Wall clock time and date at job start Thu Apr 9 2020 12:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46506 * 109.46711 * 2 1 4 4 C 1.37091 * 119.99565 * 263.55553 * 3 2 1 5 5 H 1.08002 * 119.99263 * 188.39280 * 4 3 2 6 6 C 1.38952 * 120.00545 * 8.39028 * 4 3 2 7 7 N 1.31405 * 119.99600 * 25.17310 * 6 4 3 8 8 Si 1.86798 * 119.99923 * 205.17047 * 6 4 3 9 9 H 1.48507 * 109.46905 * 84.99084 * 8 6 4 10 10 H 1.48498 * 109.46887 * 204.98565 * 8 6 4 11 11 H 1.48495 * 109.47527 * 324.99063 * 8 6 4 12 12 C 1.34776 * 119.99796 * 83.55861 * 3 2 1 13 13 O 1.21294 * 119.99619 * 179.97438 * 12 3 2 14 14 C 1.50701 * 120.00151 * 359.97438 * 12 3 2 15 15 C 1.53004 * 109.46736 * 180.02562 * 14 12 3 16 16 H 1.09000 * 109.47084 * 304.99829 * 15 14 12 17 17 C 1.52995 * 109.47328 * 65.00186 * 15 14 12 18 18 N 1.46504 * 109.46813 * 185.00034 * 15 14 12 19 19 C 1.34946 * 126.04069 * 274.71842 * 18 15 14 20 20 C 1.35312 * 107.74553 * 179.84066 * 19 18 15 21 21 C 1.39866 * 107.92368 * 0.41809 * 20 19 18 22 22 N 1.30838 * 108.19835 * 359.74077 * 21 20 19 23 23 H 1.08999 * 109.47275 * 300.00122 * 1 2 3 24 24 H 1.08997 * 109.47334 * 60.00287 * 1 2 3 25 25 H 1.09001 * 109.46913 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47244 * 240.00329 * 2 1 3 27 27 H 1.08998 * 109.46812 * 119.99734 * 2 1 3 28 28 H 0.97005 * 120.00025 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.46780 * 60.00687 * 14 12 3 30 30 H 1.08998 * 109.47381 * 299.99871 * 14 12 3 31 31 H 1.09004 * 109.47202 * 299.99823 * 17 15 14 32 32 H 1.09001 * 109.46814 * 59.99699 * 17 15 14 33 33 H 1.08998 * 109.47122 * 179.97438 * 17 15 14 34 34 H 1.08001 * 126.11989 * 359.97438 * 19 18 15 35 35 H 1.08001 * 126.03478 * 180.15952 * 20 19 18 36 36 H 1.07996 * 125.89799 * 179.71475 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3724 1.9831 -1.1798 5 1 2.8579 2.9478 -1.1694 6 6 2.1067 1.3520 -2.3889 7 7 1.1283 0.4789 -2.4731 8 14 3.1405 1.7447 -3.8943 9 1 4.3647 0.9039 -3.8872 10 1 2.3539 1.4631 -5.1220 11 1 3.5248 3.1788 -3.8706 12 6 2.1194 2.0603 1.1599 13 8 2.5241 3.2037 1.1599 14 6 1.7297 1.3988 2.4566 15 6 1.9376 2.3800 3.6121 16 1 2.9656 2.7422 3.6007 17 6 0.9786 3.5619 3.4565 18 7 1.6732 1.7007 4.8830 19 6 0.4658 1.5500 5.4666 20 6 0.6478 0.8666 6.6202 21 6 2.0143 0.5986 6.7508 22 7 2.6300 1.0982 5.7100 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5137 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.9425 0.0385 -3.3173 29 1 2.3483 0.5153 2.6140 30 1 0.6809 1.1053 2.4140 31 1 1.1753 4.0672 2.5109 32 1 -0.0493 3.1995 3.4679 33 1 1.1265 4.2606 4.2799 34 1 -0.4770 1.9085 5.0806 35 1 -0.1251 0.5824 7.3189 36 1 2.4807 0.0709 7.5695 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424596280.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:28:53 Heat of formation + Delta-G solvation = 53.682516 kcal Electronic energy + Delta-G solvation = -18797.914749 eV Core-core repulsion = 15898.680766 eV Total energy + Delta-G solvation = -2899.233982 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.01217 -38.83171 -35.69529 -34.50018 -31.93213 -30.10240 -29.65117 -29.32987 -27.68210 -24.79569 -23.05366 -22.18421 -20.86545 -19.94920 -18.69792 -17.23663 -16.81099 -15.81075 -15.16952 -14.73717 -14.56093 -14.11851 -13.93252 -13.41889 -13.23839 -12.82572 -12.60246 -12.51580 -12.38425 -11.98441 -11.62160 -11.20726 -11.15718 -11.06692 -10.92071 -10.71074 -10.46426 -10.36538 -10.18514 -9.89894 -9.25325 -8.96196 -8.52892 -8.34054 -7.83411 -6.43071 -3.84350 2.10842 2.70407 3.00329 3.11826 3.23059 3.27413 3.78031 4.07986 4.76360 4.77333 4.99699 5.00922 5.17916 5.22473 5.44504 5.63935 5.72105 5.82665 5.87788 5.96713 6.01516 6.13564 6.22709 6.28076 6.49222 6.53365 6.58642 6.70129 6.82803 7.19229 7.26564 7.40422 7.66484 7.92481 8.01429 8.42975 9.10492 9.36881 9.90488 10.57529 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.039506 B = 0.005337 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.588152 B = 5244.826933 C = 5514.495094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.118 3.882 3 N -0.434 5.434 4 C -0.309 4.309 5 H 0.106 0.894 6 C 0.032 3.968 7 N -0.864 5.864 8 Si 0.919 3.081 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.270 1.270 12 C 0.444 3.556 13 O -0.594 6.594 14 C -0.139 4.139 15 C 0.176 3.824 16 H 0.108 0.892 17 C -0.162 4.162 18 N -0.357 5.357 19 C 0.057 3.943 20 C -0.286 4.286 21 C 0.034 3.966 22 N -0.299 5.299 23 H 0.023 0.977 24 H 0.092 0.908 25 H 0.038 0.962 26 H 0.103 0.897 27 H 0.032 0.968 28 H 0.268 0.732 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.169 0.831 35 H 0.142 0.858 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.476 -2.044 10.686 11.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.006 4.006 3 N -0.152 5.152 4 C -0.437 4.437 5 H 0.124 0.876 6 C -0.172 4.172 7 N -0.503 5.503 8 Si 0.746 3.254 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.194 1.194 12 C 0.232 3.768 13 O -0.480 6.480 14 C -0.181 4.181 15 C 0.074 3.926 16 H 0.126 0.874 17 C -0.220 4.220 18 N -0.139 5.139 19 C -0.090 4.090 20 C -0.315 4.315 21 C -0.151 4.151 22 N -0.120 5.120 23 H 0.042 0.958 24 H 0.111 0.889 25 H 0.057 0.943 26 H 0.121 0.879 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.128 0.872 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.187 0.813 35 H 0.160 0.840 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.207 -1.387 9.781 10.123 hybrid contribution -0.578 -0.346 -0.313 0.743 sum -2.785 -1.733 9.468 10.020 Atomic orbital electron populations 1.22109 0.96575 0.99928 1.01952 1.21479 0.94580 0.83668 1.00844 1.43796 1.54681 1.11196 1.05503 1.19740 1.36249 1.05636 0.82028 0.87646 1.25204 0.95897 0.97049 0.99009 1.70106 1.24800 1.28614 1.26804 0.86047 0.79954 0.79254 0.80132 1.20328 1.21095 1.19434 1.19498 0.85847 0.86845 0.84601 1.90480 1.52550 1.18276 1.86726 1.21951 1.03194 0.99120 0.93813 1.21045 1.02822 0.91334 0.77352 0.87397 1.22288 0.97823 0.96769 1.05169 1.49182 1.04338 1.42593 1.17823 1.22511 0.91304 1.00219 0.95014 1.21434 0.97032 1.11829 1.01246 1.23808 0.93453 1.00407 0.97449 1.77366 1.15442 1.15392 1.03820 0.95832 0.88889 0.94284 0.87940 0.95018 0.92177 0.90000 0.89767 0.87205 0.92639 0.92512 0.81342 0.83996 0.80501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.64 37.16 0.36 -2.63 16 2 C 0.12 2.58 5.07 -4.03 -0.02 2.56 16 3 N -0.43 -10.69 2.64 -114.81 -0.30 -11.00 16 4 C -0.31 -8.28 9.43 -14.94 -0.14 -8.42 16 5 H 0.11 2.99 7.31 -52.49 -0.38 2.61 16 6 C 0.03 0.80 4.90 -17.47 -0.09 0.71 16 7 N -0.86 -21.47 8.65 55.50 0.48 -20.99 16 8 Si 0.92 20.00 29.62 -169.99 -5.04 14.97 16 9 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 10 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 12 C 0.44 10.31 7.29 -10.99 -0.08 10.23 16 13 O -0.59 -15.25 13.56 5.55 0.08 -15.17 16 14 C -0.14 -2.58 4.11 -27.88 -0.11 -2.70 16 15 C 0.18 3.00 3.05 -67.93 -0.21 2.79 16 16 H 0.11 2.03 7.95 -51.93 -0.41 1.62 16 17 C -0.16 -2.51 8.57 37.15 0.32 -2.19 16 18 N -0.36 -5.71 3.53 -54.86 -0.19 -5.90 16 19 C 0.06 0.76 10.59 -17.23 -0.18 0.58 16 20 C -0.29 -3.54 10.80 -40.02 -0.43 -3.97 16 21 C 0.03 0.46 12.03 -17.37 -0.21 0.25 16 22 N -0.30 -4.98 12.58 30.62 0.39 -4.60 16 23 H 0.02 0.43 6.45 -51.93 -0.34 0.10 16 24 H 0.09 2.15 6.38 -51.93 -0.33 1.82 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.10 2.42 5.83 -51.93 -0.30 2.12 16 27 H 0.03 0.62 6.71 -51.93 -0.35 0.27 16 28 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 29 H 0.08 1.52 7.42 -51.93 -0.39 1.13 16 30 H 0.08 1.46 6.41 -51.93 -0.33 1.13 16 31 H 0.11 2.01 5.95 -51.93 -0.31 1.70 16 32 H 0.05 0.75 7.15 -51.93 -0.37 0.38 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.17 1.79 7.25 -52.49 -0.38 1.41 16 35 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.18 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 292.89 15.07 4.41 4.41 Total: -1.00 -29.05 292.89 -5.69 -34.74 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -4.72 Total: 6.33 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -0.80 Total: -2.79 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.37 Total: -42.49 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.08 Total: -15.17 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.04 Total: 14.97 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.05 -5.69 -34.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424596280.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.423 kcal (2) G-P(sol) polarization free energy of solvation -29.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds