Wall clock time and date at job start Thu Apr 9 2020 13:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.89076 * 2 1 4 4 C 1.54378 * 109.83090 * 239.06198 * 2 1 3 5 5 C 1.55306 * 102.25129 * 219.12963 * 4 2 1 6 6 C 1.54943 * 100.94118 * 34.13319 * 5 4 2 7 7 H 1.09000 * 110.30870 * 82.57059 * 6 5 4 8 8 C 1.53001 * 110.31187 * 204.64169 * 6 5 4 9 9 C 1.53003 * 109.47390 * 185.00310 * 8 6 5 10 10 C 1.50695 * 109.47009 * 179.97438 * 9 8 6 11 11 O 1.21290 * 120.00476 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99856 * 180.02562 * 10 9 8 13 13 C 1.37100 * 119.99874 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00135 * 342.85621 * 13 12 10 15 15 C 1.38956 * 119.99679 * 162.86027 * 13 12 10 16 16 N 1.31410 * 119.99889 * 336.99694 * 15 13 12 17 17 Si 1.86799 * 119.99707 * 156.99774 * 15 13 12 18 18 H 1.48495 * 109.47248 * 265.78987 * 17 15 13 19 19 H 1.48499 * 109.47194 * 25.79645 * 17 15 13 20 20 H 1.48506 * 109.46935 * 145.79172 * 17 15 13 21 21 C 1.46498 * 119.99809 * 359.97438 * 12 10 9 22 22 C 1.47199 * 109.47404 * 276.13133 * 21 12 10 23 23 N 6.59651 * 94.11560 * 99.08945 * 2 1 3 24 24 O 1.43233 * 109.82810 * 120.92456 * 2 1 3 25 25 H 1.09001 * 109.47079 * 180.93510 * 1 2 3 26 26 H 1.08998 * 109.47735 * 300.93904 * 1 2 3 27 27 H 1.09005 * 109.47099 * 60.93978 * 1 2 3 28 28 H 1.08999 * 110.84724 * 100.94060 * 4 2 1 29 29 H 1.08997 * 111.02268 * 337.39857 * 4 2 1 30 30 H 1.09005 * 111.12630 * 276.21935 * 5 4 2 31 31 H 1.08989 * 111.16562 * 152.06885 * 5 4 2 32 32 H 1.08994 * 109.47370 * 64.99768 * 8 6 5 33 33 H 1.09000 * 109.46995 * 304.99923 * 8 6 5 34 34 H 1.09001 * 109.47202 * 59.99805 * 9 8 6 35 35 H 1.09000 * 109.46736 * 299.99772 * 9 8 6 36 36 H 0.97001 * 119.99934 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.47107 * 36.13839 * 21 12 10 38 38 H 1.09007 * 109.46820 * 156.13688 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 6 2.0537 -0.7466 -1.2456 5 6 3.2730 -1.5222 -0.6765 6 6 2.7747 -1.8443 0.7548 7 1 2.1415 -2.7315 0.7442 8 6 3.9625 -2.0519 1.6965 9 6 3.4531 -2.4903 3.0711 10 6 4.6231 -2.6954 3.9984 11 8 5.7532 -2.5097 3.5992 12 7 4.4137 -3.0861 5.2712 13 6 5.4782 -3.2732 6.1147 14 1 6.4741 -3.3820 5.7114 15 6 5.2756 -3.3230 7.4885 16 7 4.2104 -2.7629 8.0163 17 14 6.5174 -4.1861 8.5850 18 1 6.0871 -5.5893 8.8111 19 1 7.8490 -4.1763 7.9279 20 1 6.6032 -3.4787 9.8879 21 6 3.0487 -3.3109 5.7532 22 6 2.4594 -2.0292 6.1737 23 7 2.0034 -1.0394 6.4969 24 8 2.0159 -0.6924 1.1559 25 1 -0.3633 -1.0275 0.0168 26 1 -0.3634 0.5283 0.8814 27 1 -0.3633 0.4992 -0.8983 28 1 2.3672 -0.0427 -2.0165 29 1 1.3028 -1.4349 -1.6334 30 1 4.1621 -0.8920 -0.6504 31 1 3.4580 -2.4349 -1.2428 32 1 4.5157 -1.1180 1.7950 33 1 4.6184 -2.8216 1.2898 34 1 2.8999 -3.4243 2.9726 35 1 2.7972 -1.7206 3.4778 36 1 4.0691 -2.7973 8.9753 37 1 2.4472 -3.7424 4.9531 38 1 3.0710 -3.9960 6.6009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346783070.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:08:18 Heat of formation + Delta-G solvation = -59.179096 kcal Electronic energy + Delta-G solvation = -20327.512731 eV Core-core repulsion = 17170.128421 eV Total energy + Delta-G solvation = -3157.384310 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -39.68456 -38.70367 -35.76270 -34.35659 -33.48311 -32.24669 -31.81695 -30.35939 -27.44282 -26.57785 -24.62999 -22.68194 -21.50389 -20.42670 -18.87873 -17.83697 -16.95633 -16.48113 -16.26852 -15.61993 -14.59647 -14.48317 -14.25639 -14.15013 -13.59678 -13.35244 -12.93161 -12.88113 -12.79500 -12.36483 -12.07951 -11.83399 -11.73555 -11.56534 -11.45385 -11.18703 -11.13457 -10.93398 -10.83212 -10.67992 -10.54102 -10.40046 -10.33474 -10.18876 -9.40336 -9.20786 -8.50536 -7.98983 -6.45989 -3.93549 3.12969 3.25109 3.29855 3.62436 3.81630 3.87732 4.05340 4.16683 4.44785 4.64912 4.69058 4.90635 4.96738 5.13459 5.18114 5.25900 5.29719 5.41435 5.48266 5.54230 5.60350 5.68200 5.77774 5.83112 5.87767 5.99581 6.07868 6.10054 6.15939 6.28536 6.52281 6.57898 6.66002 7.20811 7.52163 7.97031 8.34243 8.81287 9.06413 9.26389 9.81776 10.60477 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.031854 B = 0.004585 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.803999 B = 6105.302248 C = 6788.555289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.074 3.926 3 H 0.076 0.924 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.080 3.920 7 H 0.069 0.931 8 C -0.096 4.096 9 C -0.133 4.133 10 C 0.456 3.544 11 O -0.577 6.577 12 N -0.446 5.446 13 C -0.315 4.315 14 H 0.108 0.892 15 C 0.031 3.969 16 N -0.876 5.876 17 Si 0.925 3.075 18 H -0.276 1.276 19 H -0.269 1.269 20 H -0.286 1.286 21 C 0.222 3.778 22 C 0.245 3.755 23 N -0.472 5.472 24 O -0.370 6.370 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.272 0.728 37 H 0.084 0.916 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.937 -1.874 -14.701 16.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.016 3.984 3 H 0.094 0.906 4 C -0.189 4.189 5 C -0.190 4.190 6 C 0.022 3.978 7 H 0.087 0.913 8 C -0.134 4.134 9 C -0.173 4.173 10 C 0.246 3.754 11 O -0.460 6.460 12 N -0.167 5.167 13 C -0.442 4.442 14 H 0.126 0.874 15 C -0.172 4.172 16 N -0.515 5.515 17 Si 0.752 3.248 18 H -0.202 1.202 19 H -0.193 1.193 20 H -0.212 1.212 21 C 0.094 3.906 22 C -0.073 4.073 23 N -0.152 5.152 24 O -0.290 6.290 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.140 -0.240 -14.006 15.723 hybrid contribution 0.625 -0.704 0.559 1.095 sum -6.515 -0.944 -13.447 14.972 Atomic orbital electron populations 1.22139 0.95233 1.02467 1.02067 1.22676 0.94107 0.96420 0.85195 0.90630 1.23178 0.98030 0.99705 0.98005 1.23304 0.98462 1.01079 0.96119 1.23092 0.92608 0.88966 0.93096 0.91326 1.21418 0.95453 1.03060 0.93432 1.21577 0.98013 1.02244 0.95508 1.20238 0.90235 0.81340 0.83632 1.90524 1.24636 1.54641 1.76163 1.43681 1.04543 1.59112 1.09331 1.19732 0.89597 1.48009 0.86842 0.87413 1.25260 0.98021 0.96699 0.97268 1.69911 1.29193 1.39261 1.13108 0.85923 0.80758 0.79205 0.78942 1.20239 1.19329 1.21175 1.18720 0.83094 0.88404 1.00343 1.29352 0.91652 0.95010 0.91328 1.80921 1.11656 1.11631 1.10988 1.88523 1.70551 1.40410 1.29495 0.92260 0.91908 0.91905 0.90402 0.90608 0.90134 0.90010 0.90717 0.90136 0.90328 0.89753 0.91728 0.89805 0.85657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.44 37.16 0.35 -1.24 16 2 C 0.07 0.84 4.16 -26.01 -0.11 0.73 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.15 -1.38 6.54 -24.79 -0.16 -1.54 16 5 C -0.15 -1.58 6.57 -24.48 -0.16 -1.74 16 6 C 0.08 1.04 3.40 -25.71 -0.09 0.95 16 7 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 8 C -0.10 -1.53 4.23 -26.73 -0.11 -1.64 16 9 C -0.13 -2.37 4.24 -27.88 -0.12 -2.49 16 10 C 0.46 10.53 7.56 -10.99 -0.08 10.45 16 11 O -0.58 -15.22 15.63 5.55 0.09 -15.14 16 12 N -0.45 -10.63 2.60 -117.93 -0.31 -10.94 16 13 C -0.31 -8.26 9.32 -14.93 -0.14 -8.40 16 14 H 0.11 2.99 7.39 -52.49 -0.39 2.60 16 15 C 0.03 0.78 4.83 -17.47 -0.08 0.70 16 16 N -0.88 -22.57 9.58 55.50 0.53 -22.04 16 17 Si 0.93 19.87 29.61 -169.99 -5.03 14.83 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 21 C 0.22 4.51 4.91 -6.83 -0.03 4.48 16 22 C 0.24 5.60 12.98 -20.74 -0.27 5.33 16 23 N -0.47 -11.64 18.54 42.18 0.78 -10.86 16 24 O -0.37 -5.54 10.47 -35.23 -0.37 -5.91 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.61 7.86 -51.93 -0.41 0.20 16 30 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 31 H 0.08 0.71 8.14 -51.94 -0.42 0.29 16 32 H 0.07 1.35 8.10 -51.93 -0.42 0.92 16 33 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 34 H 0.08 1.16 7.42 -51.93 -0.39 0.77 16 35 H 0.08 1.60 7.34 -51.93 -0.38 1.22 16 36 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 37 H 0.08 1.31 6.70 -51.93 -0.35 0.96 16 38 H 0.13 2.59 6.44 -51.93 -0.33 2.25 16 LS Contribution 318.63 15.07 4.80 4.80 Total: -1.00 -31.77 318.63 -6.11 -37.88 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.60 Total: 1.77 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -1.01 Total: 5.60 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 1.01 Total: -43.84 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.28 Total: -21.04 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.83 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.77 -6.11 -37.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346783070.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.299 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds