Wall clock time and date at job start Thu Apr 9 2020 13:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.27964 * 2 1 4 4 C 1.54947 * 110.30946 * 122.19950 * 2 1 3 5 5 C 1.55306 * 100.94529 * 155.36100 * 4 2 1 6 6 C 1.54374 * 102.25073 * 325.86611 * 5 4 2 7 7 H 1.09004 * 109.83136 * 261.84091 * 6 5 4 8 8 C 1.53004 * 109.83197 * 140.87340 * 6 5 4 9 9 C 1.52996 * 109.47130 * 175.41221 * 8 6 5 10 10 C 1.50701 * 109.46924 * 179.97438 * 9 8 6 11 11 O 1.21296 * 120.00351 * 0.02562 * 10 9 8 12 12 N 1.34783 * 120.00212 * 179.97438 * 10 9 8 13 13 C 1.37092 * 120.00385 * 180.02562 * 12 10 9 14 14 H 1.08011 * 119.99590 * 322.48110 * 13 12 10 15 15 C 1.38950 * 120.00345 * 142.47776 * 13 12 10 16 16 N 1.31408 * 120.00102 * 157.59380 * 15 13 12 17 17 Si 1.86802 * 119.99891 * 337.59361 * 15 13 12 18 18 H 1.48499 * 109.47186 * 95.70163 * 17 15 13 19 19 H 1.48495 * 109.47077 * 215.70527 * 17 15 13 20 20 H 1.48500 * 109.46827 * 335.70760 * 17 15 13 21 21 C 1.46500 * 119.99647 * 0.02562 * 12 10 9 22 22 C 1.47195 * 109.47191 * 83.79516 * 21 12 10 23 23 N 6.43175 * 97.42415 * 270.33812 * 2 1 3 24 24 O 1.43241 * 107.59308 * 21.35667 * 6 5 4 25 25 H 1.09003 * 109.46863 * 180.63073 * 1 2 3 26 26 H 1.09001 * 109.46725 * 60.63699 * 1 2 3 27 27 H 1.08996 * 109.47181 * 300.63651 * 1 2 3 28 28 H 1.09003 * 111.12466 * 273.28114 * 4 2 1 29 29 H 1.08999 * 111.12661 * 37.44011 * 4 2 1 30 30 H 1.08999 * 110.84707 * 207.67164 * 5 4 2 31 31 H 1.08999 * 111.02251 * 84.13281 * 5 4 2 32 32 H 1.09001 * 109.46655 * 295.40842 * 8 6 5 33 33 H 1.08998 * 109.47044 * 55.40958 * 8 6 5 34 34 H 1.09002 * 109.47475 * 299.99696 * 9 8 6 35 35 H 1.08998 * 109.47372 * 59.99938 * 9 8 6 36 36 H 0.96998 * 120.00196 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.47139 * 203.79819 * 21 12 10 38 38 H 1.09007 * 109.46977 * 323.79476 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7743 1.2296 5 6 3.4699 -1.2033 0.7179 6 6 3.2113 -1.4412 -0.7853 7 1 3.0625 -2.5050 -0.9711 8 6 4.3992 -0.9310 -1.6036 9 6 4.1864 -1.2732 -3.0795 10 6 5.3562 -0.7701 -3.8855 11 8 6.2704 -0.1949 -3.3336 12 7 5.3871 -0.9602 -5.2195 13 6 6.4514 -0.5031 -5.9526 14 1 6.9169 0.4382 -5.6996 15 6 6.9315 -1.2505 -7.0211 16 7 7.6193 -0.6655 -7.9758 17 14 6.5990 -3.0870 -7.1003 18 1 5.4013 -3.3374 -7.9418 19 1 7.7729 -3.7775 -7.6922 20 1 6.3584 -3.6060 -5.7299 21 6 4.2831 -1.6555 -5.8860 22 6 3.1982 -0.7003 -6.1638 23 7 2.3610 0.0376 -6.3777 24 8 2.0286 -0.7157 -1.1413 25 1 -0.3633 -1.0276 0.0113 26 1 -0.3633 0.5039 -0.8957 27 1 -0.3633 0.5237 0.8842 28 1 2.1495 -0.1224 2.0994 29 1 1.4470 -1.6430 1.4492 30 1 3.7966 -2.1217 1.2055 31 1 4.2001 -0.4074 0.8646 32 1 4.4815 0.1498 -1.4894 33 1 5.3147 -1.4046 -1.2491 34 1 4.1040 -2.3541 -3.1938 35 1 3.2709 -0.7996 -3.4340 36 1 7.9541 -1.1872 -8.7219 37 1 4.6374 -2.0855 -6.8228 38 1 3.9109 -2.4501 -5.2393 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346783072.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:08:30 Heat of formation + Delta-G solvation = -52.226125 kcal Electronic energy + Delta-G solvation = -20350.194236 eV Core-core repulsion = 17193.111429 eV Total energy + Delta-G solvation = -3157.082807 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.79669 -38.94768 -36.23599 -34.75194 -33.60331 -32.31345 -32.18236 -30.55615 -27.73541 -26.84988 -24.76789 -22.67921 -21.60002 -20.43949 -18.95405 -18.41340 -17.07401 -16.67295 -16.37302 -15.74878 -15.39943 -14.65825 -14.33672 -13.88563 -13.76595 -13.54631 -13.41778 -13.07203 -12.83311 -12.48494 -12.47176 -12.35114 -11.97138 -11.92168 -11.76751 -11.61599 -11.36071 -11.06310 -10.89745 -10.86652 -10.74618 -10.55270 -10.44156 -10.01272 -9.45348 -9.23359 -8.64874 -8.01998 -6.48160 -4.08687 2.91729 3.08058 3.12366 3.16295 3.29907 3.60258 3.72595 4.04444 4.32991 4.40007 4.52184 4.61267 4.75770 4.97194 5.05272 5.08188 5.22075 5.27807 5.40816 5.42749 5.47217 5.54600 5.58957 5.67106 5.72796 5.73413 5.85754 5.93325 6.00399 6.05431 6.08077 6.41750 6.53490 7.11684 7.40586 8.02529 8.17035 8.36066 8.84144 9.17415 9.59508 10.63699 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.027531 B = 0.004932 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.777057 B = 5676.009746 C = 6111.195164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.073 3.927 3 H 0.068 0.932 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.079 3.921 7 H 0.079 0.921 8 C -0.108 4.108 9 C -0.139 4.139 10 C 0.476 3.524 11 O -0.550 6.550 12 N -0.466 5.466 13 C -0.323 4.323 14 H 0.108 0.892 15 C 0.062 3.938 16 N -0.856 5.856 17 Si 0.861 3.139 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.256 1.256 21 C 0.180 3.820 22 C 0.206 3.794 23 N -0.441 5.441 24 O -0.372 6.372 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.276 0.724 37 H 0.113 0.887 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.872 -6.269 14.747 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.016 3.984 3 H 0.086 0.914 4 C -0.189 4.189 5 C -0.189 4.189 6 C 0.022 3.978 7 H 0.097 0.903 8 C -0.146 4.146 9 C -0.180 4.180 10 C 0.266 3.734 11 O -0.429 6.429 12 N -0.190 5.190 13 C -0.450 4.450 14 H 0.126 0.874 15 C -0.145 4.145 16 N -0.491 5.491 17 Si 0.687 3.313 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.180 1.180 21 C 0.053 3.947 22 C -0.113 4.113 23 N -0.120 5.120 24 O -0.292 6.292 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.131 0.869 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.581 -4.872 14.330 19.057 hybrid contribution 0.371 -1.245 -0.145 1.307 sum -11.210 -6.117 14.185 19.086 Atomic orbital electron populations 1.21877 0.94014 1.02592 1.02278 1.22934 0.94622 0.95780 0.85074 0.91380 1.23307 0.96472 1.00723 0.98421 1.23168 0.97563 1.02812 0.95376 1.22834 0.85642 0.96005 0.93341 0.90309 1.21677 0.96748 1.02689 0.93512 1.21665 0.98551 1.01898 0.95873 1.20445 0.88129 0.82942 0.81927 1.90570 1.39140 1.43627 1.69608 1.43669 1.16225 1.53967 1.05114 1.19058 1.08537 1.06587 1.10849 0.87439 1.25378 0.95860 0.98295 0.94971 1.69757 1.34954 1.36332 1.08052 0.87182 0.78326 0.86354 0.79474 1.19702 1.20651 1.17968 1.19548 0.83256 0.90757 1.01121 1.30045 0.93647 0.94804 0.92846 1.81062 1.12322 1.09327 1.09268 1.88478 1.42155 1.64746 1.33813 0.92071 0.91839 0.91533 0.90225 0.90489 0.90122 0.90127 0.90887 0.90202 0.89865 0.89586 0.91348 0.86926 0.87363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.62 37.15 0.36 -1.02 16 2 C 0.07 0.80 4.08 -25.71 -0.10 0.69 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 4 C -0.15 -1.31 6.57 -24.48 -0.16 -1.47 16 5 C -0.15 -1.47 6.55 -24.79 -0.16 -1.63 16 6 C 0.08 0.97 3.52 -26.01 -0.09 0.88 16 7 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 8 C -0.11 -1.62 4.07 -26.73 -0.11 -1.73 16 9 C -0.14 -2.32 4.22 -27.88 -0.12 -2.44 16 10 C 0.48 10.54 7.56 -10.98 -0.08 10.46 16 11 O -0.55 -14.18 15.85 5.54 0.09 -14.09 16 12 N -0.47 -10.71 2.15 -117.93 -0.25 -10.96 16 13 C -0.32 -8.78 9.36 -14.94 -0.14 -8.92 16 14 H 0.11 3.33 7.91 -52.48 -0.42 2.92 16 15 C 0.06 1.62 5.26 -17.47 -0.09 1.53 16 16 N -0.86 -23.87 13.96 55.50 0.77 -23.10 16 17 Si 0.86 18.39 25.05 -169.99 -4.26 14.14 16 18 H -0.27 -5.25 6.69 56.52 0.38 -4.87 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 21 C 0.18 3.37 4.27 -6.83 -0.03 3.34 16 22 C 0.21 4.06 15.00 -20.75 -0.31 3.74 16 23 N -0.44 -9.30 18.54 42.16 0.78 -8.52 16 24 O -0.37 -5.15 10.32 -35.23 -0.36 -5.51 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.80 7.85 -51.93 -0.41 0.39 16 32 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 34 H 0.08 1.15 7.42 -51.93 -0.39 0.76 16 35 H 0.09 1.46 7.22 -51.93 -0.38 1.08 16 36 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.11 2.15 3.61 -51.93 -0.19 1.96 16 38 H 0.11 1.53 6.70 -51.93 -0.35 1.18 16 LS Contribution 317.10 15.07 4.78 4.78 Total: -1.00 -31.86 317.10 -4.99 -36.86 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.50 Total: 2.98 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -1.04 Total: 3.43 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 1.30 Total: -42.58 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.28 Total: -19.60 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -4.26 Total: 14.14 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.86 -4.99 -36.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346783072.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.371 kcal (2) G-P(sol) polarization free energy of solvation -31.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds