Wall clock time and date at job start Thu Apr 9 2020 13:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08990 * 109.64121 * 2 1 4 4 C 1.53029 * 109.81536 * 239.46619 * 2 1 3 5 5 C 1.50071 * 110.14838 * 289.64885 * 4 2 1 6 6 C 1.29441 * 124.07337 * 342.87214 * 5 4 2 7 7 C 1.50065 * 124.07827 * 0.46574 * 6 5 4 8 8 C 1.53018 * 110.14804 * 342.87156 * 7 6 5 9 9 H 1.09007 * 109.81530 * 289.64652 * 8 7 6 10 10 C 1.50696 * 109.64162 * 169.12135 * 8 7 6 11 11 O 1.21284 * 120.00109 * 241.05461 * 10 8 7 12 12 N 1.34777 * 120.00137 * 61.05677 * 10 8 7 13 13 C 1.46506 * 119.99873 * 180.02562 * 12 10 8 14 14 C 1.50699 * 109.46928 * 179.97438 * 13 12 10 15 15 O 1.21297 * 119.99980 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00037 * 179.97438 * 14 13 12 17 17 C 1.37097 * 119.99944 * 179.97438 * 16 14 13 18 18 H 1.07996 * 120.00463 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99682 * 180.02562 * 17 16 14 20 20 N 1.31418 * 119.99941 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 120.00327 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.46729 * 90.00195 * 21 19 17 23 23 H 1.48490 * 109.47136 * 209.99926 * 21 19 17 24 24 H 1.48496 * 109.46819 * 330.00313 * 21 19 17 25 25 H 1.08994 * 109.46692 * 299.58274 * 1 2 3 26 26 H 1.08996 * 109.46991 * 59.58271 * 1 2 3 27 27 H 1.09002 * 109.47122 * 179.57902 * 1 2 3 28 28 H 1.08998 * 109.35919 * 49.85988 * 4 2 1 29 29 H 1.08997 * 109.35435 * 169.44144 * 4 2 1 30 30 H 1.07995 * 117.96140 * 162.84529 * 5 4 2 31 31 H 1.08002 * 117.95962 * 180.48903 * 6 5 4 32 32 H 1.08997 * 109.35640 * 222.65859 * 7 6 5 33 33 H 1.08995 * 109.35672 * 103.08085 * 7 6 5 34 34 H 0.96999 * 120.00047 * 359.97438 * 12 10 8 35 35 H 1.09004 * 109.47073 * 299.99562 * 13 12 10 36 36 H 1.09000 * 109.47212 * 59.99645 * 13 12 10 37 37 H 0.96996 * 119.99844 * 0.02562 * 16 14 13 38 38 H 0.97002 * 120.00138 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8964 1.0265 0.0000 4 6 2.0488 -0.7314 -1.2400 5 6 1.7784 -2.2029 -1.1231 6 6 1.4897 -2.8012 -0.0122 7 6 1.3753 -2.1054 1.3125 8 6 2.0456 -0.7315 1.2458 9 1 3.1271 -0.8508 1.1794 10 6 1.6984 0.0619 2.4791 11 8 1.0975 1.1103 2.3764 12 7 2.0558 -0.3936 3.6962 13 6 1.7177 0.3775 4.8951 14 6 2.2255 -0.3446 6.1165 15 8 2.8117 -1.3998 5.9972 16 7 2.0283 0.1820 7.3413 17 6 2.4899 -0.4752 8.4525 18 1 3.0118 -1.4147 8.3464 19 6 2.2861 0.0675 9.7152 20 7 2.7289 -0.5622 10.7804 21 14 1.3827 1.6923 9.8990 22 1 -0.0725 1.4355 10.0469 23 1 1.8844 2.4043 11.1016 24 1 1.6179 2.5283 8.6946 25 1 -0.3632 0.5073 0.8937 26 1 -0.3633 0.5203 -0.8862 27 1 -0.3633 -1.0277 -0.0076 28 1 1.5476 -0.3412 -2.1258 29 1 3.1224 -0.5677 -1.3333 30 1 1.8272 -2.7997 -2.0219 31 1 1.3210 -3.8676 -0.0403 32 1 1.8612 -2.7077 2.0800 33 1 0.3225 -1.9819 1.5659 34 1 2.5361 -1.2323 3.7783 35 1 2.1809 1.3625 4.8362 36 1 0.6355 0.4883 4.9627 37 1 1.5593 1.0257 7.4367 38 1 2.5870 -0.1831 11.6619 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343522965.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:08:07 Heat of formation + Delta-G solvation = -70.116049 kcal Electronic energy + Delta-G solvation = -20030.163914 eV Core-core repulsion = 16872.305342 eV Total energy + Delta-G solvation = -3157.858572 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.49746 -38.72486 -37.73127 -34.57496 -33.80315 -32.11355 -31.83727 -31.30804 -28.15508 -26.94417 -24.56384 -23.72690 -21.64889 -20.07245 -19.61440 -18.66333 -17.46034 -17.25760 -16.29374 -15.58984 -15.42301 -15.27007 -14.79284 -14.41262 -14.23945 -13.99671 -13.65647 -13.34873 -13.15851 -12.68652 -12.60079 -12.41150 -12.19122 -12.00443 -11.90095 -11.42313 -11.24991 -10.94923 -10.74044 -10.65846 -10.36339 -10.08037 -9.71543 -9.54385 -9.16504 -8.86910 -8.78970 -8.32183 -6.42420 -3.95094 2.12168 2.75840 2.98206 3.02840 3.10918 3.29860 3.54509 4.02028 4.41685 4.49537 4.55162 4.73064 5.02833 5.09337 5.11967 5.12591 5.18868 5.31614 5.45337 5.55588 5.64878 5.68990 5.72487 5.77726 5.79933 5.82437 5.96570 6.04922 6.15277 6.36677 6.49993 6.59820 6.77007 7.42420 7.74367 7.98713 8.36597 8.45278 8.79994 9.28110 9.61650 10.69739 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.042133 B = 0.003703 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.398061 B = 7560.139423 C = 8011.767464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.070 4.070 3 H 0.080 0.920 4 C -0.088 4.088 5 C -0.155 4.155 6 C -0.150 4.150 7 C -0.085 4.085 8 C -0.102 4.102 9 H 0.099 0.901 10 C 0.517 3.483 11 O -0.546 6.546 12 N -0.708 5.708 13 C 0.106 3.894 14 C 0.437 3.563 15 O -0.579 6.579 16 N -0.576 5.576 17 C -0.311 4.311 18 H 0.122 0.878 19 C 0.045 3.955 20 N -0.874 5.874 21 Si 0.879 3.121 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.267 1.267 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.412 0.588 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.374 0.626 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.509 0.786 -20.715 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.089 4.089 3 H 0.099 0.901 4 C -0.125 4.125 5 C -0.174 4.174 6 C -0.168 4.168 7 C -0.122 4.122 8 C -0.123 4.123 9 H 0.117 0.883 10 C 0.303 3.697 11 O -0.424 6.424 12 N -0.362 5.362 13 C -0.022 4.022 14 C 0.223 3.777 15 O -0.463 6.463 16 N -0.214 5.214 17 C -0.439 4.439 18 H 0.139 0.861 19 C -0.159 4.159 20 N -0.513 5.513 21 Si 0.705 3.295 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.192 1.192 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.250 0.750 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.207 0.793 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.514 0.808 -20.576 20.889 hybrid contribution -0.394 0.786 0.491 1.006 sum -3.908 1.593 -20.085 20.524 Atomic orbital electron populations 1.21957 0.94569 1.01742 1.02609 1.20943 0.96806 0.99075 0.92055 0.90118 1.20555 1.01094 0.92686 0.98169 1.22031 1.01186 0.96379 0.97754 1.21971 1.01139 0.99564 0.94136 1.20460 1.01734 0.93667 0.96375 1.21401 1.02144 0.95657 0.93099 0.88337 1.20545 0.78860 0.85918 0.84388 1.90651 1.41144 1.23810 1.86765 1.45763 1.58835 1.26681 1.04889 1.20971 1.01190 0.95418 0.84651 1.19659 0.86101 0.87802 0.84092 1.90539 1.46307 1.23966 1.85519 1.42129 1.51455 1.21797 1.06000 1.19443 1.34788 1.07308 0.82370 0.86080 1.25068 0.97428 0.98314 0.95075 1.69620 1.44492 1.38813 0.98384 0.86669 0.80661 0.83326 0.78830 1.19380 1.19963 1.19241 0.90955 0.93154 0.92712 0.90794 0.90840 0.88040 0.87652 0.90131 0.89987 0.75019 0.89793 0.89795 0.79251 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.31 37.16 0.31 -1.36 16 2 C -0.07 -0.74 2.34 -90.40 -0.21 -0.95 16 3 H 0.08 0.92 7.91 -51.93 -0.41 0.51 16 4 C -0.09 -0.74 5.56 -28.17 -0.16 -0.90 16 5 C -0.16 -1.32 9.41 -35.90 -0.34 -1.66 16 6 C -0.15 -1.36 9.15 -35.90 -0.33 -1.69 16 7 C -0.09 -0.87 4.66 -28.18 -0.13 -1.00 16 8 C -0.10 -1.14 2.38 -91.56 -0.22 -1.36 16 9 H 0.10 1.01 8.13 -51.92 -0.42 0.59 16 10 C 0.52 7.52 6.86 -10.99 -0.08 7.44 16 11 O -0.55 -9.34 14.16 5.55 0.08 -9.26 16 12 N -0.71 -11.00 5.44 -61.47 -0.33 -11.33 16 13 C 0.11 1.81 6.15 -5.19 -0.03 1.77 16 14 C 0.44 9.53 7.85 -10.99 -0.09 9.45 16 15 O -0.58 -14.48 15.24 5.54 0.08 -14.39 16 16 N -0.58 -13.33 5.09 -10.96 -0.06 -13.38 16 17 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 18 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 19 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 20 N -0.87 -24.89 13.96 55.50 0.77 -24.12 16 21 Si 0.88 18.93 27.74 -169.99 -4.71 14.22 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 25 H 0.07 0.96 6.19 -51.93 -0.32 0.64 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.57 5.73 -51.93 -0.30 0.27 16 28 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.10 0.73 8.06 -52.49 -0.42 0.30 16 31 H 0.11 0.84 8.06 -52.49 -0.42 0.41 16 32 H 0.08 0.81 7.95 -51.93 -0.41 0.40 16 33 H 0.08 0.89 6.89 -51.93 -0.36 0.53 16 34 H 0.41 6.35 7.18 -40.82 -0.29 6.05 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 38 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 308.92 15.07 4.66 4.66 Total: -1.00 -31.21 308.92 -6.29 -37.51 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -5.26 Total: 13.92 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -1.52 Total: 2.19 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.38 Total: -48.83 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: 0.16 Total: -23.65 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.71 Total: 14.22 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.21 -6.29 -37.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343522965.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.609 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds