 119.99571 * 347.70672 * 17 15 13 19 19 Si 1.86794 * 120.00078 * 167.70068 * 17 15 13 20 20 H 1.48498 * 109.47349 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46880 * 120.00415 * 19 17 15 22 22 H 1.48506 * 109.47238 * 239.99615 * 19 17 15 23 23 H 1.09000 * 109.46947 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47185 * 300.00083 * 1 2 3 25 25 H 1.09000 * 109.46735 * 60.00115 * 1 2 3 26 26 H 0.97006 * 119.99646 * 0.02562 * 6 4 2 27 27 H 1.09008 * 113.61544 * 334.56944 * 10 7 6 28 28 H 1.09003 * 113.61530 * 105.46552 * 10 7 6 29 29 H 1.09003 * 113.53619 * 270.80608 * 11 10 7 30 30 H 1.09008 * 113.74127 * 139.94877 * 11 10 7 31 31 H 1.08998 * 113.61843 * 220.09252 * 12 11 10 32 32 H 1.09004 * 113.69141 * 89.19286 * 12 11 10 33 33 H 1.09000 * 109.47740 * 264.81426 * 14 13 2 34 34 H 1.09000 * 109.47076 * 24.81451 * 14 13 2 35 35 H 1.09003 * 109.46989 * 144.80935 * 14 13 2 36 36 H 0.96999 * 120.00102 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2306 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 2.1954 -0.9402 3.6508 8 6 3.6467 -1.1836 3.6175 9 7 4.7663 -1.3726 3.5920 10 6 1.3707 -2.1832 4.0249 11 6 1.5292 -1.7475 5.4929 12 6 1.7059 -0.3133 4.9670 13 7 2.0184 -0.6907 -1.1962 14 6 1.6645 -2.0932 -1.4279 15 6 2.8057 -0.0253 -2.0975 16 1 2.8037 1.0545 -2.1225 17 6 3.6107 -0.7383 -2.9752 18 7 3.8066 -2.0265 -2.7898 19 14 4.4157 0.1305 -4.4197 20 1 4.0404 1.5672 -4.4049 21 1 5.8915 0.0037 -4.3136 22 1 3.9558 -0.4889 -5.6887 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.1487 0.5386 2.5435 27 1 0.3414 -2.1480 3.6676 28 1 1.8688 -3.1242 3.7914 29 1 2.4215 -2.1499 5.9724 30 1 0.6285 -1.8854 6.0913 31 1 2.4744 0.2531 5.4931 32 1 0.7693 0.2353 4.8675 33 1 2.4610 -2.7358 -1.0528 34 1 0.7354 -2.3244 -0.9068 35 1 1.5335 -2.2631 -2.4966 36 1 4.3694 -2.5247 -3.4029 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346244289.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:28:03 Heat of formation + Delta-G solvation = 20.888195 kcal Electronic energy + Delta-G solvation = -18922.919130 eV Core-core repulsion = 16022.263079 eV Total energy + Delta-G solvation = -2900.656051 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.49080 -39.59981 -37.15945 -36.95507 -34.66625 -33.69590 -30.83508 -28.05770 -27.05929 -26.72744 -25.62949 -23.50583 -22.17201 -20.65487 -19.05044 -18.54888 -17.76001 -17.02905 -16.88143 -15.93483 -15.76970 -15.44277 -15.11235 -14.91017 -14.64686 -14.10259 -13.98471 -13.79087 -13.44524 -13.25344 -13.04639 -12.79939 -12.75390 -12.53745 -12.41394 -12.35921 -12.23966 -11.86863 -11.76801 -11.66188 -11.52544 -10.80538 -10.44354 -10.13506 -8.80810 -7.82088 -5.31435 1.39917 1.43830 1.46089 1.55681 1.62297 1.85396 2.42064 2.54292 2.79238 3.33095 3.46518 3.61755 3.63831 3.88712 4.12451 4.36033 4.43711 4.53211 4.78351 4.80853 4.84256 5.01149 5.04838 5.06150 5.14517 5.15793 5.29905 5.33981 5.53940 5.56546 5.61931 5.86648 6.26889 6.44945 6.72833 7.11677 7.48981 7.86422 8.27769 9.20309 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.032405 B = 0.006036 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.863404 B = 4637.369955 C = 4965.672664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.145 3.855 3 H 0.098 0.902 4 C 0.484 3.516 5 O -0.564 6.564 6 N -0.701 5.701 7 C 0.216 3.784 8 C 0.241 3.759 9 N -0.482 5.482 10 C -0.131 4.131 11 C -0.129 4.129 12 C -0.099 4.099 13 N -0.591 5.591 14 C 0.194 3.806 15 C -0.265 4.265 16 H 0.085 0.915 17 C -0.062 4.062 18 N -0.939 5.939 19 Si 0.973 3.027 20 H -0.255 1.255 21 H -0.302 1.302 22 H -0.289 1.289 23 H 0.045 0.955 24 H 0.103 0.897 25 H 0.064 0.936 26 H 0.428 0.572 27 H 0.126 0.874 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.150 0.850 33 H -0.006 1.006 34 H 0.025 0.975 35 H 0.013 0.987 36 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.930 7.231 17.096 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.034 3.966 3 H 0.116 0.884 4 C 0.269 3.731 5 O -0.439 6.439 6 N -0.359 5.359 7 C 0.125 3.875 8 C -0.077 4.077 9 N -0.159 5.159 10 C -0.171 4.171 11 C -0.167 4.167 12 C -0.137 4.137 13 N -0.312 5.312 14 C 0.049 3.951 15 C -0.396 4.396 16 H 0.103 0.897 17 C -0.256 4.256 18 N -0.586 5.586 19 Si 0.801 3.199 20 H -0.179 1.179 21 H -0.229 1.229 22 H -0.215 1.215 23 H 0.064 0.936 24 H 0.122 0.878 25 H 0.083 0.917 26 H 0.268 0.732 27 H 0.144 0.856 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.136 0.864 31 H 0.105 0.895 32 H 0.168 0.832 33 H 0.012 0.988 34 H 0.043 0.957 35 H 0.032 0.968 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.658 6.151 16.814 21.365 hybrid contribution 0.905 -0.033 -1.273 1.562 sum -10.753 6.119 15.541 19.865 Atomic orbital electron populations 1.22086 0.91837 1.02181 1.03834 1.20895 0.96586 0.96198 0.82931 0.88380 1.23059 0.79044 0.84680 0.86272 1.90737 1.38135 1.28240 1.86824 1.46166 1.53895 1.33175 1.02694 1.19293 0.79744 0.99377 0.89063 1.29353 0.95140 0.91846 0.91406 1.81114 1.15067 1.09968 1.09722 1.23508 1.01023 0.94912 0.97618 1.22824 1.04126 0.95001 0.94731 1.23392 1.04153 0.98046 0.88153 1.44053 1.57440 1.09815 1.19877 1.20322 0.93942 0.84476 0.96335 1.19767 1.17629 0.91595 1.10568 0.89723 1.25973 0.99193 0.96801 1.03683 1.70379 1.41443 1.08702 1.38048 0.85108 0.76960 0.78849 0.78953 1.17858 1.22947 1.21536 0.93553 0.87817 0.91737 0.73161 0.85618 0.93623 0.91060 0.86351 0.89460 0.83213 0.98798 0.95695 0.96795 0.94710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.08 71.98 0.65 -3.04 16 2 C 0.15 5.46 3.12 44.25 0.14 5.60 16 3 H 0.10 3.42 7.85 -2.39 -0.02 3.40 16 4 C 0.48 18.26 6.80 87.66 0.60 18.86 16 5 O -0.56 -28.87 13.62 -3.03 -0.04 -28.92 16 6 N -0.70 -16.59 5.20 -428.77 -2.23 -18.82 16 7 C 0.22 4.94 1.18 2.33 0.00 4.95 16 8 C 0.24 8.45 12.64 89.45 1.13 9.59 16 9 N -0.48 -20.53 18.54 20.00 0.37 -20.15 16 10 C -0.13 -2.51 7.45 31.18 0.23 -2.27 16 11 C -0.13 -1.48 7.80 31.18 0.24 -1.24 16 12 C -0.10 -1.01 7.34 31.12 0.23 -0.78 16 13 N -0.59 -30.48 2.59 -706.96 -1.83 -32.31 16 14 C 0.19 10.56 7.60 127.77 0.97 11.54 16 15 C -0.27 -14.97 9.62 84.03 0.81 -14.16 16 16 H 0.09 4.43 7.80 -2.91 -0.02 4.40 16 17 C -0.06 -3.66 5.12 84.86 0.43 -3.23 16 18 N -0.94 -60.81 10.53 21.65 0.23 -60.58 16 19 Si 0.97 47.16 29.57 68.60 2.03 49.19 16 20 H -0.25 -11.24 7.11 99.48 0.71 -10.54 16 21 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 23 H 0.05 1.32 6.67 -2.39 -0.02 1.30 16 24 H 0.10 1.57 7.56 -2.39 -0.02 1.56 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.43 5.69 8.06 -92.70 -0.75 4.94 16 27 H 0.13 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.04 1.18 8.08 -2.39 -0.02 1.16 16 29 H 0.07 1.02 8.13 -2.39 -0.02 1.00 16 30 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.09 0.88 8.08 -2.39 -0.02 0.86 16 32 H 0.15 0.32 8.13 -2.38 -0.02 0.30 16 33 H -0.01 -0.41 6.72 -2.39 -0.02 -0.43 16 34 H 0.02 1.16 6.44 -2.39 -0.02 1.14 16 35 H 0.01 0.79 7.16 -2.39 -0.02 0.77 16 36 H 0.24 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -88.94 302.55 4.31 -84.63 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: 0.34 Total: 1.16 kcal Atomic # 6 Polarization: 20.37 SS G_CDS: 5.44 Total: 25.81 kcal Atomic # 7 Polarization: -128.40 SS G_CDS: -3.46 Total: -131.86 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.04 Total: -28.92 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -88.94 4.31 -84.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346244289.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.518 kcal (2) G-P(sol) polarization free energy of solvation -88.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds