Wall clock time and date at job start Thu Apr 9 2020 12:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.47408 * 2 1 4 4 C 1.46900 * 111.00207 * 288.26008 * 3 2 1 5 5 C 1.50696 * 109.46948 * 163.48114 * 4 3 2 6 6 O 1.21294 * 120.00115 * 354.47365 * 5 4 3 7 7 N 1.34774 * 120.00005 * 174.47375 * 5 4 3 8 8 C 1.37101 * 120.00265 * 179.97438 * 7 5 4 9 9 H 1.08000 * 120.00143 * 22.69848 * 8 7 5 10 10 C 1.38951 * 120.00026 * 202.70433 * 8 7 5 11 11 N 1.31411 * 120.00076 * 10.87797 * 10 8 7 12 12 Si 1.86803 * 119.99950 * 190.88308 * 10 8 7 13 13 H 1.48496 * 109.47253 * 59.99556 * 12 10 8 14 14 H 1.48503 * 109.47265 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46958 * 299.99313 * 12 10 8 16 16 C 1.46503 * 120.00012 * 0.02562 * 7 5 4 17 17 C 1.47202 * 109.47173 * 84.82287 * 16 7 5 18 18 N 5.74373 * 65.21566 * 309.87302 * 2 1 3 19 19 C 1.46898 * 110.99878 * 164.29865 * 3 2 1 20 20 C 1.53001 * 117.49779 * 7.58332 * 19 3 2 21 21 C 1.52998 * 117.50237 * 298.95781 * 19 3 2 22 22 H 1.09005 * 109.46976 * 59.14609 * 1 2 3 23 23 H 1.08999 * 109.47206 * 179.14967 * 1 2 3 24 24 H 1.09000 * 109.46957 * 299.15313 * 1 2 3 25 25 H 1.08993 * 109.47280 * 120.00580 * 2 1 3 26 26 H 1.09003 * 109.46524 * 240.00009 * 2 1 3 27 27 H 1.09000 * 109.47003 * 283.47959 * 4 3 2 28 28 H 1.09000 * 109.47214 * 43.47872 * 4 3 2 29 29 H 0.97001 * 119.99676 * 180.02562 * 11 10 8 30 30 H 1.09004 * 109.46991 * 204.82389 * 16 7 5 31 31 H 1.08995 * 109.47124 * 324.82212 * 16 7 5 32 32 H 1.09004 * 115.54597 * 153.28340 * 19 3 2 33 33 H 1.08992 * 117.50036 * 359.97438 * 20 19 3 34 34 H 1.09005 * 117.49575 * 145.01796 * 20 19 3 35 35 H 1.08999 * 117.50024 * 214.97815 * 21 19 3 36 36 H 1.08997 * 117.49587 * 359.97438 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.7902 2.0246 -1.3024 5 6 1.9181 3.5191 -1.1575 6 8 2.0755 4.0107 -0.0599 7 7 1.8577 4.3094 -2.2475 8 6 1.9736 5.6691 -2.1156 9 1 2.4638 6.0879 -1.2492 10 6 1.4602 6.5085 -3.0968 11 7 0.6819 6.0214 -4.0369 12 14 1.8766 8.3295 -3.0795 13 1 3.3471 8.5022 -3.1930 14 1 1.2100 9.0006 -4.2243 15 1 1.4040 8.9333 -1.8077 16 6 1.6670 3.7157 -3.5731 17 6 0.2302 3.5059 -3.8148 18 7 -0.8778 3.3431 -4.0021 19 6 3.4400 1.4411 0.3711 20 6 4.1875 0.1131 0.5077 21 6 3.8293 0.9213 1.7565 22 1 -0.3633 0.5271 -0.8823 23 1 -0.3633 -1.0275 -0.0153 24 1 -0.3633 0.5006 0.8975 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 2.5282 1.6645 -2.0191 28 1 0.7893 1.7782 -1.6567 29 1 0.3239 6.6074 -4.7220 30 1 2.0692 4.3860 -4.3328 31 1 2.1870 2.7589 -3.6209 32 1 3.9950 2.2934 -0.0209 33 1 3.6254 -0.8022 0.3225 34 1 5.2346 0.0916 0.2053 35 1 4.6406 1.4314 2.2757 36 1 3.0315 0.5381 2.3927 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346770225.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:28:09 Heat of formation + Delta-G solvation = 47.144243 kcal Electronic energy + Delta-G solvation = -18885.160831 eV Core-core repulsion = 15985.643328 eV Total energy + Delta-G solvation = -2899.517503 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.39003 -38.01652 -35.67476 -34.33498 -34.00481 -31.81750 -30.32177 -27.51085 -26.58967 -24.22167 -22.90840 -22.00302 -20.13936 -18.80544 -17.83664 -16.71891 -16.26496 -16.12157 -15.45593 -14.75105 -14.31390 -13.93362 -13.53905 -13.23751 -12.95556 -12.85219 -12.68173 -12.05098 -11.99379 -11.74176 -11.52827 -11.42450 -11.21775 -11.12823 -11.08902 -10.77434 -10.56283 -10.47726 -10.41057 -10.24575 -10.09929 -9.20554 -8.54782 -7.96802 -7.77111 -6.43246 -4.01795 3.15571 3.23090 3.24981 3.58773 3.76305 3.93533 4.04171 4.14485 4.20302 4.81748 4.95774 5.03460 5.11355 5.17229 5.20693 5.25762 5.42816 5.59060 5.60326 5.71747 5.74717 5.85429 5.92026 5.99844 6.12317 6.15537 6.20222 6.27727 6.38852 6.59851 7.25763 7.34144 7.48771 7.98944 8.34316 8.80707 9.05742 9.23280 9.80544 10.62064 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.025652 B = 0.006822 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.287823 B = 4103.226169 C = 4829.413371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 N -0.486 5.486 4 C 0.040 3.960 5 C 0.462 3.538 6 O -0.548 6.548 7 N -0.451 5.451 8 C -0.305 4.305 9 H 0.105 0.895 10 C 0.030 3.970 11 N -0.890 5.890 12 Si 0.932 3.068 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.224 3.776 17 C 0.250 3.750 18 N -0.479 5.479 19 C 0.044 3.956 20 C -0.230 4.230 21 C -0.170 4.170 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.273 0.727 30 H 0.129 0.871 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.342 -10.629 2.251 12.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.080 4.080 3 N -0.208 5.208 4 C -0.091 4.091 5 C 0.250 3.750 6 O -0.427 6.427 7 N -0.174 5.174 8 C -0.432 4.432 9 H 0.122 0.878 10 C -0.173 4.173 11 N -0.530 5.530 12 Si 0.759 3.241 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.199 1.199 16 C 0.096 3.904 17 C -0.068 4.068 18 N -0.159 5.159 19 C -0.066 4.066 20 C -0.269 4.269 21 C -0.208 4.208 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.147 0.853 31 H 0.095 0.905 32 H 0.138 0.862 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.404 -10.242 2.725 11.477 hybrid contribution 0.819 0.646 -0.755 1.288 sum 5.222 -9.596 1.970 11.101 Atomic orbital electron populations 1.21825 0.94897 1.01047 1.03039 1.22201 0.96082 0.89091 1.00611 1.61385 1.15107 1.15588 1.28737 1.22069 1.02184 0.94748 0.90106 1.20046 0.82682 0.87554 0.84766 1.90564 1.51686 1.75447 1.25039 1.43608 1.64186 1.06643 1.02960 1.19648 1.35594 0.79474 1.08511 0.87760 1.25319 0.94907 1.00614 0.96415 1.69670 1.30893 1.36641 1.15841 0.85885 0.78612 0.81687 0.77889 1.19801 1.21023 1.19878 1.18717 0.83783 0.98285 0.89625 1.29265 0.95587 0.89469 0.92456 1.80860 1.12620 1.13503 1.08956 1.22551 0.88025 0.95995 0.99984 1.23635 1.01519 0.97136 1.04605 1.22964 1.02945 1.03582 0.91304 0.92517 0.92515 0.91744 0.90555 0.94694 0.92737 0.88895 0.91611 0.85309 0.90515 0.86177 0.88637 0.89140 0.88757 0.88862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.99 37.16 0.37 -1.59 16 2 C 0.05 0.63 4.32 -3.82 -0.02 0.61 16 3 N -0.49 -8.09 4.26 -228.09 -0.97 -9.06 16 4 C 0.04 0.70 3.99 -4.98 -0.02 0.68 16 5 C 0.46 10.44 7.05 -10.99 -0.08 10.36 16 6 O -0.55 -14.34 15.38 5.55 0.09 -14.26 16 7 N -0.45 -10.46 2.59 -117.93 -0.31 -10.76 16 8 C -0.30 -7.83 9.29 -14.93 -0.14 -7.97 16 9 H 0.10 2.81 7.41 -52.49 -0.39 2.42 16 10 C 0.03 0.74 5.09 -17.47 -0.09 0.65 16 11 N -0.89 -22.50 9.03 55.50 0.50 -21.99 16 12 Si 0.93 19.96 29.57 -169.99 -5.03 14.93 16 13 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 14 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 16 C 0.22 4.40 4.91 -6.83 -0.03 4.37 16 17 C 0.25 5.53 13.00 -20.78 -0.27 5.26 16 18 N -0.48 -11.40 18.53 42.13 0.78 -10.62 16 19 C 0.04 0.68 5.36 -67.71 -0.36 0.32 16 20 C -0.23 -2.73 9.54 -26.73 -0.25 -2.99 16 21 C -0.17 -2.24 9.95 -26.73 -0.27 -2.51 16 22 H 0.06 0.81 6.51 -51.93 -0.34 0.47 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.08 0.92 5.82 -51.93 -0.30 0.61 16 26 H 0.03 0.42 7.85 -51.93 -0.41 0.01 16 27 H 0.05 0.82 7.02 -51.93 -0.36 0.46 16 28 H 0.09 1.64 5.94 -51.93 -0.31 1.33 16 29 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.13 2.61 6.54 -51.93 -0.34 2.27 16 31 H 0.08 1.16 6.50 -51.93 -0.34 0.82 16 32 H 0.12 2.07 7.38 -51.93 -0.38 1.68 16 33 H 0.10 1.04 5.95 -51.93 -0.31 0.73 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.09 1.21 7.63 -51.93 -0.40 0.82 16 LS Contribution 298.60 15.07 4.50 4.50 Total: -1.00 -30.34 298.60 -6.29 -36.63 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.70 Total: 3.44 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -1.16 Total: 7.19 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.01 Total: -52.44 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.09 Total: -14.26 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.34 -6.29 -36.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346770225.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.778 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds