Wall clock time and date at job start Thu Apr 9 2020 12:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35047 * 126.40170 * 2 1 4 4 N 1.30492 * 108.70035 * 179.76746 * 3 2 1 5 5 C 1.34124 * 109.25834 * 0.38031 * 4 3 2 6 6 C 1.50701 * 125.99201 * 179.88538 * 5 4 3 7 7 O 1.42899 * 109.47741 * 179.69038 * 6 5 4 8 8 C 1.42895 * 114.00481 * 179.97438 * 7 6 5 9 9 C 1.53514 * 114.17121 * 210.00069 * 8 7 6 10 10 N 1.47483 * 87.92777 * 220.32774 * 9 8 7 11 11 C 1.46903 * 110.99717 * 138.70421 * 10 9 8 12 12 C 1.50694 * 109.47066 * 169.99804 * 11 10 9 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.47480 * 87.83900 * 27.00973 * 10 9 8 21 21 C 1.34668 * 108.02298 * 359.61830 * 5 4 3 22 22 H 1.09005 * 109.47366 * 269.99776 * 1 2 3 23 23 H 1.09000 * 109.47254 * 29.99813 * 1 2 3 24 24 H 1.09003 * 109.47062 * 150.00114 * 1 2 3 25 25 H 1.08003 * 125.64329 * 0.02562 * 3 2 1 26 26 H 1.09006 * 109.47069 * 59.68806 * 6 5 4 27 27 H 1.09002 * 109.46895 * 299.69000 * 6 5 4 28 28 H 1.09002 * 113.38161 * 343.08499 * 8 7 6 29 29 H 1.09000 * 113.47331 * 105.56452 * 9 8 7 30 30 H 1.08995 * 113.52785 * 335.10042 * 9 8 7 31 31 H 1.09007 * 109.47052 * 49.99488 * 11 10 9 32 32 H 1.09003 * 109.46808 * 290.00181 * 11 10 9 33 33 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 34 34 H 1.09004 * 113.47132 * 87.75237 * 20 10 9 35 35 H 1.09000 * 113.47538 * 218.21976 * 20 10 9 36 36 H 1.07993 * 126.59456 * 180.20151 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5095 0.6902 0.0050 5 6 3.5460 -0.6505 0.0000 6 6 4.7889 -1.5027 0.0008 7 8 4.4201 -2.8833 0.0015 8 6 5.5313 -3.7818 0.0017 9 6 5.2572 -5.1205 -0.6979 10 7 6.0147 -5.7791 0.3827 11 6 5.3571 -7.0235 0.8036 12 6 6.2726 -7.7889 1.7239 13 1 7.2458 -7.3911 1.9711 14 6 5.8682 -8.9978 2.2496 15 7 4.6834 -9.4825 1.9482 16 14 7.0033 -9.9469 3.3898 17 1 6.3386 -11.2048 3.8154 18 1 8.2647 -10.2701 2.6760 19 1 7.3088 -9.1201 4.5849 20 6 5.6321 -4.6564 1.2592 21 6 2.2772 -1.1019 0.0000 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 1.9335 2.1144 0.0004 26 1 5.3790 -1.2838 0.8908 27 1 5.3794 -1.2848 -0.8893 28 1 6.4695 -3.3096 -0.2898 29 1 5.7325 -5.2049 -1.6752 30 1 4.2021 -5.3933 -0.7172 31 1 5.1330 -7.6307 -0.0735 32 1 4.4311 -6.7859 1.3273 33 1 4.3991 -10.3331 2.3178 34 1 4.6767 -4.8048 1.7627 35 1 6.4249 -4.3478 1.9405 36 1 1.9612 -2.1345 -0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223555335.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:28:14 Heat of formation + Delta-G solvation = 37.727258 kcal Electronic energy + Delta-G solvation = -17639.320008 eV Core-core repulsion = 14739.394154 eV Total energy + Delta-G solvation = -2899.925854 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.98158 -41.03153 -37.98324 -35.11802 -34.87916 -31.65056 -30.62472 -28.64096 -27.15164 -26.80566 -26.11660 -23.46931 -22.08795 -21.38521 -20.76700 -18.63346 -18.12160 -17.78140 -16.92946 -16.81399 -16.29220 -16.18578 -15.47680 -15.07356 -14.94922 -14.81677 -14.36753 -14.03755 -13.71181 -13.64991 -13.42474 -13.21750 -12.94431 -12.58789 -12.53304 -12.26786 -12.06765 -11.63218 -11.22516 -10.98547 -10.63633 -10.60364 -10.36431 -9.73638 -9.31729 -8.23729 -6.34555 1.11207 1.39945 1.43918 1.52006 1.97849 2.07462 2.36425 2.44925 3.08322 3.40399 3.49098 3.78564 3.97817 4.03116 4.09959 4.33995 4.37362 4.44717 4.46609 4.52836 4.58185 4.68318 4.72889 4.73470 4.84086 4.90949 4.96116 5.08069 5.28800 5.55645 5.67127 5.74624 6.05277 6.19099 6.38417 6.41003 6.79241 7.08569 7.34922 8.87602 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.039795 B = 0.003552 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.430975 B = 7881.677217 C = 8187.652310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.465 5.465 3 C 0.187 3.813 4 N -0.528 5.528 5 C -0.033 4.033 6 C 0.151 3.849 7 O -0.381 6.381 8 C 0.086 3.914 9 C -0.006 4.006 10 N -0.479 5.479 11 C 0.177 3.823 12 C -0.530 4.530 13 H 0.061 0.939 14 C 0.000 4.000 15 N -0.935 5.935 16 Si 0.974 3.026 17 H -0.280 1.280 18 H -0.267 1.267 19 H -0.267 1.267 20 C -0.011 4.011 21 C -0.040 4.040 22 H 0.087 0.913 23 H 0.116 0.884 24 H 0.091 0.909 25 H 0.246 0.754 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.003 0.997 32 H -0.022 1.022 33 H 0.266 0.734 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.417 21.085 -4.639 23.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.147 5.147 3 C -0.095 4.095 4 N -0.249 5.249 5 C -0.161 4.161 6 C 0.073 3.927 7 O -0.299 6.299 8 C 0.027 3.973 9 C -0.135 4.135 10 N -0.203 5.203 11 C 0.050 3.950 12 C -0.568 4.568 13 H 0.079 0.921 14 C -0.198 4.198 15 N -0.575 5.575 16 Si 0.797 3.203 17 H -0.205 1.205 18 H -0.192 1.192 19 H -0.192 1.192 20 C -0.141 4.141 21 C -0.174 4.174 22 H 0.106 0.894 23 H 0.134 0.866 24 H 0.109 0.891 25 H 0.262 0.738 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.142 0.858 29 H 0.117 0.883 30 H 0.076 0.924 31 H 0.021 0.979 32 H -0.004 1.004 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -7.536 21.154 -4.689 22.941 hybrid contribution -1.150 -1.304 0.749 1.893 sum -8.686 19.851 -3.941 22.023 Atomic orbital electron populations 1.22382 0.73715 1.06429 1.04914 1.45686 1.09397 1.06127 1.53531 1.25714 0.84501 0.95211 1.04109 1.69973 1.22003 1.10804 1.22098 1.20440 0.94405 0.90887 1.10336 1.20324 0.91964 0.79012 1.01364 1.87831 1.32126 1.15463 1.94481 1.23705 0.90453 0.88044 0.95078 1.24110 0.98084 0.93023 0.98249 1.68849 1.44134 1.01663 1.05675 1.19914 0.92408 0.88269 0.94417 1.21410 1.02453 1.04905 1.28000 0.92121 1.25976 0.96964 0.98427 0.98403 1.70077 1.20836 1.20515 1.46067 0.85374 0.78604 0.77491 0.78782 1.20530 1.19180 1.19237 1.24296 0.99994 0.92394 0.97396 1.22580 0.90824 0.93535 1.10432 0.89430 0.86567 0.89066 0.73765 0.91776 0.90967 0.85755 0.88280 0.92399 0.97894 1.00380 0.92527 0.92929 0.89686 0.80476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 11.18 127.77 1.43 1.92 16 2 N -0.47 -8.15 3.15 -552.53 -1.74 -9.89 16 3 C 0.19 3.42 12.56 180.26 2.26 5.69 16 4 N -0.53 -14.05 11.25 -188.32 -2.12 -16.17 16 5 C -0.03 -0.92 7.07 41.39 0.29 -0.63 16 6 C 0.15 4.06 6.40 71.24 0.46 4.52 16 7 O -0.38 -11.73 9.68 -148.98 -1.44 -13.17 16 8 C 0.09 2.72 4.65 30.94 0.14 2.86 16 9 C -0.01 -0.21 7.52 83.58 0.63 0.42 16 10 N -0.48 -21.82 6.32 -932.86 -5.89 -27.71 16 11 C 0.18 9.87 4.57 85.55 0.39 10.26 16 12 C -0.53 -31.43 9.39 25.60 0.24 -31.19 16 13 H 0.06 3.55 7.81 -2.91 -0.02 3.52 16 14 C 0.00 0.02 5.46 84.66 0.46 0.48 16 15 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 16 Si 0.97 45.30 29.54 68.60 2.03 47.32 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 20 C -0.01 -0.45 7.55 83.58 0.63 0.18 16 21 C -0.04 -0.97 10.89 83.08 0.91 -0.06 16 22 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 23 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 24 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.25 1.99 8.06 -2.91 -0.02 1.97 16 26 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 28 H 0.12 3.30 7.88 -2.39 -0.02 3.28 16 29 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 30 H 0.06 2.26 7.91 -2.39 -0.02 2.24 16 31 H 0.00 0.18 8.08 -2.38 -0.02 0.16 16 32 H -0.02 -1.29 7.30 -2.39 -0.02 -1.30 16 33 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 34 H 0.05 2.26 7.42 -2.39 -0.02 2.24 16 35 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 36 H 0.18 4.28 7.86 -2.91 -0.02 4.26 16 Total: -1.00 -74.88 309.43 0.02 -74.86 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.05 Total: 7.52 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 7.84 Total: -5.55 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -9.47 Total: -110.98 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -1.44 Total: -13.17 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -74.88 0.02 -74.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223555335.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.588 kcal (2) G-P(sol) polarization free energy of solvation -74.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds