Wall clock time and date at job start Thu Apr 9 2020 12:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.47201 * 109.47361 * 120.00280 * 2 1 3 5 5 N 2.60794 * 109.47079 * 120.00271 * 2 1 3 6 6 C 1.50703 * 109.46771 * 240.00448 * 2 1 3 7 7 O 1.21283 * 119.99488 * 239.99768 * 6 2 1 8 8 N 1.34777 * 120.00290 * 60.00208 * 6 2 1 9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 2 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 H 1.09002 * 109.47682 * 64.99618 * 10 9 8 12 12 N 1.46506 * 109.47012 * 304.99483 * 10 9 8 13 13 C 1.36937 * 119.99934 * 154.99714 * 12 10 9 14 14 H 1.07998 * 120.00035 * 0.02562 * 13 12 10 15 15 C 1.38810 * 120.00229 * 180.02562 * 13 12 10 16 16 N 1.31614 * 120.00215 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99755 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 89.99844 * 17 15 13 19 19 H 1.48504 * 109.47093 * 210.00291 * 17 15 13 20 20 H 1.48497 * 109.47085 * 329.99855 * 17 15 13 21 21 C 1.53003 * 109.47530 * 184.99929 * 10 9 8 22 22 C 1.52996 * 117.49852 * 248.74727 * 21 10 9 23 23 C 1.52995 * 117.50233 * 180.08435 * 21 10 9 24 24 H 1.09008 * 109.47076 * 59.99403 * 1 2 3 25 25 H 1.08992 * 109.47503 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46818 * 300.00015 * 1 2 3 27 27 H 0.97001 * 119.99727 * 359.97438 * 8 6 2 28 28 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 29 29 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 30 30 H 0.97000 * 120.00390 * 335.00529 * 12 10 9 31 31 H 0.97001 * 120.00086 * 179.97438 * 16 15 13 32 32 H 1.09006 * 115.54473 * 34.40981 * 21 10 9 33 33 H 1.08997 * 117.49676 * 359.97438 * 22 21 10 34 34 H 1.08999 * 117.49788 * 145.01561 * 22 21 10 35 35 H 1.09001 * 117.49820 * 214.97543 * 23 21 10 36 36 H 1.08996 * 117.50016 * 0.02562 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6940 1.2018 5 7 2.3993 -1.2295 2.1293 6 6 2.0323 -0.7103 -1.2306 7 8 2.7295 -1.6964 -1.1193 8 7 1.7067 -0.2498 -2.4546 9 6 2.1900 -0.9439 -3.6508 10 6 1.6754 -0.2259 -4.9000 11 1 2.1103 0.7724 -4.9504 12 7 0.2156 -0.1199 -4.8359 13 6 -0.4291 0.8775 -5.5176 14 1 0.1386 1.5858 -6.1028 15 6 -1.8121 0.9782 -5.4565 16 7 -2.4318 1.9366 -6.1121 17 14 -2.7939 -0.2465 -4.4437 18 1 -2.9438 0.2650 -3.0576 19 1 -4.1363 -0.4285 -5.0521 20 1 -2.0821 -1.5494 -4.4163 21 6 2.0749 -1.0196 -6.1455 22 6 3.1192 -0.3977 -7.0747 23 6 1.6517 -0.4605 -7.5054 24 1 -0.3634 0.5140 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.1488 0.5387 -2.5436 28 1 3.2800 -0.9444 -3.6551 29 1 1.8262 -1.9714 -3.6466 30 1 -0.2943 -0.7562 -4.3105 31 1 -3.3983 2.0067 -6.0697 32 1 2.0870 -2.1033 -6.0285 33 1 3.5214 0.5771 -6.7988 34 1 3.8181 -1.0722 -7.5693 35 1 1.3857 -1.1764 -8.2831 36 1 1.0890 0.4730 -7.5127 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265350465.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:30:11 Heat of formation + Delta-G solvation = 23.776499 kcal Electronic energy + Delta-G solvation = -18335.852817 eV Core-core repulsion = 15435.322013 eV Total energy + Delta-G solvation = -2900.530805 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.01941 -37.82009 -36.60202 -34.89977 -33.78220 -33.17552 -31.20515 -28.51259 -25.46282 -23.73180 -22.41955 -21.75842 -20.71662 -19.85499 -18.38664 -17.53731 -17.07044 -15.76927 -15.44614 -15.18677 -14.58343 -14.29533 -14.13620 -13.75751 -13.35401 -13.16082 -12.88196 -12.77829 -12.54182 -12.36133 -11.95288 -11.66545 -11.54248 -11.44897 -11.01124 -10.94478 -10.80402 -10.33949 -9.94433 -9.78745 -9.57780 -9.45091 -9.09383 -8.95027 -7.44261 -5.89262 -3.26257 2.44823 2.48998 2.73344 3.25169 3.31515 3.34321 3.38150 3.73276 4.34416 4.46938 4.65272 4.69508 4.84635 5.02322 5.25443 5.34764 5.41904 5.50291 5.51090 5.60019 5.68005 5.83348 5.89766 5.91377 6.08350 6.11440 6.36581 6.51166 6.61889 6.67281 6.93793 7.39749 7.59327 7.84696 8.19013 8.28410 9.05783 9.78108 9.97182 11.28269 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.017116 B = 0.007307 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.496047 B = 3830.909341 C = 5135.060317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.013 4.013 3 H 0.142 0.858 4 C 0.228 3.772 5 N -0.422 5.422 6 C 0.519 3.481 7 O -0.540 6.540 8 N -0.708 5.708 9 C 0.115 3.885 10 C 0.198 3.802 11 H 0.066 0.934 12 N -0.742 5.742 13 C -0.243 4.243 14 H 0.092 0.908 15 C 0.010 3.990 16 N -0.930 5.930 17 Si 0.878 3.122 18 H -0.283 1.283 19 H -0.292 1.292 20 H -0.277 1.277 21 C -0.165 4.165 22 C -0.193 4.193 23 C -0.154 4.154 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.413 0.587 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.362 0.638 31 H 0.260 0.740 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.853 -1.412 5.575 8.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.038 4.038 3 H 0.159 0.841 4 C -0.091 4.091 5 N -0.097 5.097 6 C 0.302 3.698 7 O -0.417 6.417 8 N -0.360 5.360 9 C -0.009 4.009 10 C 0.088 3.912 11 H 0.084 0.916 12 N -0.385 5.385 13 C -0.373 4.373 14 H 0.110 0.890 15 C -0.186 4.186 16 N -0.577 5.577 17 Si 0.708 3.292 18 H -0.209 1.209 19 H -0.219 1.219 20 H -0.203 1.203 21 C -0.187 4.187 22 C -0.231 4.231 23 C -0.191 4.191 24 H 0.109 0.891 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.250 0.750 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.195 0.805 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.845 -2.704 6.905 10.795 hybrid contribution -1.308 -0.398 0.046 1.368 sum 6.537 -3.102 6.951 10.034 Atomic orbital electron populations 1.21852 0.89411 1.04429 1.04931 1.18879 0.98950 1.00257 0.85683 0.84101 1.28152 0.93449 0.93660 0.93867 1.81153 1.08124 1.08110 1.12288 1.19926 0.80764 0.84727 0.84349 1.90760 1.38082 1.26174 1.86735 1.45909 1.52972 1.32344 1.04800 1.21716 0.99044 0.96455 0.83683 1.20032 0.85454 0.96480 0.89186 0.91610 1.42850 1.00825 1.35325 1.59473 1.18997 0.90111 1.04692 1.23486 0.88982 1.24643 0.96256 0.97872 0.99864 1.69684 1.08527 1.33735 1.45722 0.86664 0.80306 0.81724 0.80468 1.20921 1.21885 1.20335 1.22951 1.03064 0.98947 0.93701 1.22957 0.92725 1.01992 1.05438 1.22850 0.95630 1.04085 0.96547 0.89148 0.91100 0.90300 0.74972 0.90907 0.91564 0.80475 0.92966 0.89145 0.89354 0.90049 0.90213 0.87075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.04 37.16 0.34 -0.95 16 2 C -0.01 -0.13 3.10 -94.56 -0.29 -0.42 16 3 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 4 C 0.23 2.96 13.88 -20.76 -0.29 2.67 16 5 N -0.42 -6.57 18.54 42.15 0.78 -5.79 16 6 C 0.52 6.83 7.14 -10.98 -0.08 6.75 16 7 O -0.54 -9.33 16.03 5.55 0.09 -9.24 16 8 N -0.71 -9.00 5.28 -60.30 -0.32 -9.32 16 9 C 0.12 1.61 5.22 -4.04 -0.02 1.59 16 10 C 0.20 3.14 2.70 -67.93 -0.18 2.96 16 11 H 0.07 1.06 7.84 -51.93 -0.41 0.66 16 12 N -0.74 -14.43 4.34 -53.42 -0.23 -14.66 16 13 C -0.24 -5.81 9.11 -15.06 -0.14 -5.95 16 14 H 0.09 2.39 7.14 -52.49 -0.37 2.02 16 15 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 16 N -0.93 -26.63 13.97 55.49 0.78 -25.85 16 17 Si 0.88 19.87 27.74 -169.99 -4.71 15.15 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.04 6.52 56.52 0.37 -5.67 16 21 C -0.16 -2.56 5.36 -90.62 -0.49 -3.05 16 22 C -0.19 -2.69 10.18 -26.70 -0.27 -2.96 16 23 C -0.15 -2.56 9.78 -26.70 -0.26 -2.82 16 24 H 0.09 0.78 7.56 -51.92 -0.39 0.39 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.41 4.92 7.56 -40.82 -0.31 4.61 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.36 7.16 5.66 -40.82 -0.23 6.92 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.09 1.36 8.11 -51.93 -0.42 0.93 16 33 H 0.09 1.19 8.05 -51.93 -0.42 0.77 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.11 2.17 6.23 -51.93 -0.32 1.84 16 LS Contribution 311.09 15.07 4.69 4.69 Total: -1.00 -30.93 311.09 -5.72 -36.65 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -5.00 Total: 10.38 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -1.78 Total: -2.01 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 1.01 Total: -55.61 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.71 Total: 15.15 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.93 -5.72 -36.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265350465.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.427 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds