Wall clock time and date at job start Thu Apr 9 2020 13:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.27964 * 2 1 4 4 C 1.54947 * 110.30946 * 122.19950 * 2 1 3 5 5 C 1.55306 * 100.94529 * 155.36100 * 4 2 1 6 6 C 1.54374 * 102.25073 * 325.86611 * 5 4 2 7 7 H 1.09004 * 109.83136 * 261.84091 * 6 5 4 8 8 C 1.53004 * 109.83197 * 140.87340 * 6 5 4 9 9 C 1.52996 * 109.47130 * 175.41221 * 8 6 5 10 10 C 1.50701 * 109.46924 * 179.97438 * 9 8 6 11 11 O 1.21296 * 120.00351 * 0.02562 * 10 9 8 12 12 N 1.34783 * 120.00212 * 179.97438 * 10 9 8 13 13 C 1.37092 * 120.00385 * 180.02562 * 12 10 9 14 14 H 1.08011 * 119.99590 * 322.48110 * 13 12 10 15 15 C 1.38950 * 120.00345 * 142.47776 * 13 12 10 16 16 N 1.31408 * 120.00102 * 157.59380 * 15 13 12 17 17 Si 1.86802 * 119.99891 * 337.59361 * 15 13 12 18 18 H 1.48499 * 109.47186 * 95.70163 * 17 15 13 19 19 H 1.48495 * 109.47077 * 215.70527 * 17 15 13 20 20 H 1.48500 * 109.46827 * 335.70760 * 17 15 13 21 21 C 1.46500 * 119.99647 * 0.02562 * 12 10 9 22 22 C 1.47195 * 109.47191 * 83.79516 * 21 12 10 23 23 N 6.43175 * 97.42415 * 270.33812 * 2 1 3 24 24 O 1.43241 * 107.59308 * 21.35667 * 6 5 4 25 25 H 1.09003 * 109.46863 * 180.63073 * 1 2 3 26 26 H 1.09001 * 109.46725 * 60.63699 * 1 2 3 27 27 H 1.08996 * 109.47181 * 300.63651 * 1 2 3 28 28 H 1.09003 * 111.12466 * 273.28114 * 4 2 1 29 29 H 1.08999 * 111.12661 * 37.44011 * 4 2 1 30 30 H 1.08999 * 110.84707 * 207.67164 * 5 4 2 31 31 H 1.08999 * 111.02251 * 84.13281 * 5 4 2 32 32 H 1.09001 * 109.46655 * 295.40842 * 8 6 5 33 33 H 1.08998 * 109.47044 * 55.40958 * 8 6 5 34 34 H 1.09002 * 109.47475 * 299.99696 * 9 8 6 35 35 H 1.08998 * 109.47372 * 59.99938 * 9 8 6 36 36 H 0.96998 * 120.00196 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.47139 * 203.79819 * 21 12 10 38 38 H 1.09007 * 109.46977 * 323.79476 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7743 1.2296 5 6 3.4699 -1.2033 0.7179 6 6 3.2113 -1.4412 -0.7853 7 1 3.0625 -2.5050 -0.9711 8 6 4.3992 -0.9310 -1.6036 9 6 4.1864 -1.2732 -3.0795 10 6 5.3562 -0.7701 -3.8855 11 8 6.2704 -0.1949 -3.3336 12 7 5.3871 -0.9602 -5.2195 13 6 6.4514 -0.5031 -5.9526 14 1 6.9169 0.4382 -5.6996 15 6 6.9315 -1.2505 -7.0211 16 7 7.6193 -0.6655 -7.9758 17 14 6.5990 -3.0870 -7.1003 18 1 5.4013 -3.3374 -7.9418 19 1 7.7729 -3.7775 -7.6922 20 1 6.3584 -3.6060 -5.7299 21 6 4.2831 -1.6555 -5.8860 22 6 3.1982 -0.7003 -6.1638 23 7 2.3610 0.0376 -6.3777 24 8 2.0286 -0.7157 -1.1413 25 1 -0.3633 -1.0276 0.0113 26 1 -0.3633 0.5039 -0.8957 27 1 -0.3633 0.5237 0.8842 28 1 2.1495 -0.1224 2.0994 29 1 1.4470 -1.6430 1.4492 30 1 3.7966 -2.1217 1.2055 31 1 4.2001 -0.4074 0.8646 32 1 4.4815 0.1498 -1.4894 33 1 5.3147 -1.4046 -1.2491 34 1 4.1040 -2.3541 -3.1938 35 1 3.2709 -0.7996 -3.4340 36 1 7.9541 -1.1872 -8.7219 37 1 4.6374 -2.0855 -6.8228 38 1 3.9109 -2.4501 -5.2393 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346783072.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:08:26 Heat of formation + Delta-G solvation = -73.857998 kcal Electronic energy + Delta-G solvation = -20351.132265 eV Core-core repulsion = 17193.111429 eV Total energy + Delta-G solvation = -3158.020835 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -41.00614 -40.35658 -37.92185 -36.50622 -34.81066 -34.11334 -33.14300 -31.57656 -29.38955 -28.15608 -26.24964 -23.85695 -22.40230 -21.42731 -20.60641 -20.20957 -18.46642 -17.90190 -17.82570 -17.28191 -16.68617 -16.14584 -15.58168 -15.25523 -15.17015 -14.81612 -14.67603 -14.41383 -14.23046 -14.01939 -13.72882 -13.59075 -13.22908 -13.19945 -13.08515 -12.68106 -12.57028 -12.56076 -12.17581 -11.96537 -11.76724 -11.69600 -11.63988 -11.57456 -11.10117 -10.46905 -10.37313 -9.96153 -8.48651 -6.17897 1.26980 1.40475 1.45930 1.55293 1.72921 1.89931 2.23971 2.72997 2.84284 2.91121 3.19087 3.63505 3.71981 3.88042 3.95516 4.09150 4.14541 4.21441 4.30423 4.35390 4.42675 4.52993 4.67212 4.77065 4.81752 4.84245 4.94712 5.01685 5.09505 5.18078 5.28150 5.33373 5.41486 5.50043 6.04150 6.24043 6.42720 6.50778 6.89701 7.19208 7.75769 8.68420 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.027531 B = 0.004932 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.777057 B = 5676.009746 C = 6111.195164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.060 3.940 3 H 0.055 0.945 4 C -0.141 4.141 5 C -0.151 4.151 6 C 0.081 3.919 7 H 0.101 0.899 8 C -0.106 4.106 9 C -0.128 4.128 10 C 0.469 3.531 11 O -0.600 6.600 12 N -0.476 5.476 13 C -0.346 4.346 14 H 0.039 0.961 15 C 0.011 3.989 16 N -0.910 5.910 17 Si 0.934 3.066 18 H -0.227 1.227 19 H -0.287 1.287 20 H -0.229 1.229 21 C 0.179 3.821 22 C 0.219 3.781 23 N -0.469 5.469 24 O -0.398 6.398 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.128 0.872 35 H 0.086 0.914 36 H 0.282 0.718 37 H 0.117 0.883 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.149 -9.970 16.146 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.003 3.997 3 H 0.073 0.927 4 C -0.178 4.178 5 C -0.188 4.188 6 C 0.023 3.977 7 H 0.119 0.881 8 C -0.144 4.144 9 C -0.167 4.167 10 C 0.260 3.740 11 O -0.482 6.482 12 N -0.199 5.199 13 C -0.474 4.474 14 H 0.057 0.943 15 C -0.192 4.192 16 N -0.546 5.546 17 Si 0.753 3.247 18 H -0.152 1.152 19 H -0.214 1.214 20 H -0.151 1.151 21 C 0.053 3.947 22 C -0.100 4.100 23 N -0.148 5.148 24 O -0.319 6.319 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.146 0.854 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.134 0.866 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -13.902 -8.561 15.732 22.673 hybrid contribution 1.143 0.085 -0.582 1.286 sum -12.758 -8.476 15.150 21.544 Atomic orbital electron populations 1.21863 0.92785 1.03064 1.02599 1.23150 0.95670 0.95352 0.85552 0.92698 1.23285 0.95632 1.01165 0.97741 1.23181 0.98087 1.03654 0.93893 1.22882 0.83947 0.96615 0.94228 0.88107 1.21668 0.98549 1.00954 0.93214 1.21697 0.95260 1.04246 0.95527 1.21527 0.88988 0.81523 0.81940 1.90541 1.41511 1.45525 1.70635 1.43705 1.16430 1.54302 1.05422 1.18586 1.11238 1.05222 1.12309 0.94270 1.26315 0.95079 1.04339 0.93419 1.69893 1.36667 1.38945 1.09081 0.86051 0.79631 0.77428 0.81565 1.15153 1.21351 1.15120 1.19946 0.81387 0.91070 1.02308 1.30233 0.93349 0.94377 0.91992 1.81081 1.13647 1.09833 1.10280 1.88447 1.42575 1.65175 1.35659 0.91494 0.93308 0.89430 0.88637 0.88996 0.87866 0.91113 0.93930 0.90201 0.85400 0.89530 0.90833 0.86601 0.81326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.62 71.98 0.69 -1.71 16 2 C 0.06 1.21 4.08 31.26 0.13 1.33 16 3 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 4 C -0.14 -2.01 6.57 32.05 0.21 -1.80 16 5 C -0.15 -2.52 6.55 31.85 0.21 -2.31 16 6 C 0.08 1.76 3.52 31.06 0.11 1.86 16 7 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 8 C -0.11 -3.05 4.07 30.59 0.12 -2.93 16 9 C -0.13 -3.95 4.22 29.85 0.13 -3.82 16 10 C 0.47 20.72 7.56 87.66 0.66 21.38 16 11 O -0.60 -32.26 15.85 -3.08 -0.05 -32.31 16 12 N -0.48 -21.62 2.15 -645.40 -1.39 -23.01 16 13 C -0.35 -19.58 9.36 84.04 0.79 -18.79 16 14 H 0.04 2.67 7.91 -2.91 -0.02 2.65 16 15 C 0.01 0.60 5.26 84.93 0.45 1.04 16 16 N -0.91 -52.54 13.96 21.66 0.30 -52.24 16 17 Si 0.93 36.00 25.05 68.60 1.72 37.71 16 18 H -0.23 -7.27 6.69 99.48 0.67 -6.61 16 19 H -0.29 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.23 -7.83 7.11 99.48 0.71 -7.13 16 21 C 0.18 6.08 4.27 84.57 0.36 6.44 16 22 C 0.22 8.22 15.00 89.44 1.34 9.56 16 23 N -0.47 -19.31 18.54 20.01 0.37 -18.94 16 24 O -0.40 -10.29 10.32 -148.98 -1.54 -11.83 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.08 8.06 -2.39 -0.02 1.06 16 30 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.31 7.85 -2.39 -0.02 1.30 16 32 H 0.04 1.46 8.10 -2.39 -0.02 1.44 16 33 H 0.08 2.28 8.10 -2.39 -0.02 2.26 16 34 H 0.13 2.84 7.42 -2.39 -0.02 2.82 16 35 H 0.09 2.74 7.22 -2.39 -0.02 2.72 16 36 H 0.28 14.82 8.31 -92.71 -0.77 14.05 16 37 H 0.12 3.93 3.61 -2.39 -0.01 3.92 16 38 H 0.17 3.70 6.70 -2.38 -0.02 3.69 16 Total: -1.00 -76.29 317.10 5.63 -70.66 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 1.01 Total: 19.68 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 5.20 Total: 10.27 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -0.72 Total: -94.18 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -1.59 Total: -44.14 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 1.72 Total: 37.71 kcal Total: -76.29 5.63 -70.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346783072.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.198 kcal (2) G-P(sol) polarization free energy of solvation -76.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds