Wall clock time and date at job start Thu Apr 9 2020 12:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38270 * 119.97574 * 2 1 4 4 C 1.38172 * 120.02408 * 180.30141 * 3 2 1 5 5 C 1.38483 * 119.97522 * 359.41225 * 4 3 2 6 6 F 1.35096 * 120.02661 * 180.30392 * 5 4 3 7 7 C 1.38447 * 119.94815 * 0.28511 * 5 4 3 8 8 C 1.50693 * 120.01413 * 180.02562 * 7 5 4 9 9 N 1.46901 * 109.47125 * 284.99937 * 8 7 5 10 10 C 1.46899 * 111.00018 * 293.95133 * 9 8 7 11 11 C 1.46906 * 110.99983 * 170.00009 * 9 8 7 12 12 C 1.52996 * 109.46876 * 189.99969 * 11 9 8 13 13 C 1.50706 * 109.47023 * 179.97438 * 12 11 9 14 14 H 1.07994 * 119.99588 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00012 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00034 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99736 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47259 * 60.00303 * 17 15 13 19 19 H 1.48504 * 109.46744 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47414 * 299.99947 * 17 15 13 21 21 C 1.38220 * 119.97159 * 359.97438 * 7 5 4 22 22 H 1.09004 * 109.47666 * 270.30754 * 1 2 3 23 23 H 1.09006 * 109.46898 * 30.30122 * 1 2 3 24 24 H 1.09001 * 109.47521 * 150.30260 * 1 2 3 25 25 H 1.07998 * 119.98571 * 0.02562 * 3 2 1 26 26 H 1.08002 * 120.01574 * 179.69763 * 4 3 2 27 27 H 1.09004 * 109.47465 * 44.99820 * 8 7 5 28 28 H 1.08999 * 109.47159 * 164.99828 * 8 7 5 29 29 H 1.09005 * 109.46693 * 60.00390 * 10 9 8 30 30 H 1.08995 * 109.46830 * 179.97438 * 10 9 8 31 31 H 1.08993 * 109.47226 * 300.00471 * 10 9 8 32 32 H 1.09006 * 109.46847 * 309.99845 * 11 9 8 33 33 H 1.09000 * 109.46916 * 69.99603 * 11 9 8 34 34 H 1.08995 * 109.47128 * 300.00019 * 12 11 9 35 35 H 1.08999 * 109.47189 * 60.00343 * 12 11 9 36 36 H 0.96996 * 120.00085 * 180.02562 * 16 15 13 37 37 H 1.07994 * 119.98566 * 180.02562 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5795 1.1989 -0.0063 5 6 4.2725 -0.0001 -0.0003 6 9 5.6235 -0.0001 -0.0002 7 6 3.5797 -1.1987 0.0060 8 6 4.3323 -2.5043 0.0131 9 7 4.8875 -2.7567 -1.3233 10 6 3.8172 -2.9756 -2.3053 11 6 5.8207 -3.8910 -1.3000 12 6 6.5626 -3.9685 -2.6358 13 6 7.5205 -5.1318 -2.6117 14 1 7.5924 -5.7538 -1.7318 15 6 8.3041 -5.4025 -3.7133 16 7 8.2160 -4.6453 -4.7850 17 14 9.4907 -6.8449 -3.6837 18 1 8.7344 -8.1037 -3.4633 19 1 10.2109 -6.9200 -4.9802 20 1 10.4707 -6.6572 -2.5838 21 6 2.1975 -1.1974 0.0069 22 1 -0.3634 0.0055 1.0277 23 1 -0.3633 0.8873 -0.5185 24 1 -0.3634 -0.8927 -0.5091 25 1 1.6572 2.1327 0.0004 26 1 4.1190 2.1346 -0.0112 27 1 5.1432 -2.4523 0.7397 28 1 3.6537 -3.3133 0.2834 29 1 3.1810 -2.0918 -2.3524 30 1 4.2560 -3.1597 -3.2859 31 1 3.2205 -3.8373 -2.0063 32 1 6.5398 -3.7533 -0.4924 33 1 5.2655 -4.8150 -1.1385 34 1 5.8436 -4.1060 -3.4432 35 1 7.1179 -3.0445 -2.7971 36 1 8.7670 -4.8360 -5.5601 37 1 1.6569 -2.1322 0.0122 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444738164.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:29:03 Heat of formation + Delta-G solvation = -49.765248 kcal Electronic energy + Delta-G solvation = -18010.288707 eV Core-core repulsion = 15086.648932 eV Total energy + Delta-G solvation = -2923.639776 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.74610 -40.39632 -38.46789 -35.30178 -33.60115 -32.79626 -31.14769 -28.42073 -27.37041 -27.03984 -24.61101 -23.33575 -21.84930 -21.23361 -18.61969 -18.39162 -17.55675 -16.78685 -16.62504 -16.16278 -16.13608 -15.96761 -15.09236 -14.86822 -14.51097 -14.41138 -14.20547 -14.15157 -13.81727 -13.35589 -13.03057 -12.82625 -12.75189 -12.62961 -12.55919 -12.40986 -12.21001 -11.92086 -11.79700 -11.35814 -11.26637 -10.54541 -9.92075 -9.35170 -9.20336 -8.20287 -6.32317 0.21795 0.28340 1.39479 1.43420 1.51259 2.39664 2.57774 3.12774 3.18972 3.44746 3.68460 3.80350 3.98074 4.21880 4.26759 4.34166 4.39348 4.47430 4.54407 4.67942 4.74032 4.76580 4.91734 4.97315 5.01964 5.04212 5.07385 5.26117 5.35998 5.37910 5.43844 5.59401 5.64104 5.76494 6.00730 6.07613 6.22516 6.30850 6.84428 7.36726 8.91883 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.040621 B = 0.004200 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.130001 B = 6664.790706 C = 6922.467804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.098 4.098 3 C -0.091 4.091 4 C -0.159 4.159 5 C 0.081 3.919 6 F -0.153 7.153 7 C -0.118 4.118 8 C 0.096 3.904 9 N -0.553 5.553 10 C 0.034 3.966 11 C 0.081 3.919 12 C 0.037 3.963 13 C -0.547 4.547 14 H 0.061 0.939 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.969 3.031 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.267 1.267 21 C -0.092 4.092 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.161 0.839 26 H 0.146 0.854 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.027 0.973 34 H -0.003 1.003 35 H -0.014 1.014 36 H 0.264 0.736 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.032 10.152 11.479 22.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.098 4.098 3 C -0.109 4.109 4 C -0.177 4.177 5 C 0.061 3.939 6 F -0.132 7.132 7 C -0.119 4.119 8 C -0.032 4.032 9 N -0.278 5.278 10 C -0.114 4.114 11 C -0.047 4.047 12 C -0.001 4.001 13 C -0.585 4.585 14 H 0.079 0.921 15 C -0.197 4.197 16 N -0.572 5.572 17 Si 0.793 3.207 18 H -0.189 1.189 19 H -0.207 1.207 20 H -0.192 1.192 21 C -0.110 4.110 22 H 0.102 0.898 23 H 0.100 0.900 24 H 0.091 0.909 25 H 0.179 0.821 26 H 0.164 0.836 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.015 0.985 35 H 0.005 0.995 36 H 0.073 0.927 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.648 10.577 11.170 22.667 hybrid contribution 1.003 -1.333 -0.178 1.677 sum -15.645 9.245 10.992 21.238 Atomic orbital electron populations 1.20827 0.88363 1.03945 1.03459 1.20306 0.98065 0.92270 0.99188 1.21235 0.92255 0.99333 0.98098 1.21386 0.96020 0.96605 1.03711 1.17972 0.76607 0.95263 1.04039 1.91468 1.30325 1.97474 1.93934 1.19905 0.94942 0.93456 1.03644 1.20949 0.97666 0.93697 0.90843 1.61979 1.17463 1.41830 1.06493 1.22299 0.93086 1.00207 0.95823 1.21981 0.93820 0.89768 0.99085 1.18915 0.93974 0.94930 0.92232 1.21598 1.22587 1.13784 1.00554 0.92061 1.25992 0.99070 0.99686 0.94947 1.70112 1.41433 1.40637 1.05034 0.85452 0.78655 0.79121 0.77508 1.18932 1.20744 1.19217 1.21054 0.91403 0.99522 0.99065 0.89808 0.90016 0.90918 0.82102 0.83586 0.90890 0.92293 0.90794 0.93186 0.94774 0.92242 0.95439 0.98471 0.99527 0.92731 0.83919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.01 71.24 0.71 -0.44 16 2 C -0.10 -1.71 5.88 -19.86 -0.12 -1.83 16 3 C -0.09 -1.59 9.70 22.26 0.22 -1.37 16 4 C -0.16 -3.62 10.03 22.31 0.22 -3.40 16 5 C 0.08 2.42 7.25 22.38 0.16 2.58 16 6 F -0.15 -5.55 16.76 44.97 0.75 -4.80 16 7 C -0.12 -3.32 4.42 -19.82 -0.09 -3.41 16 8 C 0.10 3.02 4.78 85.55 0.41 3.43 16 9 N -0.55 -21.73 4.75 -927.05 -4.41 -26.14 16 10 C 0.03 1.20 9.14 127.69 1.17 2.37 16 11 C 0.08 3.63 4.90 86.30 0.42 4.05 16 12 C 0.04 2.07 4.90 29.85 0.15 2.22 16 13 C -0.55 -32.29 9.11 25.60 0.23 -32.05 16 14 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 15 C 0.00 0.06 5.46 84.66 0.46 0.52 16 16 N -0.93 -58.55 13.29 21.45 0.28 -58.26 16 17 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 18 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 C -0.09 -1.98 8.78 22.26 0.20 -1.79 16 22 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 23 H 0.08 0.65 8.09 -2.38 -0.02 0.63 16 24 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 25 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 26 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 27 H 0.07 2.39 7.87 -2.38 -0.02 2.37 16 28 H 0.06 1.62 7.93 -2.39 -0.02 1.60 16 29 H 0.07 2.33 6.88 -2.38 -0.02 2.31 16 30 H 0.05 2.05 6.30 -2.39 -0.02 2.04 16 31 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 2.66 7.93 -2.38 -0.02 2.64 16 33 H 0.03 1.18 8.12 -2.39 -0.02 1.16 16 34 H 0.00 -0.18 6.47 -2.39 -0.02 -0.19 16 35 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 36 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 37 H 0.14 2.54 8.00 -2.91 -0.02 2.52 16 Total: -1.00 -70.10 312.29 3.84 -66.25 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 1.04 Total: 4.80 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: 4.15 Total: -29.11 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -4.12 Total: -84.40 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.75 Total: -4.80 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -70.10 3.84 -66.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444738164.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.489 kcal (2) G-P(sol) polarization free energy of solvation -70.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds