Wall clock time and date at job start Thu Apr 9 2020 12:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47234 * 2 1 4 4 H 1.08996 * 109.46922 * 305.94556 * 3 2 1 5 5 C 1.50703 * 109.47114 * 185.94547 * 3 2 1 6 6 H 1.07994 * 120.00374 * 239.99703 * 5 3 2 7 7 C 1.37884 * 119.99951 * 60.00082 * 5 3 2 8 8 N 1.31511 * 119.99809 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00042 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47144 * 89.99833 * 9 7 5 11 11 H 1.48497 * 109.47114 * 210.00140 * 9 7 5 12 12 H 1.48505 * 109.47088 * 329.99762 * 9 7 5 13 13 N 1.46495 * 109.47183 * 65.94912 * 3 2 1 14 14 C 1.37611 * 120.00416 * 58.84932 * 13 3 2 15 15 N 1.30356 * 119.99698 * 6.48539 * 14 13 3 16 16 N 1.37508 * 120.00745 * 186.48576 * 14 13 3 17 17 C 1.40144 * 119.99816 * 238.85327 * 13 3 2 18 18 C 1.40412 * 125.97371 * 10.80798 * 17 13 3 19 19 C 1.35246 * 107.86382 * 179.97438 * 18 17 13 20 20 C 1.50707 * 126.06632 * 180.02562 * 19 18 17 21 21 N 1.34962 * 107.86574 * 359.97438 * 19 18 17 22 22 H 0.96998 * 125.97952 * 180.02562 * 21 19 18 23 23 N 1.31221 * 125.97308 * 190.49325 * 17 13 3 24 24 H 1.08994 * 109.47274 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46738 * 300.00156 * 1 2 3 26 26 H 1.09004 * 109.47044 * 59.99532 * 1 2 3 27 27 H 1.08998 * 109.47612 * 120.00070 * 2 1 3 28 28 H 1.08996 * 109.46999 * 240.00197 * 2 1 3 29 29 H 0.97002 * 120.00296 * 180.02562 * 8 7 5 30 30 H 0.96997 * 120.00153 * 5.50352 * 15 14 13 31 31 H 0.97010 * 119.99786 * 18.36004 * 16 14 13 32 32 H 0.96997 * 120.00534 * 198.36599 * 16 14 13 33 33 H 1.07999 * 126.06960 * 359.97438 * 18 17 13 34 34 H 1.08999 * 109.46714 * 90.00431 * 20 19 18 35 35 H 1.08998 * 109.46817 * 209.99472 * 20 19 18 36 36 H 1.08994 * 109.47412 * 330.00417 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5924 1.9861 -0.8320 5 6 3.5398 1.4450 -0.1472 6 1 4.1572 1.8853 0.6218 7 6 4.1239 0.8852 -1.2637 8 7 3.3722 0.3495 -2.2004 9 14 5.9830 0.8877 -1.4458 10 1 6.5414 -0.3478 -0.8399 11 1 6.3392 0.9370 -2.8866 12 1 6.5464 2.0758 -0.7557 13 7 1.6721 2.0905 1.2613 14 6 2.1046 1.5645 2.4570 15 7 2.9434 0.5667 2.4646 16 7 1.6521 2.0912 3.6439 17 6 0.8795 3.2463 1.2501 18 6 0.1968 3.7675 0.1393 19 6 -0.4507 4.8861 0.5377 20 6 -1.3102 5.7699 -0.3290 21 7 -0.1912 5.0697 1.8494 22 1 -0.5254 5.7947 2.4003 23 7 0.6411 4.0274 2.2772 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.7830 -0.0447 -2.9857 30 1 3.3243 0.2469 1.6318 31 1 0.8490 2.6351 3.6582 32 1 2.1359 1.9190 4.4667 33 1 0.1898 3.3493 -0.8564 34 1 -2.3418 5.4195 -0.2950 35 1 -1.2627 6.7953 0.0378 36 1 -0.9481 5.7343 -1.3564 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164466.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:29:13 Heat of formation + Delta-G solvation = 115.947177 kcal Electronic energy + Delta-G solvation = -19299.599888 eV Core-core repulsion = 16435.358655 eV Total energy + Delta-G solvation = -2864.241233 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.144 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.86518 -38.17348 -34.47817 -32.85703 -31.97625 -31.08742 -30.36789 -28.95888 -27.06992 -26.51171 -23.20118 -21.66364 -20.58191 -19.76968 -18.67841 -17.32865 -16.71886 -15.99696 -15.60047 -14.82757 -14.67508 -13.89917 -13.78234 -13.39666 -13.35574 -12.79721 -12.70678 -12.50313 -12.09402 -11.96642 -11.65990 -11.27510 -10.96235 -10.71364 -10.33109 -10.18810 -10.07612 -9.84549 -9.61436 -9.16869 -8.61549 -8.27199 -8.21018 -7.70435 -6.76795 -6.13833 -4.23600 2.21492 3.00066 3.22410 3.28136 3.34491 3.40058 3.93275 4.29258 4.38669 4.82008 5.01550 5.12873 5.15993 5.47688 5.57217 5.82186 6.10706 6.19517 6.23491 6.26905 6.46893 6.65225 6.89936 6.92607 7.09399 7.11771 7.38997 7.47611 7.65445 7.70398 7.92887 7.97372 8.17363 8.25993 8.60761 8.78660 8.95622 9.41945 9.91570 10.87710 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.020512 B = 0.008058 C = 0.007316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.718005 B = 3474.073828 C = 3826.318007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.146 4.146 3 C 0.283 3.717 4 H 0.058 0.942 5 C -0.536 4.536 6 H 0.065 0.935 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.538 5.538 14 C 0.631 3.369 15 N -0.818 5.818 16 N -0.856 5.856 17 C 0.343 3.657 18 C -0.282 4.282 19 C 0.096 3.904 20 C -0.090 4.090 21 N -0.485 5.485 22 H 0.432 0.568 23 N -0.357 5.357 24 H 0.035 0.965 25 H 0.034 0.966 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.107 0.893 29 H 0.265 0.735 30 H 0.369 0.631 31 H 0.403 0.597 32 H 0.401 0.599 33 H 0.148 0.852 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.536 8.295 3.222 13.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.186 4.186 3 C 0.183 3.817 4 H 0.076 0.924 5 C -0.575 4.575 6 H 0.083 0.917 7 C -0.133 4.133 8 N -0.521 5.521 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.259 5.259 14 C 0.263 3.737 15 N -0.470 5.470 16 N -0.416 5.416 17 C 0.086 3.914 18 C -0.314 4.314 19 C -0.032 4.032 20 C -0.148 4.148 21 N -0.194 5.194 22 H 0.275 0.725 23 N -0.191 5.191 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.125 0.875 29 H 0.075 0.925 30 H 0.195 0.805 31 H 0.238 0.762 32 H 0.231 0.769 33 H 0.166 0.834 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.848 7.696 4.770 12.659 hybrid contribution 0.435 0.694 -1.423 1.642 sum -8.412 8.390 3.347 12.343 Atomic orbital electron populations 1.21729 0.98729 0.99329 0.99982 1.22169 0.92661 0.99587 1.04133 1.19022 0.95095 0.89531 0.78079 0.92426 1.21425 0.90946 1.39131 1.05952 0.91686 1.24868 0.98696 0.94586 0.95158 1.69855 1.35145 1.37838 1.09255 0.86441 0.84831 0.78814 0.77138 1.20239 1.21107 1.19873 1.45734 1.49703 1.22661 1.07814 1.18841 0.88500 0.86890 0.79485 1.69522 1.21769 1.16603 1.39063 1.41935 1.33314 1.60312 1.06032 1.19639 0.91379 0.88488 0.91930 1.20963 1.08805 1.00705 1.00956 1.20865 0.99092 0.97196 0.86089 1.20419 0.98275 0.97179 0.98953 1.45762 1.42321 1.23926 1.07436 0.72545 1.77035 1.19219 1.01891 1.20994 0.94615 0.94671 0.93740 0.92764 0.87503 0.92476 0.80476 0.76202 0.76934 0.83434 0.90425 0.91426 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.81 37.16 0.36 -2.50 16 2 C -0.15 -3.45 4.99 -26.73 -0.13 -3.59 16 3 C 0.28 6.91 1.96 -69.08 -0.14 6.77 16 4 H 0.06 1.47 6.21 -51.93 -0.32 1.15 16 5 C -0.54 -14.36 6.46 -34.44 -0.22 -14.58 16 6 H 0.06 1.85 7.34 -52.49 -0.39 1.46 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -23.60 11.29 55.43 0.63 -22.97 16 9 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.54 -12.13 2.20 -110.74 -0.24 -12.37 16 14 C 0.63 14.25 7.90 -319.85 -2.53 11.72 16 15 N -0.82 -19.88 12.67 30.18 0.38 -19.50 16 16 N -0.86 -15.97 8.46 30.17 0.26 -15.72 16 17 C 0.34 7.00 7.40 -154.40 -1.14 5.86 16 18 C -0.28 -5.08 9.85 -39.83 -0.39 -5.47 16 19 C 0.10 1.34 7.20 -82.28 -0.59 0.75 16 20 C -0.09 -0.81 10.43 36.01 0.38 -0.43 16 21 N -0.49 -6.72 7.35 33.47 0.25 -6.48 16 22 H 0.43 4.26 8.96 -182.62 -1.64 2.62 16 23 N -0.36 -6.45 9.69 31.44 0.30 -6.15 16 24 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.03 0.71 7.78 -51.92 -0.40 0.31 16 26 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.05 1.33 5.55 -51.93 -0.29 1.04 16 28 H 0.11 2.74 5.93 -51.93 -0.31 2.43 16 29 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.37 9.59 4.39 -40.82 -0.18 9.41 16 31 H 0.40 7.10 6.09 -40.82 -0.25 6.85 16 32 H 0.40 6.68 8.95 -40.82 -0.37 6.32 16 33 H 0.15 2.68 6.99 -52.49 -0.37 2.32 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 291.03 15.07 4.39 4.39 Total: -1.00 -29.86 291.03 -9.32 -39.18 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: -5.75 Total: 23.19 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -4.50 Total: 0.32 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: 1.57 Total: -83.18 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.86 -9.32 -39.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164466.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.130 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds