Wall clock time and date at job start Thu Apr 9 2020 12:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46507 * 2 1 4 4 C 1.47193 * 109.47170 * 239.99936 * 2 1 3 5 5 N 2.60795 * 109.47378 * 240.00093 * 2 1 3 6 6 C 1.50693 * 109.46794 * 119.99572 * 2 1 3 7 7 O 1.21286 * 119.99778 * 96.00357 * 6 2 1 8 8 N 1.34774 * 120.00572 * 275.99680 * 6 2 1 9 9 C 1.46500 * 120.00439 * 176.98707 * 8 6 2 10 10 C 1.46500 * 119.99815 * 356.99244 * 8 6 2 11 11 C 1.52999 * 109.47362 * 97.52632 * 10 8 6 12 12 H 1.08997 * 112.74073 * 319.87623 * 11 10 8 13 13 C 1.53614 * 113.55522 * 90.62701 * 11 10 8 14 14 C 1.53497 * 83.30858 * 140.82743 * 13 11 10 15 15 N 1.47066 * 113.46920 * 189.12471 * 11 10 8 16 16 C 1.36935 * 136.05298 * 38.08351 * 15 11 10 17 17 H 1.07998 * 120.00541 * 353.76145 * 16 15 11 18 18 C 1.38813 * 119.99915 * 173.76158 * 16 15 11 19 19 N 1.31615 * 119.99957 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00119 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46902 * 60.00510 * 20 18 16 22 22 H 1.48501 * 109.47162 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47526 * 300.00481 * 20 18 16 24 24 H 1.08992 * 109.47674 * 307.91371 * 1 2 3 25 25 H 1.09006 * 109.46895 * 67.91515 * 1 2 3 26 26 H 1.08996 * 109.47053 * 187.90720 * 1 2 3 27 27 H 1.08997 * 109.47003 * 275.09333 * 9 8 6 28 28 H 1.09001 * 109.46751 * 35.08748 * 9 8 6 29 29 H 1.08997 * 109.47589 * 155.09207 * 9 8 6 30 30 H 1.09003 * 109.46803 * 337.52850 * 10 8 6 31 31 H 1.09003 * 109.47038 * 217.53197 * 10 8 6 32 32 H 1.08994 * 114.20881 * 27.25114 * 13 11 10 33 33 H 1.09004 * 114.23641 * 254.39477 * 13 11 10 34 34 H 1.09000 * 113.46986 * 219.17093 * 14 13 11 35 35 H 1.08991 * 113.46852 * 88.78446 * 14 13 11 36 36 H 0.96998 * 120.00184 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2293 -2.1294 6 6 2.0322 -0.7103 1.2305 7 8 2.3379 -1.8825 1.1717 8 7 2.1419 -0.0430 2.3963 9 6 2.5671 -0.7492 3.6074 10 6 1.8358 1.3885 2.4525 11 6 0.4054 1.5848 2.9587 12 1 -0.2910 0.8542 2.5474 13 6 0.3086 1.7285 4.4850 14 6 -0.7516 2.7830 4.1385 15 7 -0.0692 2.9725 2.8496 16 6 0.0646 3.9921 1.9453 17 1 0.7272 3.8805 1.0998 18 6 -0.6514 5.1690 2.1154 19 7 -1.4585 5.3052 3.1461 20 14 -0.4684 6.5602 0.8822 21 1 -0.8749 6.0845 -0.4646 22 1 -1.3334 7.6974 1.2868 23 1 0.9481 7.0043 0.8436 24 1 -0.3634 0.6314 0.8107 25 1 -0.3633 0.3864 -0.9523 26 1 -0.3633 -1.0179 0.1414 27 1 1.7026 -1.2191 4.0764 28 1 3.2980 -1.5138 3.3444 29 1 3.0168 -0.0403 4.3025 30 1 1.9310 1.8198 1.4559 31 1 2.5322 1.8826 3.1301 32 1 1.2055 2.1336 4.9535 33 1 -0.0857 0.8485 4.9932 34 1 -0.7160 3.6621 4.7819 35 1 -1.7566 2.3724 4.0413 36 1 -1.9591 6.1275 3.2648 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231247109.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:28:25 Heat of formation + Delta-G solvation = 37.679044 kcal Electronic energy + Delta-G solvation = -18842.824588 eV Core-core repulsion = 15942.896643 eV Total energy + Delta-G solvation = -2899.927945 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.43858 -39.71445 -37.77976 -36.48311 -34.29123 -34.10519 -29.77636 -29.68902 -27.92296 -25.77572 -25.26712 -23.92815 -21.19054 -20.79562 -18.71029 -18.53752 -18.44578 -16.88822 -16.69337 -16.47684 -15.76396 -15.47432 -15.12713 -14.93816 -14.35789 -14.29330 -13.97802 -13.73849 -13.57947 -13.35154 -13.17122 -13.02645 -12.83641 -12.79634 -12.57804 -12.44146 -12.24220 -12.15344 -11.66090 -11.49405 -11.21603 -10.80045 -10.69116 -9.64435 -8.77239 -7.79300 -5.10108 1.33872 1.42880 1.55787 1.56632 1.61798 1.63566 2.09149 2.57508 2.77836 3.30826 3.44363 3.58852 3.91701 3.94910 4.02090 4.32801 4.37812 4.51966 4.57164 4.73780 4.76360 4.80476 4.91008 5.01596 5.06004 5.10443 5.16243 5.31134 5.39417 5.50234 5.69216 5.84449 6.04184 6.22935 6.41152 6.99511 7.02523 7.74951 8.74453 9.39508 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.021000 B = 0.007046 C = 0.005668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.022360 B = 3972.809124 C = 4939.223415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.012 4.012 3 H 0.162 0.838 4 C 0.246 3.754 5 N -0.465 5.465 6 C 0.526 3.474 7 O -0.575 6.575 8 N -0.592 5.592 9 C 0.083 3.917 10 C 0.106 3.894 11 C 0.130 3.870 12 H 0.057 0.943 13 C -0.140 4.140 14 C 0.145 3.855 15 N -0.622 5.622 16 C -0.210 4.210 17 H 0.100 0.900 18 C -0.067 4.067 19 N -0.956 5.956 20 Si 0.964 3.036 21 H -0.277 1.277 22 H -0.307 1.307 23 H -0.276 1.276 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.028 0.972 35 H 0.012 0.988 36 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.679 -7.843 1.736 9.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.036 4.036 3 H 0.179 0.821 4 C -0.072 4.072 5 N -0.141 5.141 6 C 0.313 3.687 7 O -0.455 6.455 8 N -0.323 5.323 9 C -0.059 4.059 10 C -0.017 4.017 11 C 0.024 3.976 12 H 0.074 0.926 13 C -0.178 4.178 14 C 0.019 3.981 15 N -0.348 5.348 16 C -0.338 4.338 17 H 0.118 0.882 18 C -0.260 4.260 19 N -0.606 5.606 20 Si 0.793 3.207 21 H -0.203 1.203 22 H -0.234 1.234 23 H -0.202 1.202 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.047 0.953 35 H 0.030 0.970 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 6.381 -8.933 0.186 10.979 hybrid contribution -0.677 1.299 -0.203 1.479 sum 5.704 -7.633 -0.017 9.529 Atomic orbital electron populations 1.21864 0.88091 1.04125 1.05780 1.19105 1.00003 1.00679 0.83835 0.82074 1.28617 0.92359 0.92469 0.93798 1.81158 1.09791 1.09789 1.13395 1.20115 0.77494 0.86360 0.84780 1.90727 1.51401 1.17633 1.85695 1.47785 1.65256 1.10450 1.08764 1.21841 1.00609 0.97958 0.85468 1.22141 0.97034 0.78441 1.04091 1.22741 0.93839 0.86665 0.94400 0.92553 1.23614 0.99749 0.98709 0.95746 1.21947 0.93564 0.95319 0.87256 1.45951 1.58467 1.07971 1.22454 1.19314 1.19472 0.91624 1.03438 0.88190 1.25509 0.99500 1.00964 1.00055 1.70008 1.32336 1.26699 1.31541 0.85366 0.77268 0.79020 0.78999 1.20334 1.23441 1.20155 0.89164 0.89216 0.91305 0.91721 0.91710 0.88326 0.89115 0.88368 0.89169 0.89651 0.95318 0.97006 0.94777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.14 71.98 0.66 -2.30 16 2 C -0.01 -0.27 2.41 -13.35 -0.03 -0.31 16 3 H 0.16 2.88 6.00 -2.38 -0.01 2.87 16 4 C 0.25 6.84 14.00 89.44 1.25 8.10 16 5 N -0.47 -15.25 18.54 20.00 0.37 -14.88 16 6 C 0.53 13.49 6.77 87.66 0.59 14.08 16 7 O -0.57 -18.89 15.88 -3.05 -0.05 -18.94 16 8 N -0.59 -12.86 2.88 -846.76 -2.44 -15.30 16 9 C 0.08 1.49 10.42 127.77 1.33 2.82 16 10 C 0.11 2.44 5.25 86.38 0.45 2.90 16 11 C 0.13 3.81 3.59 41.84 0.15 3.96 16 12 H 0.06 1.65 6.16 -2.39 -0.01 1.64 16 13 C -0.14 -3.95 8.02 30.97 0.25 -3.70 16 14 C 0.15 5.97 7.26 83.19 0.60 6.57 16 15 N -0.62 -25.90 3.65 -713.23 -2.60 -28.50 16 16 C -0.21 -9.85 10.55 84.03 0.89 -8.96 16 17 H 0.10 4.18 7.83 -2.91 -0.02 4.16 16 18 C -0.07 -3.47 5.50 84.86 0.47 -3.01 16 19 N -0.96 -54.12 11.67 21.65 0.25 -53.87 16 20 Si 0.96 41.91 29.55 68.60 2.03 43.94 16 21 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.31 -14.10 7.11 99.48 0.71 -13.39 16 23 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 24 H 0.09 2.10 5.14 -2.39 -0.01 2.09 16 25 H 0.09 1.71 8.12 -2.38 -0.02 1.69 16 26 H 0.07 1.45 8.13 -2.39 -0.02 1.43 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.28 7.54 -2.39 -0.02 1.26 16 29 H 0.10 1.32 7.92 -2.39 -0.02 1.30 16 30 H 0.09 2.02 5.62 -2.39 -0.01 2.01 16 31 H 0.10 2.12 7.66 -2.39 -0.02 2.10 16 32 H 0.09 2.36 7.90 -2.39 -0.02 2.34 16 33 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.03 1.37 7.41 -2.39 -0.02 1.35 16 35 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.24 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -66.95 304.55 5.26 -61.69 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: 1.08 Total: 5.72 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 6.61 Total: 20.15 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -4.41 Total: -112.54 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.05 Total: -18.94 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -66.95 5.26 -61.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231247109.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.365 kcal (2) G-P(sol) polarization free energy of solvation -66.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds