Wall clock time and date at job start Thu Apr 9 2020 12:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46503 * 109.46936 * 2 1 4 4 C 1.36940 * 120.00039 * 272.20764 * 3 2 1 5 5 H 1.07994 * 119.99857 * 8.55459 * 4 3 2 6 6 C 1.38814 * 119.99712 * 188.55196 * 4 3 2 7 7 N 1.31616 * 119.99932 * 24.78271 * 6 4 3 8 8 Si 1.86793 * 119.99797 * 204.78509 * 6 4 3 9 9 H 1.48502 * 109.47272 * 90.00184 * 8 6 4 10 10 H 1.48500 * 109.46978 * 210.00135 * 8 6 4 11 11 H 1.48503 * 109.47065 * 329.99968 * 8 6 4 12 12 C 1.46506 * 119.99865 * 92.21110 * 3 2 1 13 13 C 1.50697 * 109.47396 * 89.99674 * 12 3 2 14 14 O 1.21288 * 119.99574 * 359.97438 * 13 12 3 15 15 N 1.34768 * 120.00010 * 179.97438 * 13 12 3 16 16 C 1.46507 * 119.99782 * 180.02562 * 15 13 12 17 17 C 1.47193 * 112.85131 * 48.80367 * 16 15 13 18 18 N 6.42460 * 153.83418 * 24.93565 * 2 1 3 19 19 C 1.53783 * 113.61294 * 180.02562 * 16 15 13 20 20 C 1.53774 * 87.08308 * 89.19635 * 19 16 15 21 21 C 1.53779 * 87.17519 * 25.39138 * 20 19 16 22 22 H 1.09000 * 109.46727 * 300.00049 * 1 2 3 23 23 H 1.09006 * 109.46848 * 59.99614 * 1 2 3 24 24 H 1.08994 * 109.46815 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47041 * 240.00327 * 2 1 3 26 26 H 1.08991 * 109.46997 * 119.99923 * 2 1 3 27 27 H 0.97001 * 119.99789 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.46789 * 329.99290 * 12 3 2 29 29 H 1.08999 * 109.47154 * 210.00064 * 12 3 2 30 30 H 0.96998 * 120.00182 * 0.02562 * 15 13 12 31 31 H 1.09003 * 113.61493 * 334.64604 * 19 16 15 32 32 H 1.08997 * 113.68650 * 203.75970 * 19 16 15 33 33 H 1.09003 * 113.61002 * 139.98205 * 20 19 16 34 34 H 1.09000 * 113.61412 * 270.79642 * 20 19 16 35 35 H 1.08998 * 113.61476 * 89.15674 * 21 20 19 36 36 H 1.09004 * 113.61471 * 220.06150 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2035 2.0420 -1.1850 5 1 1.8617 1.5997 -2.1090 6 6 2.8305 3.2804 -1.1985 7 7 3.6594 3.6090 -0.2304 8 14 2.4978 4.4806 -2.5907 9 1 1.3448 5.3457 -2.2336 10 1 3.6991 5.3243 -2.8146 11 1 2.1850 3.7258 -3.8308 12 6 2.3087 2.0556 1.2679 13 6 3.7467 1.8135 1.6478 14 8 4.4589 1.1433 0.9304 15 7 4.2413 2.3418 2.7847 16 6 5.6396 2.1069 3.1538 17 6 6.5745 2.3681 2.0473 18 7 7.2963 2.5690 1.1944 19 6 6.0481 2.7758 4.4769 20 6 5.5926 1.4857 5.1789 21 6 5.8738 0.7562 3.8546 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 4.0978 4.4742 -0.2400 28 1 1.6558 1.6616 2.0467 29 1 2.1373 3.1263 1.1575 30 1 3.6717 2.8775 3.3586 31 1 5.4444 3.6473 4.7303 32 1 7.1185 2.9637 4.5604 33 1 6.2471 1.1779 5.9944 34 1 4.5394 1.4900 5.4599 35 1 6.8967 0.3902 3.7664 36 1 5.1296 -0.0005 3.6063 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346864840.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:28:11 Heat of formation + Delta-G solvation = 48.127338 kcal Electronic energy + Delta-G solvation = -19161.955628 eV Core-core repulsion = 16262.480755 eV Total energy + Delta-G solvation = -2899.474873 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.88847 -37.49881 -35.29436 -35.14616 -32.26276 -31.84372 -29.22819 -27.08187 -25.75290 -25.44399 -23.56323 -20.90681 -20.01320 -19.68141 -17.37505 -16.88247 -15.86573 -15.45800 -15.04741 -14.39831 -13.87185 -13.59204 -13.45663 -13.01563 -12.91644 -12.72190 -12.41771 -12.34135 -11.84236 -11.75489 -11.36622 -11.26648 -11.06419 -10.92330 -10.76180 -10.72532 -10.38892 -10.32731 -10.14934 -9.86671 -9.77877 -8.78947 -8.31502 -8.25442 -6.90682 -5.80088 -3.04392 3.27667 3.38528 3.41884 3.49304 3.51594 4.08516 4.15522 4.46298 4.54756 4.70430 4.74702 5.07147 5.23787 5.36576 5.48604 5.66237 5.69010 5.84694 5.98077 6.06560 6.11729 6.18966 6.27340 6.32052 6.32931 6.57591 6.66925 6.84467 7.07320 7.17908 7.29219 7.81004 8.24985 8.33007 8.54011 9.17655 9.65400 9.87647 10.28398 11.30030 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.008300 C = 0.006629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.434782 B = 3372.696957 C = 4223.168456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 N -0.574 5.574 4 C -0.244 4.244 5 H 0.077 0.923 6 C -0.002 4.002 7 N -0.896 5.896 8 Si 0.901 3.099 9 H -0.289 1.289 10 H -0.295 1.295 11 H -0.282 1.282 12 C 0.167 3.833 13 C 0.527 3.473 14 O -0.516 6.516 15 N -0.725 5.725 16 C 0.253 3.747 17 C 0.225 3.775 18 N -0.425 5.425 19 C -0.129 4.129 20 C -0.133 4.133 21 C -0.133 4.133 22 H 0.044 0.956 23 H 0.052 0.948 24 H 0.038 0.962 25 H 0.044 0.956 26 H 0.035 0.965 27 H 0.252 0.748 28 H 0.038 0.962 29 H 0.104 0.896 30 H 0.396 0.604 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.546 -2.793 14.013 14.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 N -0.293 5.293 4 C -0.373 4.373 5 H 0.095 0.905 6 C -0.199 4.199 7 N -0.542 5.542 8 Si 0.732 3.268 9 H -0.216 1.216 10 H -0.222 1.222 11 H -0.207 1.207 12 C 0.036 3.964 13 C 0.314 3.686 14 O -0.387 6.387 15 N -0.383 5.383 16 C 0.161 3.839 17 C -0.095 4.095 18 N -0.101 5.101 19 C -0.168 4.168 20 C -0.171 4.171 21 C -0.173 4.173 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.122 0.878 30 H 0.230 0.770 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.105 -2.877 12.084 12.422 hybrid contribution -0.444 1.038 -0.368 1.187 sum -0.339 -1.839 11.716 11.864 Atomic orbital electron populations 1.22313 0.99488 0.99116 1.01484 1.20720 0.91853 0.86290 0.99218 1.43952 1.73763 1.09533 1.02063 1.19229 1.32527 0.99119 0.86433 0.90518 1.24665 0.97448 0.99539 0.98238 1.69862 1.27737 1.21592 1.34963 0.86265 0.77165 0.81502 0.81851 1.21632 1.22196 1.20708 1.20699 0.88598 1.00286 0.86822 1.22447 0.92531 0.76394 0.77240 1.90552 1.60087 1.39328 1.48770 1.46220 1.07544 1.57598 1.26895 1.18250 0.81886 0.97603 0.86135 1.28673 0.93756 0.93215 0.93852 1.80988 1.12893 1.08320 1.07937 1.23250 1.02602 0.98433 0.92555 1.22810 1.02063 0.95547 0.96669 1.23357 1.02864 0.96283 0.94819 0.93729 0.92881 0.94309 0.93733 0.94616 0.93768 0.94361 0.87816 0.76960 0.89781 0.88748 0.90778 0.89372 0.89444 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 10.23 37.16 0.38 -2.47 16 2 C 0.15 3.04 6.39 -4.04 -0.03 3.02 16 3 N -0.57 -14.06 2.02 -174.60 -0.35 -14.42 16 4 C -0.24 -6.71 9.70 -15.06 -0.15 -6.86 16 5 H 0.08 2.11 7.94 -52.49 -0.42 1.69 16 6 C 0.00 -0.04 4.90 -17.43 -0.09 -0.13 16 7 N -0.90 -25.41 8.96 55.49 0.50 -24.91 16 8 Si 0.90 22.36 29.62 -169.99 -5.03 17.32 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.30 -7.62 7.11 56.52 0.40 -7.21 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.17 3.68 5.42 -5.19 -0.03 3.66 16 13 C 0.53 11.76 5.65 -10.99 -0.06 11.70 16 14 O -0.52 -14.02 14.85 5.55 0.08 -13.94 16 15 N -0.72 -12.35 5.21 -49.37 -0.26 -12.61 16 16 C 0.25 4.00 1.09 -133.70 -0.15 3.85 16 17 C 0.22 4.71 12.87 -20.79 -0.27 4.44 16 18 N -0.43 -10.20 18.53 42.12 0.78 -9.42 16 19 C -0.13 -1.37 7.31 -25.92 -0.19 -1.56 16 20 C -0.13 -1.21 7.99 -25.92 -0.21 -1.42 16 21 C -0.13 -1.72 7.42 -25.83 -0.19 -1.91 16 22 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.04 0.97 8.06 -51.93 -0.42 0.55 16 26 H 0.04 0.71 8.05 -51.93 -0.42 0.29 16 27 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 29 H 0.10 2.46 6.30 -51.93 -0.33 2.14 16 30 H 0.40 5.32 8.63 -40.82 -0.35 4.97 16 31 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 32 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 307.99 15.07 4.64 4.64 Total: -1.00 -35.01 307.99 -5.90 -40.90 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -5.28 Total: 0.11 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: -0.97 Total: 12.31 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 0.67 Total: -61.36 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.08 Total: -13.94 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.32 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.01 -5.90 -40.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346864840.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.032 kcal (2) G-P(sol) polarization free energy of solvation -35.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds