Wall clock time and date at job start Thu Apr 9 2020 12:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 110.99912 * 2 1 4 4 C 1.50694 * 109.47270 * 66.04411 * 3 2 1 5 5 H 1.08004 * 119.99900 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00226 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00108 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00040 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47441 * 89.99625 * 8 6 4 10 10 H 1.48499 * 109.47515 * 210.00218 * 8 6 4 11 11 H 1.48510 * 109.46856 * 330.00087 * 8 6 4 12 12 C 1.46895 * 111.00395 * 236.04392 * 2 1 3 13 13 C 1.50699 * 109.47121 * 293.95568 * 12 2 1 14 14 O 1.21276 * 120.00052 * 359.97438 * 13 12 2 15 15 N 1.34778 * 119.99980 * 180.02562 * 13 12 2 16 16 C 1.46504 * 120.00013 * 180.02562 * 15 13 12 17 17 C 1.47195 * 112.85089 * 48.79653 * 16 15 13 18 18 N 5.54202 * 65.28004 * 193.46243 * 2 1 3 19 19 C 1.53782 * 113.61531 * 179.97438 * 16 15 13 20 20 C 1.53781 * 87.08260 * 89.19598 * 19 16 15 21 21 C 1.53786 * 87.17350 * 25.39213 * 20 19 16 22 22 H 1.08994 * 109.46902 * 183.95036 * 1 2 3 23 23 H 1.08997 * 109.47152 * 303.95796 * 1 2 3 24 24 H 1.08998 * 109.46598 * 63.95747 * 1 2 3 25 25 H 1.09002 * 109.47314 * 186.04705 * 3 2 1 26 26 H 1.09001 * 109.46830 * 306.03871 * 3 2 1 27 27 H 0.97008 * 120.00115 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.47668 * 173.95335 * 12 2 1 29 29 H 1.09002 * 109.47190 * 53.95601 * 12 2 1 30 30 H 0.97000 * 120.00452 * 359.97438 * 15 13 12 31 31 H 1.09001 * 113.61250 * 334.64416 * 19 16 15 32 32 H 1.08996 * 113.68722 * 203.75730 * 19 16 15 33 33 H 1.09002 * 113.61445 * 139.98212 * 20 19 16 34 34 H 1.09002 * 113.61408 * 270.79943 * 20 19 16 35 35 H 1.08993 * 113.61491 * 89.15923 * 21 20 19 36 36 H 1.09000 * 113.61138 * 220.06261 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0738 1.5115 2.0484 6 6 2.0267 3.3495 1.5284 7 7 1.7133 3.9394 2.6613 8 14 2.9987 4.2767 0.2303 9 1 2.0612 4.9803 -0.6815 10 1 3.8854 5.2684 0.8902 11 1 3.8222 3.3183 -0.5499 12 6 1.9955 -0.7660 -1.1375 13 6 1.6370 -2.2204 -0.9727 14 8 1.0055 -2.5832 -0.0030 15 7 2.0190 -3.1181 -1.9026 16 6 1.6700 -4.5320 -1.7427 17 6 0.2483 -4.7370 -1.4216 18 7 -0.8486 -4.8958 -1.1720 19 6 2.1778 -5.4251 -2.8871 20 6 3.4705 -5.5991 -2.0725 21 6 2.6301 -5.3035 -0.8189 22 1 -0.3633 -1.0252 0.0708 23 1 -0.3633 0.5740 0.8524 24 1 -0.3632 0.4512 -0.9233 25 1 3.0797 1.3445 -0.1083 26 1 1.5611 1.9273 -0.8310 27 1 1.9879 4.8556 2.8233 28 1 3.0798 -0.6611 -1.1755 29 1 1.5612 -0.3873 -2.0628 30 1 2.5244 -2.8281 -2.6780 31 1 2.3220 -4.8912 -3.8264 32 1 1.6100 -6.3476 -3.0074 33 1 3.8712 -6.6124 -2.1006 34 1 4.2241 -4.8400 -2.2820 35 1 2.1856 -6.1925 -0.3717 36 1 3.1392 -4.6717 -0.0911 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347063099.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:28:13 Heat of formation + Delta-G solvation = 33.772387 kcal Electronic energy + Delta-G solvation = -18249.715931 eV Core-core repulsion = 15349.618581 eV Total energy + Delta-G solvation = -2900.097350 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.76094 -38.60334 -36.04319 -35.92989 -33.40794 -32.44352 -28.90123 -27.48518 -26.28284 -26.23394 -23.97265 -21.15762 -20.63442 -20.05465 -18.21181 -17.21702 -16.63370 -16.16204 -15.37145 -15.02446 -14.50992 -14.19850 -14.04238 -13.80238 -13.68040 -13.50223 -12.92181 -12.72958 -12.53421 -12.14282 -12.02567 -11.76252 -11.39576 -11.32190 -11.17974 -10.99313 -10.87878 -10.72354 -10.50968 -9.88988 -9.53019 -9.37305 -9.21529 -8.58302 -7.42552 -6.04416 -4.02182 2.35602 2.61367 2.73215 3.20343 3.26737 3.33737 3.34868 3.71799 4.03844 4.20042 4.40630 4.40853 4.65816 4.84053 5.06340 5.20149 5.24074 5.27038 5.44967 5.51540 5.55140 5.59760 5.69782 5.77366 6.17780 6.25429 6.31829 6.74812 6.82860 7.00379 7.28186 7.51999 7.56320 7.85393 7.96410 8.31633 8.64947 9.06238 9.55964 11.08799 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.038179 B = 0.004608 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.206160 B = 6074.711514 C = 6430.131550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.513 5.513 3 C 0.163 3.837 4 C -0.509 4.509 5 H 0.082 0.918 6 C 0.068 3.932 7 N -0.899 5.899 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.037 3.963 13 C 0.514 3.486 14 O -0.498 6.498 15 N -0.717 5.717 16 C 0.245 3.755 17 C 0.215 3.785 18 N -0.413 5.413 19 C -0.125 4.125 20 C -0.136 4.136 21 C -0.131 4.131 22 H 0.065 0.935 23 H 0.081 0.919 24 H 0.006 0.994 25 H 0.030 0.970 26 H -0.015 1.015 27 H 0.264 0.736 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.409 0.591 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.212 -17.700 -15.289 24.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.237 5.237 3 C 0.037 3.963 4 C -0.547 4.547 5 H 0.100 0.900 6 C -0.133 4.133 7 N -0.538 5.538 8 Si 0.704 3.296 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.192 1.192 12 C -0.095 4.095 13 C 0.300 3.700 14 O -0.369 6.369 15 N -0.374 5.374 16 C 0.154 3.846 17 C -0.105 4.105 18 N -0.089 5.089 19 C -0.164 4.164 20 C -0.173 4.173 21 C -0.171 4.171 22 H 0.084 0.916 23 H 0.100 0.900 24 H 0.024 0.976 25 H 0.048 0.952 26 H 0.003 0.997 27 H 0.074 0.926 28 H 0.120 0.880 29 H 0.072 0.928 30 H 0.245 0.755 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.247 -18.197 -13.625 23.126 hybrid contribution 0.848 1.374 -1.795 2.415 sum 5.095 -16.823 -15.420 23.383 Atomic orbital electron populations 1.22406 0.87319 1.01576 1.00373 1.61698 1.08322 1.16005 1.37698 1.20246 0.95159 0.83490 0.97389 1.21017 1.35629 0.97211 1.00884 0.89967 1.24900 0.95800 0.97287 0.95358 1.69896 1.46773 1.13217 1.23917 0.86851 0.80569 0.80062 0.82137 1.20371 1.21115 1.19222 1.21972 1.02207 0.89989 0.95338 1.21139 0.78610 0.88293 0.81927 1.90722 1.37133 1.80004 1.29014 1.45827 1.59615 1.04816 1.27163 1.18447 0.82457 0.83816 0.99875 1.28767 0.94296 0.94006 0.93451 1.81149 1.12257 1.07512 1.07999 1.23280 0.97293 0.99333 0.96514 1.22866 0.96129 1.03173 0.95131 1.23394 0.96027 1.00248 0.97455 0.91606 0.90037 0.97571 0.95248 0.99709 0.92631 0.88048 0.92777 0.75454 0.89392 0.87976 0.90087 0.89077 0.88635 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.03 60.06 0.54 1.21 16 2 N -0.51 -11.06 4.49 -245.84 -1.10 -12.16 16 3 C 0.16 3.91 3.79 -4.98 -0.02 3.89 16 4 C -0.51 -14.65 9.01 -34.44 -0.31 -14.96 16 5 H 0.08 2.62 7.37 -52.48 -0.39 2.24 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 8 Si 0.88 21.15 27.47 -169.99 -4.67 16.49 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 12 C 0.04 0.58 5.45 -4.98 -0.03 0.55 16 13 C 0.51 7.66 7.31 -10.99 -0.08 7.58 16 14 O -0.50 -9.69 13.00 5.56 0.07 -9.62 16 15 N -0.72 -6.97 5.21 -49.37 -0.26 -7.23 16 16 C 0.25 2.30 1.09 -133.70 -0.15 2.15 16 17 C 0.21 2.94 12.87 -20.76 -0.27 2.67 16 18 N -0.41 -6.89 18.54 42.16 0.78 -6.11 16 19 C -0.13 -0.63 7.30 -25.92 -0.19 -0.82 16 20 C -0.14 -0.63 7.99 -25.92 -0.21 -0.84 16 21 C -0.13 -1.06 7.42 -25.82 -0.19 -1.25 16 22 H 0.07 1.40 5.88 -51.93 -0.31 1.09 16 23 H 0.08 1.92 6.76 -51.93 -0.35 1.57 16 24 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16 25 H 0.03 0.69 6.99 -51.93 -0.36 0.33 16 26 H -0.01 -0.35 7.55 -51.93 -0.39 -0.74 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.10 1.37 7.93 -51.93 -0.41 0.95 16 29 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 30 H 0.41 2.40 8.63 -40.82 -0.35 2.04 16 31 H 0.09 0.29 8.12 -51.93 -0.42 -0.13 16 32 H 0.10 0.46 8.09 -51.93 -0.42 0.04 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 0.73 8.09 -51.93 -0.42 0.31 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 304.56 15.07 4.59 4.59 Total: -1.00 -36.15 304.56 -5.91 -42.06 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -5.10 Total: -3.13 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -0.99 Total: 2.07 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.19 Total: -52.46 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.07 Total: -9.62 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -36.15 -5.91 -42.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347063099.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.831 kcal (2) G-P(sol) polarization free energy of solvation -36.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds