Wall clock time and date at job start Thu Apr 9 2020 12:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47443 * 2 1 4 4 C 1.46499 * 119.99815 * 270.00239 * 3 2 1 5 5 C 1.50698 * 109.47059 * 269.99844 * 4 3 2 6 6 H 1.08001 * 119.99878 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00070 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00378 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00125 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47077 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47687 * 119.99691 * 9 7 5 12 12 H 1.48501 * 109.47416 * 239.99837 * 9 7 5 13 13 C 1.34777 * 120.00060 * 89.99593 * 3 2 1 14 14 O 1.21282 * 119.99930 * 179.97438 * 13 3 2 15 15 C 1.50696 * 119.99855 * 0.02562 * 13 3 2 16 16 C 1.52999 * 109.47018 * 179.97438 * 15 13 3 17 17 C 1.50704 * 109.47417 * 180.02562 * 16 15 13 18 18 C 1.34664 * 126.58651 * 275.03863 * 17 16 15 19 19 N 1.34134 * 108.01786 * 179.74146 * 18 17 16 20 20 C 1.30496 * 109.25675 * 0.37372 * 19 18 17 21 21 N 1.35047 * 108.70161 * 359.62603 * 20 19 18 22 22 H 0.96997 * 126.40535 * 180.25138 * 21 20 19 23 23 H 1.08996 * 109.47016 * 60.00030 * 1 2 3 24 24 H 1.08996 * 109.47648 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46876 * 300.00570 * 1 2 3 26 26 H 1.08998 * 109.47122 * 239.99698 * 2 1 3 27 27 H 1.09006 * 109.47058 * 120.00020 * 2 1 3 28 28 H 1.09005 * 109.47468 * 29.99526 * 4 3 2 29 29 H 1.09000 * 109.47005 * 150.00023 * 4 3 2 30 30 H 0.96993 * 120.00269 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47441 * 59.99731 * 15 13 3 32 32 H 1.08998 * 109.47505 * 299.99456 * 15 13 3 33 33 H 1.08992 * 109.47476 * 59.99861 * 16 15 13 34 34 H 1.09004 * 109.47205 * 299.99755 * 16 15 13 35 35 H 1.07998 * 125.99171 * 359.92955 * 18 17 16 36 36 H 1.08002 * 125.65353 * 179.89694 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3428 1.2308 -1.0958 7 6 4.1494 2.3903 -2.8775 8 7 3.3494 3.1264 -3.6177 9 14 5.9133 2.0961 -3.4171 10 1 6.6007 1.2401 -2.4171 11 1 5.9204 1.4179 -4.7382 12 1 6.6216 3.3969 -3.5248 13 6 2.2430 2.0166 1.1672 14 8 2.6478 3.1599 1.1672 15 6 1.9922 1.3060 2.4722 16 6 2.3241 2.2433 3.6352 17 6 2.0740 1.5325 4.9403 18 6 0.8977 1.4352 5.5887 19 7 1.0975 0.7196 6.7055 20 6 2.3545 0.3767 6.7778 21 7 2.9986 0.8612 5.6941 22 1 3.9403 0.7534 5.4882 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.5817 1.6877 -2.0285 29 1 2.0956 3.1410 -1.1384 30 1 3.6755 3.5169 -4.4435 31 1 2.6227 0.4187 2.5299 32 1 0.9444 1.0116 2.5302 33 1 1.6940 3.1308 3.5778 34 1 3.3721 2.5373 3.5771 35 1 -0.0424 1.8566 5.2646 36 1 2.8044 -0.2028 7.5704 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354470704.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:28:20 Heat of formation + Delta-G solvation = -14.376591 kcal Electronic energy + Delta-G solvation = -18129.656539 eV Core-core repulsion = 15227.471293 eV Total energy + Delta-G solvation = -2902.185247 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.91331 -40.71081 -37.00165 -35.15170 -34.64110 -33.19027 -31.60644 -30.17174 -28.72969 -25.93200 -24.53519 -23.66934 -22.38739 -21.60687 -19.81160 -18.85527 -18.58828 -17.65105 -17.21182 -16.58122 -16.22778 -15.72942 -15.33995 -14.85559 -14.69261 -14.53257 -14.30232 -13.99824 -13.71661 -13.42790 -13.26475 -13.20753 -12.94917 -12.67019 -12.44809 -12.28255 -12.10747 -11.80020 -11.68114 -10.94357 -10.89731 -10.65313 -10.59346 -9.42452 -9.28341 -8.22520 -6.37596 1.13231 1.35987 1.38161 1.49802 1.86031 2.21461 2.27487 2.35826 2.51550 3.06985 3.60588 3.93822 4.01530 4.08866 4.13974 4.29958 4.42710 4.52517 4.60187 4.65120 4.71944 4.83481 4.97906 5.00687 5.06189 5.12290 5.23771 5.38500 5.40688 5.58550 5.81359 5.86958 6.06740 6.60671 6.70431 6.82580 7.16612 7.28561 7.50519 8.84752 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.029849 B = 0.004692 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.841779 B = 5966.007607 C = 6397.022558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.101 3.899 3 N -0.604 5.604 4 C 0.260 3.740 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.270 1.270 12 H -0.282 1.282 13 C 0.495 3.505 14 O -0.598 6.598 15 C -0.115 4.115 16 C -0.021 4.021 17 C -0.017 4.017 18 C -0.042 4.042 19 N -0.537 5.537 20 C 0.191 3.809 21 N -0.559 5.559 22 H 0.433 0.567 23 H 0.037 0.963 24 H 0.093 0.907 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.020 0.980 29 H -0.004 1.004 30 H 0.267 0.733 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.172 0.828 36 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.819 -10.130 16.275 19.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.335 5.335 4 C 0.139 3.861 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.195 1.195 12 H -0.208 1.208 13 C 0.284 3.716 14 O -0.480 6.480 15 C -0.155 4.155 16 C -0.060 4.060 17 C -0.134 4.134 18 C -0.190 4.190 19 N -0.256 5.256 20 C -0.093 4.093 21 N -0.164 5.164 22 H 0.274 0.726 23 H 0.056 0.944 24 H 0.112 0.888 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.118 0.882 28 H 0.038 0.962 29 H 0.014 0.986 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.189 0.811 36 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -2.282 -9.663 16.673 19.405 hybrid contribution 1.751 0.536 -1.530 2.387 sum -0.531 -9.127 15.143 17.688 Atomic orbital electron populations 1.22156 0.94691 1.03428 1.01731 1.21724 0.95235 0.81404 1.03799 1.48303 1.63757 1.15058 1.06343 1.18703 0.95270 0.91551 0.80614 1.21745 0.97856 1.31865 1.06515 0.92769 1.25875 1.02426 0.94487 0.96463 1.70061 1.37742 1.34301 1.14830 0.85355 0.78971 0.77990 0.78399 1.18971 1.19519 1.20808 1.21367 0.77001 0.86522 0.86685 1.90641 1.48360 1.20775 1.88226 1.21643 1.05426 0.99304 0.89109 1.19596 1.03011 0.96645 0.86737 1.21113 0.90831 1.04075 0.97334 1.22311 0.98393 1.04360 0.93893 1.70268 1.17291 1.16746 1.21320 1.25712 0.88518 1.02051 0.93038 1.43325 1.12575 1.41355 1.19109 0.72650 0.94366 0.88814 0.91953 0.91172 0.88173 0.96239 0.98551 0.92437 0.87491 0.86729 0.89835 0.91294 0.81052 0.73861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 10.24 71.98 0.74 -3.23 16 2 C 0.10 2.99 5.93 86.38 0.51 3.50 16 3 N -0.60 -25.06 2.46 -826.15 -2.03 -27.09 16 4 C 0.26 14.05 5.16 85.63 0.44 14.49 16 5 C -0.54 -31.09 9.39 25.60 0.24 -30.85 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.36 5.46 84.65 0.46 0.82 16 8 N -0.93 -56.38 13.29 21.45 0.28 -56.09 16 9 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 13 C 0.49 19.71 7.67 87.66 0.67 20.38 16 14 O -0.60 -30.06 15.56 -3.04 -0.05 -30.11 16 15 C -0.11 -2.95 4.23 29.85 0.13 -2.82 16 16 C -0.02 -0.51 5.06 29.85 0.15 -0.36 16 17 C -0.02 -0.36 6.49 40.95 0.27 -0.10 16 18 C -0.04 -0.99 11.79 83.52 0.98 -0.01 16 19 N -0.54 -12.78 11.25 -200.31 -2.25 -15.03 16 20 C 0.19 3.08 13.04 180.26 2.35 5.43 16 21 N -0.56 -8.80 6.15 -186.49 -1.15 -9.95 16 22 H 0.43 4.31 8.96 -92.71 -0.83 3.48 16 23 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.06 1.41 7.22 -2.38 -0.02 1.39 16 26 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 27 H 0.10 2.26 6.44 -2.38 -0.02 2.24 16 28 H 0.02 1.08 8.07 -2.38 -0.02 1.06 16 29 H 0.00 -0.23 7.42 -2.39 -0.02 -0.25 16 30 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 31 H 0.11 2.30 7.40 -2.39 -0.02 2.28 16 32 H 0.11 2.46 7.19 -2.39 -0.02 2.44 16 33 H 0.08 2.26 8.10 -2.39 -0.02 2.24 16 34 H 0.07 1.82 8.10 -2.38 -0.02 1.81 16 35 H 0.17 3.64 8.06 -2.91 -0.02 3.61 16 36 H 0.25 1.61 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -78.50 309.53 4.03 -74.47 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.25 Total: 9.90 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 6.95 Total: 7.25 kcal Atomic # 7 Polarization: -103.02 SS G_CDS: -5.15 Total: -108.16 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.05 Total: -30.11 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -78.50 4.03 -74.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354470704.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.096 kcal (2) G-P(sol) polarization free energy of solvation -78.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds