Wall clock time and date at job start Thu Apr 9 2020 12:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.47201 * 109.47361 * 120.00280 * 2 1 3 5 5 N 2.60794 * 109.47079 * 120.00271 * 2 1 3 6 6 C 1.50703 * 109.46771 * 240.00448 * 2 1 3 7 7 O 1.21283 * 119.99488 * 239.99768 * 6 2 1 8 8 N 1.34777 * 120.00290 * 60.00208 * 6 2 1 9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 2 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 H 1.09002 * 109.47682 * 64.99618 * 10 9 8 12 12 N 1.46506 * 109.47012 * 304.99483 * 10 9 8 13 13 C 1.36937 * 119.99934 * 154.99714 * 12 10 9 14 14 H 1.07998 * 120.00035 * 0.02562 * 13 12 10 15 15 C 1.38810 * 120.00229 * 180.02562 * 13 12 10 16 16 N 1.31614 * 120.00215 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99755 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 89.99844 * 17 15 13 19 19 H 1.48504 * 109.47093 * 210.00291 * 17 15 13 20 20 H 1.48497 * 109.47085 * 329.99855 * 17 15 13 21 21 C 1.53003 * 109.47530 * 184.99929 * 10 9 8 22 22 C 1.52996 * 117.49852 * 248.74727 * 21 10 9 23 23 C 1.52995 * 117.50233 * 180.08435 * 21 10 9 24 24 H 1.09008 * 109.47076 * 59.99403 * 1 2 3 25 25 H 1.08992 * 109.47503 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46818 * 300.00015 * 1 2 3 27 27 H 0.97001 * 119.99727 * 359.97438 * 8 6 2 28 28 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 29 29 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 30 30 H 0.97000 * 120.00390 * 335.00529 * 12 10 9 31 31 H 0.97001 * 120.00086 * 179.97438 * 16 15 13 32 32 H 1.09006 * 115.54473 * 34.40981 * 21 10 9 33 33 H 1.08997 * 117.49676 * 359.97438 * 22 21 10 34 34 H 1.08999 * 117.49788 * 145.01561 * 22 21 10 35 35 H 1.09001 * 117.49820 * 214.97543 * 23 21 10 36 36 H 1.08996 * 117.50016 * 0.02562 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6940 1.2018 5 7 2.3993 -1.2295 2.1293 6 6 2.0323 -0.7103 -1.2306 7 8 2.7295 -1.6964 -1.1193 8 7 1.7067 -0.2498 -2.4546 9 6 2.1900 -0.9439 -3.6508 10 6 1.6754 -0.2259 -4.9000 11 1 2.1103 0.7724 -4.9504 12 7 0.2156 -0.1199 -4.8359 13 6 -0.4291 0.8775 -5.5176 14 1 0.1386 1.5858 -6.1028 15 6 -1.8121 0.9782 -5.4565 16 7 -2.4318 1.9366 -6.1121 17 14 -2.7939 -0.2465 -4.4437 18 1 -2.9438 0.2650 -3.0576 19 1 -4.1363 -0.4285 -5.0521 20 1 -2.0821 -1.5494 -4.4163 21 6 2.0749 -1.0196 -6.1455 22 6 3.1192 -0.3977 -7.0747 23 6 1.6517 -0.4605 -7.5054 24 1 -0.3634 0.5140 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.1488 0.5387 -2.5436 28 1 3.2800 -0.9444 -3.6551 29 1 1.8262 -1.9714 -3.6466 30 1 -0.2943 -0.7562 -4.3105 31 1 -3.3983 2.0067 -6.0697 32 1 2.0870 -2.1033 -6.0285 33 1 3.5214 0.5771 -6.7988 34 1 3.8181 -1.0722 -7.5693 35 1 1.3857 -1.1764 -8.2831 36 1 1.0890 0.4730 -7.5127 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265350465.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:30:09 Heat of formation + Delta-G solvation = 2.409757 kcal Electronic energy + Delta-G solvation = -18336.779349 eV Core-core repulsion = 15435.322013 eV Total energy + Delta-G solvation = -2901.457336 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.10111 -39.13293 -37.67972 -36.14369 -35.23254 -34.28497 -32.88660 -29.92435 -26.32541 -25.23574 -23.87202 -22.99980 -21.84883 -21.18374 -19.80130 -18.86220 -18.12223 -16.95680 -16.76780 -16.34309 -16.00176 -15.54221 -15.52143 -14.92321 -14.59207 -14.56672 -14.12924 -14.06450 -13.72508 -13.26954 -13.08202 -12.93665 -12.80780 -12.64813 -12.40443 -12.30052 -12.22487 -12.02688 -11.58784 -11.08158 -10.94634 -10.85275 -10.73836 -10.06558 -9.24379 -7.88679 -5.21584 1.43198 1.46311 1.49748 1.51250 1.56599 1.71531 2.34247 2.59135 2.81262 3.04619 3.46469 3.68614 3.75002 3.89727 3.94355 4.16999 4.20291 4.39643 4.40936 4.57059 4.69335 4.79439 4.83401 4.88545 4.95042 5.15326 5.22052 5.25730 5.44246 5.47322 5.55392 5.93572 6.32781 6.39986 6.57477 7.16329 7.20180 7.93669 8.13124 9.32282 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.017116 B = 0.007307 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.496047 B = 3830.909341 C = 5135.060317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.003 4.003 3 H 0.187 0.813 4 C 0.246 3.754 5 N -0.473 5.473 6 C 0.522 3.478 7 O -0.584 6.584 8 N -0.702 5.702 9 C 0.124 3.876 10 C 0.200 3.800 11 H 0.065 0.935 12 N -0.740 5.740 13 C -0.204 4.204 14 H 0.065 0.935 15 C -0.057 4.057 16 N -0.984 5.984 17 Si 0.937 3.063 18 H -0.263 1.263 19 H -0.315 1.315 20 H -0.262 1.262 21 C -0.170 4.170 22 C -0.163 4.163 23 C -0.178 4.178 24 H 0.096 0.904 25 H 0.058 0.942 26 H 0.101 0.899 27 H 0.419 0.581 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.364 0.636 31 H 0.253 0.747 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.882 -1.871 6.564 10.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.027 4.027 3 H 0.204 0.796 4 C -0.072 4.072 5 N -0.149 5.149 6 C 0.307 3.693 7 O -0.464 6.464 8 N -0.354 5.354 9 C 0.000 4.000 10 C 0.092 3.908 11 H 0.083 0.917 12 N -0.383 5.383 13 C -0.335 4.335 14 H 0.083 0.917 15 C -0.248 4.248 16 N -0.635 5.635 17 Si 0.767 3.233 18 H -0.188 1.188 19 H -0.243 1.243 20 H -0.188 1.188 21 C -0.191 4.191 22 C -0.201 4.201 23 C -0.215 4.215 24 H 0.114 0.886 25 H 0.077 0.923 26 H 0.119 0.881 27 H 0.257 0.743 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.198 0.802 31 H 0.062 0.938 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.923 -3.177 7.919 12.346 hybrid contribution -1.508 -0.234 -0.356 1.567 sum 7.415 -3.411 7.563 11.127 Atomic orbital electron populations 1.21904 0.88160 1.04124 1.06347 1.19084 0.99637 1.01497 0.82465 0.79598 1.28711 0.92122 0.92559 0.93791 1.81170 1.09860 1.09706 1.14140 1.20380 0.79784 0.84068 0.85072 1.90754 1.40136 1.28183 1.87318 1.45842 1.52749 1.32287 1.04506 1.21554 0.99655 0.95809 0.83006 1.20145 0.83150 0.96943 0.90570 0.91655 1.42800 1.02420 1.34233 1.58824 1.18894 0.89716 1.03925 1.20965 0.91727 1.25279 0.97554 0.99953 1.02048 1.69860 1.08230 1.36569 1.48871 0.85684 0.77696 0.80253 0.79704 1.18840 1.24270 1.18751 1.22944 1.04001 0.99503 0.92696 1.23023 0.91387 1.02533 1.03133 1.22719 0.98052 1.02893 0.97869 0.88557 0.92318 0.88069 0.74255 0.89638 0.92131 0.80215 0.93813 0.88079 0.88679 0.87604 0.89751 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.04 71.98 0.65 -1.40 16 2 C 0.00 -0.05 3.10 -13.34 -0.04 -0.09 16 3 H 0.19 1.39 8.14 -2.39 -0.02 1.37 16 4 C 0.25 5.91 13.88 89.44 1.24 7.15 16 5 N -0.47 -14.27 18.54 20.00 0.37 -13.90 16 6 C 0.52 12.33 7.14 87.66 0.63 12.95 16 7 O -0.58 -19.11 16.03 -3.04 -0.05 -19.16 16 8 N -0.70 -15.78 5.28 -463.07 -2.45 -18.23 16 9 C 0.12 3.13 5.22 86.38 0.45 3.58 16 10 C 0.20 5.92 2.70 44.99 0.12 6.04 16 11 H 0.07 1.98 7.84 -2.39 -0.02 1.96 16 12 N -0.74 -27.51 4.34 -322.93 -1.40 -28.91 16 13 C -0.20 -9.71 9.11 84.03 0.77 -8.94 16 14 H 0.06 3.43 7.14 -2.91 -0.02 3.41 16 15 C -0.06 -2.97 5.50 84.86 0.47 -2.51 16 16 N -0.98 -57.84 13.97 21.65 0.30 -57.54 16 17 Si 0.94 40.55 27.74 68.60 1.90 42.45 16 18 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 19 H -0.31 -14.75 7.11 99.48 0.71 -14.04 16 20 H -0.26 -10.52 6.52 99.48 0.65 -9.87 16 21 C -0.17 -4.90 5.36 -10.80 -0.06 -4.96 16 22 C -0.16 -4.10 10.18 30.62 0.31 -3.79 16 23 C -0.18 -5.77 9.78 30.62 0.30 -5.47 16 24 H 0.10 1.29 7.56 -2.38 -0.02 1.27 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.42 8.62 7.56 -92.71 -0.70 7.92 16 28 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.36 13.47 5.66 -92.71 -0.52 12.94 16 31 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 32 H 0.10 2.74 8.11 -2.38 -0.02 2.72 16 33 H 0.09 2.28 8.05 -2.39 -0.02 2.26 16 34 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.08 3.01 6.23 -2.39 -0.01 3.00 16 Total: -1.00 -68.82 311.09 3.33 -65.49 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: -0.18 Total: 27.24 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 4.83 Total: 2.57 kcal Atomic # 7 Polarization: -115.41 SS G_CDS: -3.17 Total: -118.58 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.05 Total: -19.16 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 1.90 Total: 42.45 kcal Total: -68.82 3.33 -65.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265350465.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.895 kcal (2) G-P(sol) polarization free energy of solvation -68.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds