Wall clock time and date at job start Thu Apr 9 2020 13:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47457 * 2 1 4 4 N 1.46500 * 109.46970 * 120.00168 * 2 1 3 5 5 C 1.47304 * 126.69325 * 119.99846 * 4 2 1 6 6 C 1.51587 * 103.59382 * 180.02562 * 5 4 2 7 7 O 1.21237 * 127.15382 * 179.97438 * 6 5 4 8 8 N 1.34762 * 105.68674 * 359.97438 * 6 5 4 9 9 C 1.46502 * 124.18230 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47109 * 95.29536 * 9 8 6 11 11 C 1.50699 * 115.56055 * 91.02416 * 10 9 8 12 12 H 1.07997 * 120.00029 * 219.84805 * 11 10 9 13 13 C 1.37877 * 120.00284 * 39.84398 * 11 10 9 14 14 N 1.31515 * 119.99631 * 11.57111 * 13 11 10 15 15 Si 1.86793 * 120.00452 * 191.56970 * 13 11 10 16 16 H 1.48500 * 109.47274 * 60.00280 * 15 13 11 17 17 H 1.48500 * 109.47411 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47457 * 300.00205 * 15 13 11 19 19 C 1.52994 * 117.50347 * 305.33278 * 10 9 8 20 20 C 1.52998 * 60.03555 * 252.52449 * 19 10 9 21 21 C 1.33796 * 111.64028 * 0.23155 * 8 6 5 22 22 O 1.21542 * 123.76921 * 179.76459 * 21 8 6 23 23 H 1.09000 * 109.47319 * 300.00335 * 1 2 3 24 24 H 1.09008 * 109.47061 * 59.99977 * 1 2 3 25 25 H 1.08997 * 109.47424 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46806 * 239.99548 * 2 1 3 27 27 H 1.08997 * 109.47224 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.46654 * 299.99665 * 3 2 1 29 29 H 1.09000 * 109.47130 * 59.99549 * 3 2 1 30 30 H 1.09003 * 110.60261 * 61.50774 * 5 4 2 31 31 H 1.09004 * 110.60136 * 298.55605 * 5 4 2 32 32 H 1.09004 * 109.46533 * 335.29731 * 9 8 6 33 33 H 1.08998 * 109.46939 * 215.30247 * 9 8 6 34 34 H 0.97003 * 120.00462 * 174.99166 * 14 13 11 35 35 H 1.09002 * 117.50094 * 145.02134 * 19 10 9 36 36 H 1.09007 * 117.49563 * 0.02755 * 19 10 9 37 37 H 1.08990 * 117.50077 * 107.47461 * 20 19 10 38 38 H 1.09001 * 117.49514 * 252.48241 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8684 -1.8930 1.2329 6 6 3.0523 -2.1543 2.7147 7 8 3.6862 -3.0519 3.2268 8 7 2.3646 -1.1812 3.3443 9 6 2.2706 -1.0499 4.8004 10 6 3.3348 -0.0677 5.2937 11 6 2.9011 1.3732 5.3768 12 1 3.5795 2.1593 5.0798 13 6 1.6383 1.6879 5.8321 14 7 0.8967 0.7649 6.4045 15 14 0.9807 3.4252 5.6359 16 1 0.9409 3.7796 4.1944 17 1 -0.3895 3.5029 6.2032 18 1 1.8681 4.3746 6.3547 19 6 4.7881 -0.3467 4.9052 20 6 4.3260 -0.5697 6.3466 21 6 1.7739 -0.3531 2.4752 22 8 1.0945 0.5994 2.8046 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9562 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 3.8290 -1.6983 0.7559 31 1 2.3651 -2.7334 0.7548 32 1 2.4316 -2.0232 5.2640 33 1 1.2814 -0.6789 5.0685 34 1 0.0386 1.0020 6.7897 35 1 5.4305 0.5119 4.7098 36 1 4.9859 -1.2299 4.2977 37 1 4.2195 -1.5995 6.6873 38 1 4.6647 0.1420 7.0995 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348671448.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:08:35 Heat of formation + Delta-G solvation = -9.660412 kcal Electronic energy + Delta-G solvation = -21785.796766 eV Core-core repulsion = 18630.559747 eV Total energy + Delta-G solvation = -3155.237019 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -41.66244 -38.12158 -36.84746 -35.65052 -34.97457 -32.09233 -31.94759 -27.20547 -27.07830 -26.43170 -25.32695 -22.65146 -21.46440 -21.12933 -19.50781 -18.62157 -16.91868 -16.66590 -15.89489 -15.81462 -15.25757 -14.67068 -14.40509 -13.99305 -13.81850 -13.59160 -13.40138 -13.31752 -12.84694 -12.46155 -12.10067 -11.96058 -11.69059 -11.25609 -11.20245 -11.16502 -10.89825 -10.64525 -10.39962 -10.32232 -10.02903 -9.82472 -9.39846 -8.94171 -8.77562 -8.63881 -8.47958 -8.05920 -6.00046 -4.00092 2.21533 2.67535 3.38764 3.43432 3.50796 3.51456 3.83176 4.48764 4.51054 4.82475 5.07882 5.08734 5.20515 5.25448 5.32256 5.59349 5.65797 5.71173 5.76008 5.97375 6.01522 6.11985 6.30599 6.37042 6.41217 6.45499 6.62285 6.70764 6.82761 6.94469 7.01030 7.14758 7.38255 7.53591 7.90476 8.02171 8.03808 8.45649 8.89480 8.93717 9.61286 11.05138 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.010224 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.824839 B = 2737.927208 C = 3930.640843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.183 3.817 3 C -0.171 4.171 4 N -0.638 5.638 5 C 0.063 3.937 6 C 0.513 3.487 7 O -0.491 6.491 8 N -0.554 5.554 9 C 0.140 3.860 10 C 0.041 3.959 11 C -0.480 4.480 12 H 0.056 0.944 13 C 0.086 3.914 14 N -0.884 5.884 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.288 1.288 18 H -0.282 1.282 19 C -0.209 4.209 20 C -0.191 4.191 21 C 0.697 3.303 22 O -0.505 6.505 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.060 0.940 33 H 0.145 0.855 34 H 0.263 0.737 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.352 -3.879 -13.313 13.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.082 3.918 3 C -0.229 4.229 4 N -0.380 5.380 5 C -0.064 4.064 6 C 0.301 3.699 7 O -0.364 6.364 8 N -0.297 5.297 9 C 0.021 3.979 10 C 0.039 3.961 11 C -0.516 4.516 12 H 0.074 0.926 13 C -0.116 4.116 14 N -0.522 5.522 15 Si 0.725 3.275 16 H -0.197 1.197 17 H -0.214 1.214 18 H -0.208 1.208 19 C -0.246 4.246 20 C -0.229 4.229 21 C 0.399 3.601 22 O -0.375 6.375 23 H 0.095 0.905 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.106 0.894 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.079 0.921 33 H 0.162 0.838 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.009 -3.758 -12.818 13.358 hybrid contribution -0.084 0.775 -0.063 0.782 sum -0.075 -2.983 -12.882 13.223 Atomic orbital electron populations 1.22227 0.94770 1.02304 1.03477 1.20720 0.94168 0.92715 0.84246 1.22228 1.01431 0.95754 1.03468 1.47865 1.54502 1.30091 1.05585 1.22386 0.97728 0.90089 0.96150 1.20818 0.78115 0.81544 0.89462 1.90741 1.39594 1.32222 1.73888 1.46655 1.45921 1.26526 1.10577 1.21891 1.06532 0.97863 0.71585 1.19241 0.85081 0.95209 0.96531 1.20343 0.98488 0.89160 1.43656 0.92587 1.24770 0.96007 0.97299 0.93536 1.69628 1.13100 1.32971 1.36495 0.86569 0.77738 0.84329 0.78815 1.19711 1.21403 1.20830 1.22852 1.01774 1.00990 0.99032 1.22990 1.08896 0.99561 0.91495 1.15891 0.80737 0.82806 0.80623 1.90987 1.39991 1.26943 1.79544 0.90524 0.91553 0.92611 0.89377 0.92439 0.91653 0.90347 0.87238 0.87332 0.92125 0.83806 0.92640 0.90872 0.91282 0.91560 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 9.23 37.16 0.34 -1.68 16 2 C 0.18 2.21 3.58 -67.93 -0.24 1.96 16 3 C -0.17 -2.20 9.23 37.16 0.34 -1.85 16 4 N -0.64 -9.70 2.88 -172.39 -0.50 -10.20 16 5 C 0.06 0.82 7.65 -4.32 -0.03 0.78 16 6 C 0.51 9.33 7.47 -10.56 -0.08 9.25 16 7 O -0.49 -9.92 16.93 5.59 0.09 -9.83 16 8 N -0.55 -11.66 2.42 -120.73 -0.29 -11.95 16 9 C 0.14 3.39 5.44 -4.04 -0.02 3.37 16 10 C 0.04 1.03 1.98 -155.63 -0.31 0.72 16 11 C -0.48 -13.33 9.01 -34.44 -0.31 -13.64 16 12 H 0.06 1.59 7.84 -52.49 -0.41 1.17 16 13 C 0.09 2.39 5.15 -17.82 -0.09 2.30 16 14 N -0.88 -24.80 10.90 55.43 0.60 -24.20 16 15 Si 0.90 22.30 29.56 -169.99 -5.02 17.28 16 16 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 C -0.21 -4.81 9.64 -26.74 -0.26 -5.07 16 20 C -0.19 -4.51 9.89 -26.69 -0.26 -4.78 16 21 C 0.70 14.28 7.78 -88.02 -0.69 13.60 16 22 O -0.50 -12.18 14.96 5.33 0.08 -12.10 16 23 H 0.08 1.19 6.94 -51.93 -0.36 0.83 16 24 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.32 6.98 -51.93 -0.36 0.96 16 30 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.06 1.43 7.63 -51.93 -0.40 1.03 16 33 H 0.14 3.88 5.12 -51.93 -0.27 3.62 16 34 H 0.26 7.14 8.32 -40.82 -0.34 6.80 16 35 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.07 1.54 6.55 -51.92 -0.34 1.20 16 37 H 0.07 1.49 8.03 -51.93 -0.42 1.07 16 38 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 315.69 15.07 4.76 4.76 Total: -1.00 -31.51 315.69 -7.38 -38.89 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.49 Total: 2.40 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -1.61 Total: 4.95 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -0.18 Total: -46.34 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: 0.17 Total: -21.93 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.51 -7.38 -38.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348671448.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.229 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds