Wall clock time and date at job start Thu Apr 9 2020 12:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47171 * 2 1 4 4 H 1.09005 * 109.47029 * 54.90947 * 3 2 1 5 5 C 1.50701 * 109.47158 * 174.91253 * 3 2 1 6 6 H 1.07997 * 119.99804 * 120.00195 * 5 3 2 7 7 C 1.37875 * 119.99994 * 299.99758 * 5 3 2 8 8 N 1.31511 * 119.99855 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99779 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.46899 * 90.00000 * 9 7 5 11 11 H 1.48500 * 109.46943 * 209.99365 * 9 7 5 12 12 H 1.48495 * 109.47234 * 329.99833 * 9 7 5 13 13 N 1.46900 * 109.47219 * 294.91513 * 3 2 1 14 14 C 1.46892 * 111.00537 * 157.44398 * 13 3 2 15 15 H 1.09005 * 109.47344 * 31.20501 * 14 13 3 16 16 C 1.52998 * 109.47020 * 271.20576 * 14 13 3 17 17 F 1.39909 * 109.47189 * 65.79044 * 16 14 13 18 18 C 1.50692 * 109.47586 * 151.20517 * 14 13 3 19 19 C 1.38237 * 119.99996 * 39.72585 * 18 14 13 20 20 C 1.38240 * 120.00003 * 179.79012 * 19 18 14 21 21 C 1.38240 * 119.99865 * 0.44099 * 20 19 18 22 22 C 1.38231 * 119.99946 * 359.81129 * 21 20 19 23 23 C 1.38234 * 120.00269 * 359.97438 * 22 21 20 24 24 H 1.09003 * 109.46955 * 185.48814 * 1 2 3 25 25 H 1.08999 * 109.47261 * 305.48124 * 1 2 3 26 26 H 1.08995 * 109.47174 * 65.48731 * 1 2 3 27 27 H 1.09001 * 109.46813 * 239.99752 * 2 1 3 28 28 H 1.09002 * 109.47197 * 120.00335 * 2 1 3 29 29 H 0.97004 * 119.99951 * 180.02562 * 8 7 5 30 30 H 1.00903 * 111.00258 * 33.48644 * 13 3 2 31 31 H 1.09004 * 109.47115 * 185.78663 * 16 14 13 32 32 H 1.08997 * 109.47249 * 305.78771 * 16 14 13 33 33 H 1.07994 * 119.99903 * 359.97438 * 19 18 14 34 34 H 1.07998 * 120.00078 * 180.27332 * 20 19 18 35 35 H 1.07996 * 119.99699 * 179.83429 * 21 20 19 36 36 H 1.08006 * 119.99924 * 179.97438 * 22 21 20 37 37 H 1.07995 * 120.00351 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6041 1.9820 0.8409 5 6 3.5418 1.4443 0.1260 6 1 4.1481 1.8885 -0.6495 7 6 4.1415 0.8790 1.2313 8 7 5.4520 0.8802 1.3410 9 14 3.0926 0.1102 2.5723 10 1 2.8723 -1.3261 2.2659 11 1 3.7880 0.2367 3.8783 12 1 1.7839 0.8087 2.6386 13 7 1.6532 2.0986 -1.2561 14 6 1.6304 3.5593 -1.1018 15 1 2.3792 3.8589 -0.3685 16 6 0.2450 4.0002 -0.6254 17 9 0.0148 3.5041 0.6623 18 6 1.9364 4.2092 -2.4265 19 6 1.4119 3.6829 -3.5922 20 6 1.6891 4.2816 -4.8070 21 6 2.4983 5.4014 -4.8569 22 6 3.0270 5.9246 -3.6918 23 6 2.7462 5.3285 -2.4766 24 1 -0.3633 -1.0230 0.0983 25 1 -0.3634 0.5965 0.8368 26 1 -0.3633 0.4264 -0.9350 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 5.8741 0.4822 2.1184 30 1 0.7626 1.7557 -1.5839 31 1 0.1958 5.0890 -0.6094 32 1 -0.5135 3.6122 -1.3052 33 1 0.7832 2.8057 -3.5536 34 1 1.2758 3.8730 -5.7172 35 1 2.7170 5.8675 -5.8062 36 1 3.6595 6.7992 -3.7309 37 1 3.1596 5.7370 -1.5664 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156096.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:28:55 Heat of formation + Delta-G solvation = -46.294324 kcal Electronic energy + Delta-G solvation = -18866.200925 eV Core-core repulsion = 15942.711660 eV Total energy + Delta-G solvation = -2923.489265 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.138 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.64932 -40.29025 -38.30093 -35.21387 -33.98967 -31.73733 -31.27683 -29.48083 -28.22215 -24.71323 -24.09176 -23.34691 -21.65529 -21.48785 -18.88110 -17.93294 -17.36354 -17.02325 -16.76421 -16.36801 -15.82196 -15.77316 -15.45268 -15.13901 -14.67475 -14.16345 -14.08833 -13.69095 -13.59935 -13.44576 -13.41866 -12.83502 -12.67955 -12.41342 -12.14685 -12.01354 -11.98526 -11.70230 -11.57770 -11.26549 -11.19999 -10.67893 -9.71159 -9.54304 -9.03688 -8.27650 -6.28203 0.52986 0.61430 1.26483 1.33507 1.43303 2.30966 2.93075 3.05857 3.34210 3.67546 3.86913 4.03577 4.13197 4.15776 4.28162 4.28904 4.35755 4.37863 4.44895 4.53527 4.73909 4.83361 4.89082 4.95392 5.10057 5.11736 5.17482 5.22001 5.27508 5.45797 5.65821 5.70185 5.73122 5.81206 6.06851 6.22055 6.44890 6.77487 6.91744 7.35903 8.89791 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.023218 B = 0.007229 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.646238 B = 3872.358277 C = 4327.694359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 C 0.192 3.808 4 H 0.006 0.994 5 C -0.496 4.496 6 H 0.031 0.969 7 C 0.009 3.991 8 N -0.952 5.952 9 Si 0.945 3.055 10 H -0.264 1.264 11 H -0.300 1.300 12 H -0.252 1.252 13 N -0.666 5.666 14 C 0.101 3.899 15 H 0.064 0.936 16 C 0.039 3.961 17 F -0.230 7.230 18 C -0.075 4.075 19 C -0.106 4.106 20 C -0.126 4.126 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.134 4.134 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.037 0.963 29 H 0.263 0.737 30 H 0.337 0.663 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.282 7.435 -9.800 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C 0.083 3.917 4 H 0.024 0.976 5 C -0.535 4.535 6 H 0.049 0.951 7 C -0.188 4.188 8 N -0.593 5.593 9 Si 0.772 3.228 10 H -0.191 1.191 11 H -0.228 1.228 12 H -0.176 1.176 13 N -0.298 5.298 14 C -0.010 4.010 15 H 0.082 0.918 16 C -0.017 4.017 17 F -0.211 7.211 18 C -0.076 4.076 19 C -0.124 4.124 20 C -0.144 4.144 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.152 4.152 24 H 0.087 0.913 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.157 0.843 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.146 0.854 34 H 0.163 0.837 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.524 7.341 -9.922 17.584 hybrid contribution -0.234 -0.393 1.615 1.679 sum -12.759 6.948 -8.307 16.735 Atomic orbital electron populations 1.21820 0.94375 1.02281 1.01949 1.21980 0.96360 0.98206 1.00712 1.19487 0.93335 0.91179 0.87665 0.97631 1.21301 0.91757 1.35978 1.04440 0.95109 1.25764 0.95812 0.96829 1.00361 1.70050 1.10693 1.47765 1.30779 0.85910 0.79478 0.79621 0.77768 1.19051 1.22811 1.17578 1.60411 1.35076 1.02519 1.31778 1.20913 0.96003 0.89308 0.94784 0.91806 1.22946 0.98073 1.01076 0.79611 1.92738 1.95729 1.90061 1.42616 1.19654 0.98355 0.95210 0.94366 1.21084 1.00171 0.99219 0.91914 1.21451 0.98751 0.96205 0.97965 1.21467 0.97472 0.96728 0.98862 1.21346 1.00236 1.00732 0.92153 1.21207 0.98560 0.96495 0.98956 0.91302 0.93612 0.91067 0.91847 0.94486 0.92759 0.84288 0.88745 0.88197 0.85386 0.83736 0.83608 0.84322 0.86806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 9.63 71.98 0.69 -3.94 16 2 C -0.13 -5.63 5.04 30.59 0.15 -5.48 16 3 C 0.19 9.02 1.35 44.17 0.06 9.08 16 4 H 0.01 0.30 5.28 -2.38 -0.01 0.29 16 5 C -0.50 -29.22 8.96 25.60 0.23 -28.99 16 6 H 0.03 2.06 8.06 -2.91 -0.02 2.03 16 7 C 0.01 0.52 5.45 84.65 0.46 0.98 16 8 N -0.95 -61.44 13.96 21.45 0.30 -61.14 16 9 Si 0.94 46.75 24.41 68.60 1.67 48.43 16 10 H -0.26 -12.36 6.83 99.48 0.68 -11.68 16 11 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 12 H -0.25 -11.82 6.53 99.48 0.65 -11.17 16 13 N -0.67 -26.06 5.43 -477.18 -2.59 -28.65 16 14 C 0.10 3.59 2.47 44.17 0.11 3.70 16 15 H 0.06 2.79 7.37 -2.38 -0.02 2.77 16 16 C 0.04 1.11 6.91 71.98 0.50 1.61 16 17 F -0.23 -8.13 15.56 44.97 0.70 -7.43 16 18 C -0.08 -2.36 4.96 -19.87 -0.10 -2.46 16 19 C -0.11 -2.86 9.33 22.27 0.21 -2.65 16 20 C -0.13 -2.85 10.05 22.27 0.22 -2.63 16 21 C -0.13 -2.77 10.05 22.27 0.22 -2.54 16 22 C -0.13 -3.12 10.05 22.27 0.22 -2.89 16 23 C -0.13 -4.01 9.67 22.27 0.22 -3.79 16 24 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.07 1.89 6.62 -2.39 -0.02 1.88 16 27 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.04 1.67 3.21 -2.39 -0.01 1.66 16 29 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 30 H 0.34 10.94 5.72 -89.69 -0.51 10.43 16 31 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.10 2.25 8.01 -2.39 -0.02 2.23 16 33 H 0.13 3.16 7.36 -2.91 -0.02 3.14 16 34 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 35 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 36 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 37 H 0.11 3.42 8.04 -2.91 -0.02 3.40 16 Total: -1.00 -71.01 298.45 3.75 -67.27 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 0.46 Total: 21.53 kcal Atomic # 6 Polarization: -43.20 SS G_CDS: 3.20 Total: -40.00 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -2.29 Total: -89.79 kcal Atomic # 9 Polarization: -8.13 SS G_CDS: 0.70 Total: -7.43 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.67 Total: 48.43 kcal Total: -71.01 3.75 -67.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156096.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.973 kcal (2) G-P(sol) polarization free energy of solvation -71.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds