Wall clock time and date at job start Thu Apr 9 2020 12:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38212 * 119.98866 * 2 1 4 4 C 1.38436 * 119.97494 * 180.02562 * 3 2 1 5 5 F 1.35104 * 120.02506 * 179.97438 * 4 3 2 6 6 C 1.38484 * 119.94903 * 359.97438 * 4 3 2 7 7 C 1.38170 * 119.97395 * 359.74743 * 6 4 3 8 8 C 1.38226 * 119.98613 * 180.02562 * 2 1 3 9 9 C 1.50706 * 119.97234 * 359.96346 * 8 2 1 10 10 H 1.08991 * 109.47195 * 39.99518 * 9 8 2 11 11 C 1.53003 * 109.46748 * 279.99159 * 9 8 2 12 12 N 1.46903 * 109.46966 * 159.99941 * 9 8 2 13 13 C 1.46898 * 110.99673 * 204.99726 * 12 9 8 14 14 C 1.53006 * 109.47006 * 179.97438 * 13 12 9 15 15 C 1.50698 * 109.47184 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99933 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99912 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47017 * 89.99937 * 19 17 15 21 21 H 1.48507 * 109.47241 * 209.99826 * 19 17 15 22 22 H 1.48500 * 109.47209 * 329.99791 * 19 17 15 23 23 H 1.09001 * 109.47376 * 269.98428 * 1 2 3 24 24 H 1.09001 * 109.47487 * 29.98133 * 1 2 3 25 25 H 1.09001 * 109.47012 * 149.98166 * 1 2 3 26 26 H 1.08007 * 120.01233 * 359.97438 * 3 2 1 27 27 H 1.07999 * 120.00846 * 179.97438 * 6 4 3 28 28 H 1.07999 * 119.99227 * 180.25147 * 7 6 4 29 29 H 1.09004 * 109.46732 * 60.00749 * 11 9 8 30 30 H 1.08996 * 109.46768 * 180.02562 * 11 9 8 31 31 H 1.08995 * 109.47200 * 300.00465 * 11 9 8 32 32 H 1.00895 * 111.00497 * 81.03648 * 12 9 8 33 33 H 1.09001 * 109.47062 * 59.99745 * 13 12 9 34 34 H 1.08993 * 109.47084 * 299.99192 * 13 12 9 35 35 H 1.09001 * 109.46801 * 300.00064 * 14 13 12 36 36 H 1.09001 * 109.46998 * 59.99660 * 14 13 12 37 37 H 0.97007 * 120.00011 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1971 0.0000 4 6 3.5822 1.1968 -0.0005 5 9 4.2585 2.3663 -0.0011 6 6 4.2732 -0.0033 -0.0005 7 6 3.5805 -1.1988 0.0053 8 6 2.1978 -1.1972 -0.0005 9 6 1.4434 -2.5018 -0.0003 10 1 0.5796 -2.4222 -0.6602 11 6 0.9722 -2.8181 1.4206 12 7 2.3246 -3.5772 -0.4746 13 6 1.5449 -4.6828 -1.0470 14 6 2.4950 -5.7808 -1.5295 15 6 1.6951 -6.9153 -2.1160 16 1 0.6169 -6.8586 -2.1425 17 6 2.3398 -8.0250 -2.6199 18 7 1.6417 -9.0148 -3.1322 19 14 4.2047 -8.1225 -2.5748 20 1 4.6365 -8.7564 -1.3033 21 1 4.6858 -8.9347 -3.7212 22 1 4.7742 -6.7540 -2.6641 23 1 -0.3634 -0.0003 1.0277 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6578 2.1325 -0.0004 27 1 5.3532 -0.0047 -0.0014 28 1 4.1192 -2.1349 0.0094 29 1 0.3183 -2.0202 1.7726 30 1 0.4269 -3.7619 1.4209 31 1 1.8360 -2.8978 2.0806 32 1 2.9266 -3.9046 0.2659 33 1 0.9573 -4.3156 -1.8884 34 1 0.8771 -5.0880 -0.2868 35 1 3.1626 -5.3752 -2.2897 36 1 3.0829 -6.1480 -0.6882 37 1 2.0952 -9.7958 -3.4864 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378859118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:28:32 Heat of formation + Delta-G solvation = -36.458996 kcal Electronic energy + Delta-G solvation = -17839.779710 eV Core-core repulsion = 14916.716937 eV Total energy + Delta-G solvation = -2923.062773 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.92345 -39.77022 -36.59940 -33.52373 -32.86956 -31.59770 -29.51339 -28.15105 -27.19294 -24.26582 -23.40255 -21.78666 -20.64269 -20.21528 -17.28473 -16.88963 -16.43848 -15.97117 -15.63708 -14.87474 -14.53831 -14.20718 -14.06722 -13.92425 -13.33561 -13.22966 -13.09189 -12.81666 -12.55865 -12.45068 -12.18599 -11.73197 -11.58956 -11.39680 -11.07163 -11.02008 -10.76732 -10.13056 -9.90773 -9.75962 -9.25178 -8.94337 -8.55466 -8.48711 -8.01263 -6.05969 -4.04564 1.12457 1.21282 3.30817 3.38801 3.44154 3.53327 4.19621 4.41283 4.44893 4.69622 4.73622 4.85385 5.07742 5.13814 5.28280 5.28731 5.33112 5.43831 5.49658 5.61078 5.73921 5.83784 5.98402 6.00401 6.10137 6.12711 6.16870 6.23990 6.36858 6.57052 6.73384 6.88907 7.10764 7.34084 7.56345 7.70045 7.85245 8.50985 8.97887 9.56401 11.07345 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.030484 B = 0.004375 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.281764 B = 6398.033913 C = 7016.453976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.058 4.058 3 C -0.158 4.158 4 C 0.089 3.911 5 F -0.146 7.146 6 C -0.162 4.162 7 C -0.063 4.063 8 C -0.074 4.074 9 C 0.119 3.881 10 H 0.090 0.910 11 C -0.177 4.177 12 N -0.688 5.688 13 C 0.074 3.926 14 C -0.010 4.010 15 C -0.522 4.522 16 H 0.071 0.929 17 C 0.067 3.933 18 N -0.904 5.904 19 Si 0.881 3.119 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.263 1.263 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.141 0.859 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.336 0.664 33 H 0.065 0.935 34 H 0.024 0.976 35 H 0.025 0.975 36 H 0.009 0.991 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.807 19.270 9.124 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.059 4.059 3 C -0.177 4.177 4 C 0.070 3.930 5 F -0.125 7.125 6 C -0.181 4.181 7 C -0.081 4.081 8 C -0.075 4.075 9 C 0.009 3.991 10 H 0.108 0.892 11 C -0.236 4.236 12 N -0.319 5.319 13 C -0.054 4.054 14 C -0.048 4.048 15 C -0.560 4.560 16 H 0.089 0.911 17 C -0.134 4.134 18 N -0.543 5.543 19 Si 0.708 3.292 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.188 1.188 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.148 0.852 27 H 0.149 0.851 28 H 0.159 0.841 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.154 0.846 33 H 0.083 0.917 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.027 0.973 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.956 19.421 8.412 21.186 hybrid contribution 0.782 -0.361 0.730 1.130 sum 1.739 19.060 9.142 21.210 Atomic orbital electron populations 1.20892 0.90751 1.03321 1.02550 1.19533 0.96222 0.91633 0.98506 1.20881 0.92160 0.98955 1.05696 1.17685 0.90154 0.81186 1.03994 1.91472 1.80399 1.46472 1.94136 1.21159 1.00743 0.91331 1.04823 1.20941 0.93703 0.97647 0.95795 1.19862 0.93898 0.94132 0.99586 1.20442 0.94618 0.89019 0.95063 0.89166 1.22474 1.01838 1.02152 0.97140 1.60710 1.22162 1.12023 1.36959 1.21991 0.95869 0.90045 0.97474 1.19548 0.95603 0.93394 0.96233 1.21060 0.95022 1.00658 1.39299 0.91125 1.25004 0.98333 0.95447 0.94601 1.69915 1.35752 1.07710 1.40883 0.86754 0.86212 0.78559 0.77641 1.20400 1.21431 1.18763 0.90825 0.91448 0.90643 0.85178 0.85074 0.84148 0.92139 0.91809 0.92396 0.84571 0.91669 0.95733 0.95643 0.97304 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 8.92 36.01 0.32 -0.72 16 2 C -0.06 -0.65 5.87 -104.64 -0.61 -1.27 16 3 C -0.16 -1.76 9.68 -39.52 -0.38 -2.15 16 4 C 0.09 1.08 7.30 -39.42 -0.29 0.80 16 5 F -0.15 -1.83 17.27 2.25 0.04 -1.79 16 6 C -0.16 -1.92 10.03 -39.52 -0.40 -2.32 16 7 C -0.06 -0.78 9.32 -39.59 -0.37 -1.15 16 8 C -0.07 -0.92 5.09 -104.61 -0.53 -1.45 16 9 C 0.12 1.53 2.24 -68.86 -0.15 1.37 16 10 H 0.09 1.18 6.06 -51.93 -0.31 0.87 16 11 C -0.18 -1.99 9.09 37.16 0.34 -1.65 16 12 N -0.69 -10.70 5.09 -107.95 -0.55 -11.25 16 13 C 0.07 1.42 5.42 -3.82 -0.02 1.40 16 14 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 15 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 16 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 19 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 23 H 0.07 0.56 7.77 -51.93 -0.40 0.15 16 24 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 25 H 0.07 0.68 6.12 -51.93 -0.32 0.36 16 26 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 27 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.14 1.72 6.84 -52.49 -0.36 1.36 16 29 H 0.06 0.58 7.08 -51.93 -0.37 0.22 16 30 H 0.06 0.76 7.45 -51.93 -0.39 0.37 16 31 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 32 H 0.34 4.89 8.00 -39.29 -0.31 4.57 16 33 H 0.06 1.28 8.06 -51.93 -0.42 0.87 16 34 H 0.02 0.46 7.43 -51.93 -0.39 0.08 16 35 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 36 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 305.14 15.07 4.60 4.60 Total: -1.00 -30.38 305.14 -7.77 -38.15 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.31 Total: 0.99 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -2.65 Total: -20.69 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.22 Total: -38.26 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.38 -7.77 -38.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378859118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.687 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds