Wall clock time and date at job start Thu Apr 9 2020 13:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08990 * 109.64121 * 2 1 4 4 C 1.53029 * 109.81536 * 239.46619 * 2 1 3 5 5 C 1.50071 * 110.14838 * 289.64885 * 4 2 1 6 6 C 1.29441 * 124.07337 * 342.87214 * 5 4 2 7 7 C 1.50065 * 124.07827 * 0.46574 * 6 5 4 8 8 C 1.53018 * 110.14804 * 342.87156 * 7 6 5 9 9 H 1.09007 * 109.81530 * 289.64652 * 8 7 6 10 10 C 1.50696 * 109.64162 * 169.12135 * 8 7 6 11 11 O 1.21284 * 120.00109 * 241.05461 * 10 8 7 12 12 N 1.34777 * 120.00137 * 61.05677 * 10 8 7 13 13 C 1.46506 * 119.99873 * 180.02562 * 12 10 8 14 14 C 1.50699 * 109.46928 * 179.97438 * 13 12 10 15 15 O 1.21297 * 119.99980 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00037 * 179.97438 * 14 13 12 17 17 C 1.37097 * 119.99944 * 179.97438 * 16 14 13 18 18 H 1.07996 * 120.00463 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99682 * 180.02562 * 17 16 14 20 20 N 1.31418 * 119.99941 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 120.00327 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.46729 * 90.00195 * 21 19 17 23 23 H 1.48490 * 109.47136 * 209.99926 * 21 19 17 24 24 H 1.48496 * 109.46819 * 330.00313 * 21 19 17 25 25 H 1.08994 * 109.46692 * 299.58274 * 1 2 3 26 26 H 1.08996 * 109.46991 * 59.58271 * 1 2 3 27 27 H 1.09002 * 109.47122 * 179.57902 * 1 2 3 28 28 H 1.08998 * 109.35919 * 49.85988 * 4 2 1 29 29 H 1.08997 * 109.35435 * 169.44144 * 4 2 1 30 30 H 1.07995 * 117.96140 * 162.84529 * 5 4 2 31 31 H 1.08002 * 117.95962 * 180.48903 * 6 5 4 32 32 H 1.08997 * 109.35640 * 222.65859 * 7 6 5 33 33 H 1.08995 * 109.35672 * 103.08085 * 7 6 5 34 34 H 0.96999 * 120.00047 * 359.97438 * 12 10 8 35 35 H 1.09004 * 109.47073 * 299.99562 * 13 12 10 36 36 H 1.09000 * 109.47212 * 59.99645 * 13 12 10 37 37 H 0.96996 * 119.99844 * 0.02562 * 16 14 13 38 38 H 0.97002 * 120.00138 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8964 1.0265 0.0000 4 6 2.0488 -0.7314 -1.2400 5 6 1.7784 -2.2029 -1.1231 6 6 1.4897 -2.8012 -0.0122 7 6 1.3753 -2.1054 1.3125 8 6 2.0456 -0.7315 1.2458 9 1 3.1271 -0.8508 1.1794 10 6 1.6984 0.0619 2.4791 11 8 1.0975 1.1103 2.3764 12 7 2.0558 -0.3936 3.6962 13 6 1.7177 0.3775 4.8951 14 6 2.2255 -0.3446 6.1165 15 8 2.8117 -1.3998 5.9972 16 7 2.0283 0.1820 7.3413 17 6 2.4899 -0.4752 8.4525 18 1 3.0118 -1.4147 8.3464 19 6 2.2861 0.0675 9.7152 20 7 2.7289 -0.5622 10.7804 21 14 1.3827 1.6923 9.8990 22 1 -0.0725 1.4355 10.0469 23 1 1.8844 2.4043 11.1016 24 1 1.6179 2.5283 8.6946 25 1 -0.3632 0.5073 0.8937 26 1 -0.3633 0.5203 -0.8862 27 1 -0.3633 -1.0277 -0.0076 28 1 1.5476 -0.3412 -2.1258 29 1 3.1224 -0.5677 -1.3333 30 1 1.8272 -2.7997 -2.0219 31 1 1.3210 -3.8676 -0.0403 32 1 1.8612 -2.7077 2.0800 33 1 0.3225 -1.9819 1.5659 34 1 2.5361 -1.2323 3.7783 35 1 2.1809 1.3625 4.8362 36 1 0.6355 0.4883 4.9627 37 1 1.5593 1.0257 7.4367 38 1 2.5870 -0.1831 11.6619 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343522965.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:08:06 Heat of formation + Delta-G solvation = -92.334004 kcal Electronic energy + Delta-G solvation = -20031.127357 eV Core-core repulsion = 16872.305342 eV Total energy + Delta-G solvation = -3158.822015 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -41.57959 -40.36878 -38.85104 -36.30559 -35.36603 -33.84877 -32.89040 -32.20205 -29.49343 -27.98837 -26.26152 -24.69690 -22.57281 -21.48090 -21.16915 -20.47303 -18.63285 -18.16295 -17.52922 -16.94650 -16.92109 -16.69744 -16.31000 -15.64809 -15.28086 -15.09937 -14.96301 -14.64350 -14.29492 -14.10780 -14.01249 -13.85198 -13.33931 -13.21222 -12.96056 -12.70556 -12.45884 -12.24188 -12.01429 -11.82353 -11.59229 -11.55797 -11.16764 -10.69374 -10.62828 -10.34354 -10.14144 -9.83160 -8.46652 -6.08752 1.30104 1.33033 1.42994 1.46043 1.60061 1.78862 2.04120 2.19568 2.87480 3.09571 3.54922 3.69902 3.84753 3.99216 4.19169 4.30005 4.33255 4.40190 4.42013 4.45423 4.54886 4.64770 4.79654 4.91603 4.97156 5.10754 5.15950 5.25187 5.28181 5.33642 5.47458 5.53989 5.82536 5.87137 6.10207 6.46932 6.51920 6.77176 7.16994 7.29124 7.76970 8.69829 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.042133 B = 0.003703 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.398061 B = 7560.139423 C = 8011.767464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.070 4.070 3 H 0.070 0.930 4 C -0.086 4.086 5 C -0.150 4.150 6 C -0.162 4.162 7 C -0.083 4.083 8 C -0.097 4.097 9 H 0.111 0.889 10 C 0.518 3.482 11 O -0.570 6.570 12 N -0.711 5.711 13 C 0.117 3.883 14 C 0.444 3.556 15 O -0.614 6.614 16 N -0.578 5.578 17 C -0.332 4.332 18 H 0.063 0.937 19 C -0.007 4.007 20 N -0.926 5.926 21 Si 0.959 3.041 22 H -0.256 1.256 23 H -0.273 1.273 24 H -0.233 1.233 25 H 0.046 0.954 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.412 0.588 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.392 0.608 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.456 2.391 -22.867 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 H 0.089 0.911 4 C -0.122 4.122 5 C -0.168 4.168 6 C -0.180 4.180 7 C -0.120 4.120 8 C -0.118 4.118 9 H 0.129 0.871 10 C 0.306 3.694 11 O -0.449 6.449 12 N -0.365 5.365 13 C -0.011 4.011 14 C 0.232 3.768 15 O -0.500 6.500 16 N -0.218 5.218 17 C -0.461 4.461 18 H 0.082 0.918 19 C -0.208 4.208 20 N -0.566 5.566 21 Si 0.779 3.221 22 H -0.181 1.181 23 H -0.198 1.198 24 H -0.157 1.157 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.250 0.750 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.228 0.772 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.461 2.410 -22.762 23.320 hybrid contribution -0.051 0.187 1.093 1.110 sum -4.512 2.597 -21.669 22.286 Atomic orbital electron populations 1.21903 0.94992 1.01754 1.01846 1.20957 0.96439 0.98790 0.92722 0.91112 1.20569 1.01850 0.92454 0.97367 1.22219 0.99959 0.96472 0.98179 1.21989 1.02345 1.00151 0.93546 1.20420 1.01005 0.93120 0.97456 1.21450 1.02999 0.95744 0.91644 0.87092 1.21110 0.77878 0.85695 0.84680 1.90643 1.42191 1.25016 1.87061 1.45838 1.59163 1.26671 1.04864 1.20875 1.02115 0.95377 0.82704 1.20535 0.84161 0.87107 0.85001 1.90528 1.47383 1.25746 1.86323 1.41937 1.52137 1.22450 1.05274 1.19036 1.36016 1.06416 0.84649 0.91843 1.26065 0.97885 1.02954 0.93846 1.69782 1.46144 1.41354 0.99274 0.85443 0.79173 0.77453 0.80041 1.18077 1.19792 1.15665 0.93539 0.92010 0.92315 0.89393 0.89752 0.86218 0.86573 0.90293 0.90923 0.74965 0.87994 0.87959 0.77250 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.31 71.98 0.60 -2.44 16 2 C -0.07 -1.35 2.34 -10.65 -0.02 -1.38 16 3 H 0.07 1.51 7.91 -2.39 -0.02 1.49 16 4 C -0.09 -1.20 5.56 29.66 0.16 -1.03 16 5 C -0.15 -2.11 9.41 27.04 0.25 -1.85 16 6 C -0.16 -2.59 9.15 27.04 0.25 -2.34 16 7 C -0.08 -1.59 4.66 29.66 0.14 -1.46 16 8 C -0.10 -2.04 2.38 -11.40 -0.03 -2.07 16 9 H 0.11 2.07 8.13 -2.38 -0.02 2.05 16 10 C 0.52 14.46 6.86 87.66 0.60 15.06 16 11 O -0.57 -18.79 14.16 -3.04 -0.04 -18.83 16 12 N -0.71 -21.35 5.44 -466.77 -2.54 -23.89 16 13 C 0.12 3.80 6.15 85.63 0.53 4.33 16 14 C 0.44 19.27 7.85 87.66 0.69 19.96 16 15 O -0.61 -31.44 15.24 -3.08 -0.05 -31.49 16 16 N -0.58 -26.51 5.09 -306.98 -1.56 -28.07 16 17 C -0.33 -18.84 10.16 84.04 0.85 -17.98 16 18 H 0.06 4.25 7.39 -2.91 -0.02 4.23 16 19 C -0.01 -0.40 5.50 84.92 0.47 0.06 16 20 N -0.93 -54.33 13.96 21.66 0.30 -54.03 16 21 Si 0.96 38.02 27.74 68.60 1.90 39.92 16 22 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 23 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 24 H -0.23 -7.90 6.52 99.48 0.65 -7.26 16 25 H 0.05 1.20 6.19 -2.39 -0.01 1.18 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 1.14 5.73 -2.39 -0.01 1.13 16 28 H 0.09 1.02 8.12 -2.39 -0.02 1.01 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.12 1.29 8.06 -2.91 -0.02 1.26 16 31 H 0.12 1.60 8.06 -2.91 -0.02 1.57 16 32 H 0.08 1.52 7.95 -2.39 -0.02 1.50 16 33 H 0.07 1.52 6.89 -2.39 -0.02 1.50 16 34 H 0.41 12.52 7.18 -92.71 -0.67 11.86 16 35 H 0.10 3.02 8.14 -2.38 -0.02 3.00 16 36 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 37 H 0.39 15.08 5.76 -92.71 -0.53 14.55 16 38 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -70.37 308.92 2.32 -68.05 By element: Atomic # 1 Polarization: 39.65 SS G_CDS: -0.18 Total: 39.48 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 4.49 Total: 8.87 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -3.80 Total: -106.00 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -0.09 Total: -50.32 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 1.90 Total: 39.92 kcal Total: -70.37 2.32 -68.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343522965.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.288 kcal (2) G-P(sol) polarization free energy of solvation -70.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds