Wall clock time and date at job start Thu Apr 9 2020 13:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.32671 * 2 1 4 4 C 1.54476 * 110.37479 * 122.25305 * 2 1 3 5 5 C 1.54513 * 104.06252 * 142.81055 * 4 2 1 6 6 C 1.54476 * 104.06363 * 0.02562 * 5 4 2 7 7 H 1.09001 * 110.37146 * 94.96050 * 6 5 4 8 8 C 1.52995 * 110.37229 * 217.19066 * 6 5 4 9 9 C 1.53000 * 109.46994 * 185.00065 * 8 6 5 10 10 C 1.50705 * 109.47010 * 180.02562 * 9 8 6 11 11 O 1.21292 * 119.99945 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99876 * 180.02562 * 10 9 8 13 13 C 1.37097 * 119.99670 * 180.02562 * 12 10 9 14 14 H 1.07996 * 120.00177 * 30.13509 * 13 12 10 15 15 C 1.38957 * 119.99394 * 210.14368 * 13 12 10 16 16 N 1.31406 * 120.00243 * 40.44610 * 15 13 12 17 17 Si 1.86804 * 119.99572 * 220.44909 * 15 13 12 18 18 H 1.48493 * 109.46871 * 269.99941 * 17 15 13 19 19 H 1.48500 * 109.47073 * 29.99910 * 17 15 13 20 20 H 1.48497 * 109.46913 * 149.99844 * 17 15 13 21 21 C 1.46501 * 120.00116 * 359.97438 * 12 10 9 22 22 C 1.47201 * 109.47135 * 266.01635 * 21 12 10 23 23 N 7.02009 * 94.82680 * 259.13464 * 2 1 3 24 24 O 1.44426 * 104.80421 * 336.02118 * 6 5 4 25 25 H 1.09000 * 109.46866 * 297.74061 * 1 2 3 26 26 H 1.09001 * 109.47707 * 57.74578 * 1 2 3 27 27 H 1.09004 * 109.46794 * 177.75085 * 1 2 3 28 28 H 1.09000 * 110.51052 * 24.16584 * 4 2 1 29 29 H 1.09001 * 110.51338 * 261.45934 * 4 2 1 30 30 H 1.09003 * 110.50851 * 241.35714 * 5 4 2 31 31 H 1.09000 * 110.62701 * 118.70392 * 5 4 2 32 32 H 1.09000 * 109.47263 * 65.00340 * 8 6 5 33 33 H 1.08995 * 109.47418 * 304.99678 * 8 6 5 34 34 H 1.08994 * 109.47741 * 60.00096 * 9 8 6 35 35 H 1.09004 * 109.47293 * 299.99476 * 9 8 6 36 36 H 0.97001 * 120.00518 * 5.87856 * 16 15 13 37 37 H 1.09004 * 109.46750 * 26.01189 * 21 12 10 38 38 H 1.08999 * 109.47092 * 146.01044 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0678 -0.7728 1.2247 5 6 3.3178 -1.5049 0.6873 6 6 3.3877 -1.0873 -0.7983 7 1 4.0545 -0.2339 -0.9216 8 6 3.8605 -2.2602 -1.6596 9 6 4.0419 -1.7912 -3.1046 10 6 4.5069 -2.9466 -3.9531 11 8 4.6771 -4.0377 -3.4513 12 7 4.7348 -2.7673 -5.2693 13 6 5.1574 -3.8185 -6.0413 14 1 4.8632 -4.8265 -5.7887 15 6 5.9643 -3.5870 -7.1486 16 7 6.9287 -2.6968 -7.0842 17 14 5.6778 -4.5412 -8.7288 18 1 6.4879 -5.7856 -8.7093 19 1 4.2387 -4.8891 -8.8430 20 1 6.0792 -3.7074 -9.8902 21 6 4.5298 -1.4493 -5.8754 22 6 3.1712 -1.3734 -6.4369 23 7 2.1207 -1.3186 -6.8698 24 8 2.0333 -0.7239 -1.1436 25 1 -0.3633 0.4784 0.9096 26 1 -0.3634 0.5484 -0.8691 27 1 -0.3633 -1.0269 -0.0403 28 1 1.3276 -1.4904 1.5787 29 1 2.3429 -0.0819 2.0216 30 1 3.1956 -2.5845 0.7756 31 1 4.2121 -1.1781 1.2180 32 1 3.1180 -3.0575 -1.6269 33 1 4.8106 -2.6325 -1.2766 34 1 4.7843 -0.9939 -3.1375 35 1 3.0917 -1.4189 -3.4878 36 1 7.1330 -2.2630 -6.2410 37 1 4.6527 -0.6772 -5.1158 38 1 5.2605 -1.2971 -6.6698 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346783071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:08:25 Heat of formation + Delta-G solvation = -61.361155 kcal Electronic energy + Delta-G solvation = -20231.738617 eV Core-core repulsion = 17074.259686 eV Total energy + Delta-G solvation = -3157.478931 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -39.71550 -38.83585 -36.14522 -34.79173 -33.60099 -32.27235 -31.93526 -30.47019 -27.56515 -26.66850 -24.41254 -22.68909 -21.33616 -20.77975 -19.18651 -18.20793 -16.85378 -16.55695 -16.24983 -15.92637 -14.94381 -14.81912 -14.43213 -13.88341 -13.84541 -13.39008 -13.19339 -13.09887 -12.98988 -12.51036 -12.28770 -12.04442 -11.96821 -11.68103 -11.54724 -11.31845 -11.07883 -11.01432 -10.86718 -10.71237 -10.66461 -10.51065 -10.25750 -10.17950 -9.71663 -9.05241 -8.52035 -8.03441 -6.84338 -4.00432 3.14935 3.25350 3.35905 3.37081 3.55299 3.69932 3.79352 4.16852 4.47618 4.52925 4.55677 4.72086 4.81622 4.96126 5.02321 5.11034 5.24494 5.31608 5.37666 5.44210 5.51102 5.63478 5.64652 5.73218 5.76577 5.87677 5.91587 6.00504 6.03546 6.10299 6.16731 6.39765 6.54950 6.94863 7.74039 8.07033 8.13761 8.43321 8.81323 9.22512 9.71406 10.40322 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.030410 B = 0.004496 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.516372 B = 6225.782235 C = 6740.031782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.065 0.935 4 C -0.151 4.151 5 C -0.151 4.151 6 C 0.074 3.926 7 H 0.068 0.932 8 C -0.091 4.091 9 C -0.137 4.137 10 C 0.460 3.540 11 O -0.564 6.564 12 N -0.447 5.447 13 C -0.425 4.425 14 H 0.091 0.909 15 C 0.025 3.975 16 N -0.848 5.848 17 Si 1.052 2.948 18 H -0.282 1.282 19 H -0.282 1.282 20 H -0.278 1.278 21 C 0.183 3.817 22 C 0.210 3.790 23 N -0.452 5.452 24 O -0.365 6.365 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.279 0.721 37 H 0.105 0.895 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.882 8.511 13.159 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.010 3.990 3 H 0.083 0.917 4 C -0.189 4.189 5 C -0.189 4.189 6 C 0.017 3.983 7 H 0.086 0.914 8 C -0.129 4.129 9 C -0.177 4.177 10 C 0.250 3.750 11 O -0.446 6.446 12 N -0.168 5.168 13 C -0.550 4.550 14 H 0.109 0.891 15 C -0.186 4.186 16 N -0.479 5.479 17 Si 0.877 3.123 18 H -0.208 1.208 19 H -0.208 1.208 20 H -0.203 1.203 21 C 0.055 3.945 22 C -0.109 4.109 23 N -0.131 5.131 24 O -0.284 6.284 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.122 0.878 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.939 7.838 11.006 14.760 hybrid contribution 0.040 0.262 1.858 1.877 sum -5.899 8.101 12.865 16.307 Atomic orbital electron populations 1.21799 0.93484 1.02979 1.02133 1.22932 0.95197 0.95363 0.85527 0.91676 1.22995 0.97939 0.99706 0.98218 1.22983 0.98121 1.01826 0.95988 1.23100 0.84467 0.97331 0.93436 0.91401 1.21342 1.02343 0.96122 0.93122 1.21633 1.02243 0.98151 0.95720 1.20396 0.82580 0.90022 0.82026 1.90536 1.55279 1.27088 1.71679 1.43485 1.59088 1.08250 1.05994 1.20115 1.35063 0.89114 1.10750 0.89106 1.26231 0.90835 0.99025 1.02478 1.70797 1.20099 1.26039 1.31002 0.83810 0.76792 0.76360 0.75351 1.20788 1.20812 1.20292 1.19168 0.86214 0.88984 1.00148 1.30235 0.95430 0.92372 0.92840 1.81090 1.12751 1.08896 1.10367 1.89205 1.27209 1.74237 1.37785 0.91442 0.91908 0.91761 0.90711 0.90878 0.90343 0.90628 0.90581 0.89944 0.90071 0.89954 0.91029 0.87767 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.52 37.16 0.35 -1.03 16 2 C 0.07 0.72 3.92 -25.96 -0.10 0.62 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.15 -1.39 6.63 -25.16 -0.17 -1.56 16 5 C -0.15 -1.58 6.63 -25.16 -0.17 -1.75 16 6 C 0.07 0.95 3.25 -25.96 -0.08 0.86 16 7 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 8 C -0.09 -1.43 4.13 -26.73 -0.11 -1.54 16 9 C -0.14 -2.36 4.13 -27.88 -0.12 -2.48 16 10 C 0.46 10.53 7.63 -10.98 -0.08 10.45 16 11 O -0.56 -15.04 15.76 5.55 0.09 -14.95 16 12 N -0.45 -10.52 2.41 -117.93 -0.28 -10.80 16 13 C -0.42 -11.35 8.78 -14.93 -0.13 -11.48 16 14 H 0.09 2.66 7.76 -52.49 -0.41 2.26 16 15 C 0.02 0.63 4.51 -17.47 -0.08 0.55 16 16 N -0.85 -21.62 12.21 55.50 0.68 -20.94 16 17 Si 1.05 23.17 30.06 -169.99 -5.11 18.06 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 21 C 0.18 3.54 5.24 -6.83 -0.04 3.51 16 22 C 0.21 4.32 15.74 -20.71 -0.33 3.99 16 23 N -0.45 -9.89 18.55 42.22 0.78 -9.11 16 24 O -0.36 -5.22 10.82 -35.23 -0.38 -5.60 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.67 7.87 -51.93 -0.41 0.26 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.86 7.87 -51.93 -0.41 0.45 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 33 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 34 H 0.08 1.18 7.41 -51.93 -0.38 0.79 16 35 H 0.08 1.43 7.97 -51.93 -0.41 1.02 16 36 H 0.28 7.02 8.13 -40.82 -0.33 6.69 16 37 H 0.10 1.58 6.30 -51.93 -0.33 1.25 16 38 H 0.13 2.58 5.73 -51.93 -0.30 2.28 16 LS Contribution 323.47 15.07 4.87 4.87 Total: -1.00 -31.28 323.47 -5.97 -37.25 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -5.58 Total: 1.07 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -1.05 Total: 0.14 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 1.18 Total: -40.85 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.29 Total: -20.55 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.11 Total: 18.06 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.28 -5.97 -37.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346783071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.111 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds