Wall clock time and date at job start Thu Apr 9 2020 13:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.89076 * 2 1 4 4 C 1.54378 * 109.83090 * 239.06198 * 2 1 3 5 5 C 1.55306 * 102.25129 * 219.12963 * 4 2 1 6 6 C 1.54943 * 100.94118 * 34.13319 * 5 4 2 7 7 H 1.09000 * 110.30870 * 82.57059 * 6 5 4 8 8 C 1.53001 * 110.31187 * 204.64169 * 6 5 4 9 9 C 1.53003 * 109.47390 * 185.00310 * 8 6 5 10 10 C 1.50695 * 109.47009 * 179.97438 * 9 8 6 11 11 O 1.21290 * 120.00476 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99856 * 180.02562 * 10 9 8 13 13 C 1.37100 * 119.99874 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00135 * 342.85621 * 13 12 10 15 15 C 1.38956 * 119.99679 * 162.86027 * 13 12 10 16 16 N 1.31410 * 119.99889 * 336.99694 * 15 13 12 17 17 Si 1.86799 * 119.99707 * 156.99774 * 15 13 12 18 18 H 1.48495 * 109.47248 * 265.78987 * 17 15 13 19 19 H 1.48499 * 109.47194 * 25.79645 * 17 15 13 20 20 H 1.48506 * 109.46935 * 145.79172 * 17 15 13 21 21 C 1.46498 * 119.99809 * 359.97438 * 12 10 9 22 22 C 1.47199 * 109.47404 * 276.13133 * 21 12 10 23 23 N 6.59651 * 94.11560 * 99.08945 * 2 1 3 24 24 O 1.43233 * 109.82810 * 120.92456 * 2 1 3 25 25 H 1.09001 * 109.47079 * 180.93510 * 1 2 3 26 26 H 1.08998 * 109.47735 * 300.93904 * 1 2 3 27 27 H 1.09005 * 109.47099 * 60.93978 * 1 2 3 28 28 H 1.08999 * 110.84724 * 100.94060 * 4 2 1 29 29 H 1.08997 * 111.02268 * 337.39857 * 4 2 1 30 30 H 1.09005 * 111.12630 * 276.21935 * 5 4 2 31 31 H 1.08989 * 111.16562 * 152.06885 * 5 4 2 32 32 H 1.08994 * 109.47370 * 64.99768 * 8 6 5 33 33 H 1.09000 * 109.46995 * 304.99923 * 8 6 5 34 34 H 1.09001 * 109.47202 * 59.99805 * 9 8 6 35 35 H 1.09000 * 109.46736 * 299.99772 * 9 8 6 36 36 H 0.97001 * 119.99934 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.47107 * 36.13839 * 21 12 10 38 38 H 1.09007 * 109.46820 * 156.13688 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 6 2.0537 -0.7466 -1.2456 5 6 3.2730 -1.5222 -0.6765 6 6 2.7747 -1.8443 0.7548 7 1 2.1415 -2.7315 0.7442 8 6 3.9625 -2.0519 1.6965 9 6 3.4531 -2.4903 3.0711 10 6 4.6231 -2.6954 3.9984 11 8 5.7532 -2.5097 3.5992 12 7 4.4137 -3.0861 5.2712 13 6 5.4782 -3.2732 6.1147 14 1 6.4741 -3.3820 5.7114 15 6 5.2756 -3.3230 7.4885 16 7 4.2104 -2.7629 8.0163 17 14 6.5174 -4.1861 8.5850 18 1 6.0871 -5.5893 8.8111 19 1 7.8490 -4.1763 7.9279 20 1 6.6032 -3.4787 9.8879 21 6 3.0487 -3.3109 5.7532 22 6 2.4594 -2.0292 6.1737 23 7 2.0034 -1.0394 6.4969 24 8 2.0159 -0.6924 1.1559 25 1 -0.3633 -1.0275 0.0168 26 1 -0.3634 0.5283 0.8814 27 1 -0.3633 0.4992 -0.8983 28 1 2.3672 -0.0427 -2.0165 29 1 1.3028 -1.4349 -1.6334 30 1 4.1621 -0.8920 -0.6504 31 1 3.4580 -2.4349 -1.2428 32 1 4.5157 -1.1180 1.7950 33 1 4.6184 -2.8216 1.2898 34 1 2.8999 -3.4243 2.9726 35 1 2.7972 -1.7206 3.4778 36 1 4.0691 -2.7973 8.9753 37 1 2.4472 -3.7424 4.9531 38 1 3.0710 -3.9960 6.6009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346783070.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:08:16 Heat of formation + Delta-G solvation = -78.911050 kcal Electronic energy + Delta-G solvation = -20328.368373 eV Core-core repulsion = 17170.128421 eV Total energy + Delta-G solvation = -3158.239952 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -40.84957 -40.28395 -37.61393 -36.20934 -34.77625 -33.70222 -33.14318 -31.44249 -29.18771 -27.89223 -26.20525 -23.89525 -22.37551 -21.46184 -20.55678 -19.72603 -18.23943 -17.94822 -17.83859 -16.86344 -16.29947 -15.95045 -15.91210 -15.23920 -14.72743 -14.61997 -14.47105 -14.30941 -14.11346 -13.79103 -13.42203 -13.26609 -13.20076 -12.95829 -12.86363 -12.57823 -12.55868 -12.30399 -12.20481 -12.10605 -11.88730 -11.65812 -11.63893 -11.54866 -11.10280 -10.38687 -10.37547 -9.91540 -8.40082 -5.94612 1.40231 1.48463 1.59506 1.82555 2.08068 2.25560 2.36739 2.90838 2.99612 3.12818 3.60418 3.64529 3.81280 3.93692 4.01430 4.19881 4.21697 4.39857 4.43619 4.50230 4.56432 4.69316 4.78283 4.83721 4.87439 4.90080 4.94907 5.04035 5.12097 5.19214 5.29124 5.37226 5.41936 5.49828 6.05411 6.27594 6.41730 7.00259 7.13716 7.37723 7.95387 8.64213 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.031854 B = 0.004585 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.803999 B = 6105.302248 C = 6788.555289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.061 3.939 3 H 0.069 0.931 4 C -0.141 4.141 5 C -0.150 4.150 6 C 0.080 3.920 7 H 0.089 0.911 8 C -0.091 4.091 9 C -0.121 4.121 10 C 0.447 3.553 11 O -0.619 6.619 12 N -0.458 5.458 13 C -0.344 4.344 14 H 0.082 0.918 15 C 0.005 3.995 16 N -0.893 5.893 17 Si 0.987 3.013 18 H -0.257 1.257 19 H -0.277 1.277 20 H -0.288 1.288 21 C 0.222 3.778 22 C 0.257 3.743 23 N -0.510 5.510 24 O -0.404 6.404 25 H 0.062 0.938 26 H 0.046 0.954 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.074 0.926 36 H 0.274 0.726 37 H 0.139 0.861 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.182 -3.268 -15.997 18.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.003 3.997 3 H 0.087 0.913 4 C -0.178 4.178 5 C -0.188 4.188 6 C 0.023 3.977 7 H 0.107 0.893 8 C -0.129 4.129 9 C -0.161 4.161 10 C 0.238 3.762 11 O -0.505 6.505 12 N -0.178 5.178 13 C -0.472 4.472 14 H 0.099 0.901 15 C -0.197 4.197 16 N -0.532 5.532 17 Si 0.812 3.188 18 H -0.182 1.182 19 H -0.202 1.202 20 H -0.214 1.214 21 C 0.096 3.904 22 C -0.061 4.061 23 N -0.190 5.190 24 O -0.325 6.325 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.138 0.862 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.157 0.843 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.418 -1.640 -15.307 17.545 hybrid contribution 1.042 -0.213 0.971 1.440 sum -7.376 -1.853 -14.336 16.228 Atomic orbital electron populations 1.22110 0.94052 1.02751 1.02515 1.22919 0.95112 0.96220 0.85413 0.91278 1.23158 0.97596 0.99893 0.97143 1.23306 0.98579 1.02149 0.94734 1.23123 0.91622 0.89388 0.93575 0.89304 1.21377 0.96727 1.01489 0.93336 1.21559 0.95766 1.03876 0.94915 1.21197 0.91152 0.79891 0.83963 1.90489 1.26840 1.56168 1.77017 1.43876 1.05376 1.59109 1.09423 1.19641 0.89671 1.49975 0.87884 0.90056 1.25911 0.99670 0.96412 0.97756 1.69992 1.30367 1.39406 1.13398 0.85007 0.78236 0.78943 0.76648 1.18190 1.20178 1.21397 1.19083 0.81984 0.87177 1.02188 1.29879 0.90773 0.95153 0.90280 1.80920 1.13003 1.12754 1.12368 1.88485 1.70962 1.41267 1.31774 0.91927 0.93451 0.89562 0.88717 0.88819 0.91220 0.87752 0.93927 0.89699 0.86224 0.90752 0.91584 0.84317 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.44 71.98 0.68 -2.10 16 2 C 0.06 1.29 4.16 31.06 0.13 1.42 16 3 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.14 -2.14 6.54 31.85 0.21 -1.93 16 5 C -0.15 -2.77 6.57 32.05 0.21 -2.56 16 6 C 0.08 1.94 3.40 31.26 0.11 2.05 16 7 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 8 C -0.09 -2.86 4.23 30.60 0.13 -2.74 16 9 C -0.12 -4.18 4.24 29.85 0.13 -4.05 16 10 C 0.45 20.73 7.56 87.65 0.66 21.39 16 11 O -0.62 -33.65 15.63 -3.06 -0.05 -33.70 16 12 N -0.46 -21.78 2.60 -645.41 -1.68 -23.46 16 13 C -0.34 -18.33 9.32 84.04 0.78 -17.54 16 14 H 0.08 4.68 7.39 -2.91 -0.02 4.66 16 15 C 0.00 0.23 4.83 84.93 0.41 0.64 16 16 N -0.89 -45.68 9.58 21.66 0.21 -45.48 16 17 Si 0.99 40.57 29.61 68.60 2.03 42.60 16 18 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 19 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.29 -11.89 7.11 99.48 0.71 -11.18 16 21 C 0.22 8.71 4.91 84.57 0.42 9.12 16 22 C 0.26 11.58 12.98 89.43 1.16 12.74 16 23 N -0.51 -25.13 18.54 20.01 0.37 -24.76 16 24 O -0.40 -11.73 10.47 -148.98 -1.56 -13.29 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 1.12 7.86 -2.39 -0.02 1.11 16 30 H 0.07 1.43 8.06 -2.38 -0.02 1.41 16 31 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 33 H 0.08 2.55 8.10 -2.39 -0.02 2.53 16 34 H 0.12 3.11 7.42 -2.39 -0.02 3.10 16 35 H 0.07 2.76 7.34 -2.39 -0.02 2.75 16 36 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 37 H 0.14 3.85 6.70 -2.39 -0.02 3.84 16 38 H 0.12 4.95 6.44 -2.38 -0.02 4.94 16 Total: -1.00 -70.74 318.63 5.39 -65.35 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 1.05 Total: 16.32 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 5.02 Total: 16.43 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -1.10 Total: -93.70 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -1.61 Total: -47.00 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -70.74 5.39 -65.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346783070.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.566 kcal (2) G-P(sol) polarization free energy of solvation -70.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds