Wall clock time and date at job start Thu Apr 9 2020 13:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47457 * 2 1 4 4 N 1.46500 * 109.46970 * 120.00168 * 2 1 3 5 5 C 1.47304 * 126.69325 * 119.99846 * 4 2 1 6 6 C 1.51587 * 103.59382 * 180.02562 * 5 4 2 7 7 O 1.21237 * 127.15382 * 179.97438 * 6 5 4 8 8 N 1.34762 * 105.68674 * 359.97438 * 6 5 4 9 9 C 1.46502 * 124.18230 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47109 * 95.29536 * 9 8 6 11 11 C 1.50699 * 115.56055 * 91.02416 * 10 9 8 12 12 H 1.07997 * 120.00029 * 219.84805 * 11 10 9 13 13 C 1.37877 * 120.00284 * 39.84398 * 11 10 9 14 14 N 1.31515 * 119.99631 * 11.57111 * 13 11 10 15 15 Si 1.86793 * 120.00452 * 191.56970 * 13 11 10 16 16 H 1.48500 * 109.47274 * 60.00280 * 15 13 11 17 17 H 1.48500 * 109.47411 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47457 * 300.00205 * 15 13 11 19 19 C 1.52994 * 117.50347 * 305.33278 * 10 9 8 20 20 C 1.52998 * 60.03555 * 252.52449 * 19 10 9 21 21 C 1.33796 * 111.64028 * 0.23155 * 8 6 5 22 22 O 1.21542 * 123.76921 * 179.76459 * 21 8 6 23 23 H 1.09000 * 109.47319 * 300.00335 * 1 2 3 24 24 H 1.09008 * 109.47061 * 59.99977 * 1 2 3 25 25 H 1.08997 * 109.47424 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46806 * 239.99548 * 2 1 3 27 27 H 1.08997 * 109.47224 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.46654 * 299.99665 * 3 2 1 29 29 H 1.09000 * 109.47130 * 59.99549 * 3 2 1 30 30 H 1.09003 * 110.60261 * 61.50774 * 5 4 2 31 31 H 1.09004 * 110.60136 * 298.55605 * 5 4 2 32 32 H 1.09004 * 109.46533 * 335.29731 * 9 8 6 33 33 H 1.08998 * 109.46939 * 215.30247 * 9 8 6 34 34 H 0.97003 * 120.00462 * 174.99166 * 14 13 11 35 35 H 1.09002 * 117.50094 * 145.02134 * 19 10 9 36 36 H 1.09007 * 117.49563 * 0.02755 * 19 10 9 37 37 H 1.08990 * 117.50077 * 107.47461 * 20 19 10 38 38 H 1.09001 * 117.49514 * 252.48241 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8684 -1.8930 1.2329 6 6 3.0523 -2.1543 2.7147 7 8 3.6862 -3.0519 3.2268 8 7 2.3646 -1.1812 3.3443 9 6 2.2706 -1.0499 4.8004 10 6 3.3348 -0.0677 5.2937 11 6 2.9011 1.3732 5.3768 12 1 3.5795 2.1593 5.0798 13 6 1.6383 1.6879 5.8321 14 7 0.8967 0.7649 6.4045 15 14 0.9807 3.4252 5.6359 16 1 0.9409 3.7796 4.1944 17 1 -0.3895 3.5029 6.2032 18 1 1.8681 4.3746 6.3547 19 6 4.7881 -0.3467 4.9052 20 6 4.3260 -0.5697 6.3466 21 6 1.7739 -0.3531 2.4752 22 8 1.0945 0.5994 2.8046 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9562 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 3.8290 -1.6983 0.7559 31 1 2.3651 -2.7334 0.7548 32 1 2.4316 -2.0232 5.2640 33 1 1.2814 -0.6789 5.0685 34 1 0.0386 1.0020 6.7897 35 1 5.4305 0.5119 4.7098 36 1 4.9859 -1.2299 4.2977 37 1 4.2195 -1.5995 6.6873 38 1 4.6647 0.1420 7.0995 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348671448.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:08:32 Heat of formation + Delta-G solvation = -29.033570 kcal Electronic energy + Delta-G solvation = -21786.636849 eV Core-core repulsion = 18630.559747 eV Total energy + Delta-G solvation = -3156.077102 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 3.00 seconds Orbital eigenvalues (eV) -43.10072 -39.58578 -38.62193 -37.09744 -36.42301 -34.19948 -33.24966 -28.61450 -28.04822 -28.03114 -27.35625 -23.99760 -23.08179 -22.75388 -21.23845 -20.15814 -18.62333 -18.06266 -17.49485 -17.31039 -16.67088 -16.52484 -15.98728 -15.62397 -15.15765 -15.06028 -14.94672 -14.59631 -14.39067 -13.75536 -13.51824 -13.23750 -13.05668 -12.97556 -12.92608 -12.64321 -12.40668 -12.31607 -12.17612 -12.14304 -11.83669 -11.40183 -11.04937 -10.80929 -10.73585 -10.34745 -10.08736 -9.77636 -8.11652 -6.16045 0.81469 1.32391 1.36599 1.42293 1.47936 2.22662 2.32756 2.41926 3.04517 3.24516 3.59655 3.81045 4.13171 4.16416 4.24967 4.35742 4.40708 4.41941 4.52310 4.58862 4.67854 4.79232 4.79767 4.82216 4.95417 4.97852 5.08775 5.13441 5.25208 5.40006 5.43562 5.49305 5.59322 5.76317 5.90748 6.33107 6.51975 6.57897 6.78154 7.41295 7.46453 8.92073 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.010224 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.824839 B = 2737.927208 C = 3930.640843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.177 3.823 3 C -0.168 4.168 4 N -0.625 5.625 5 C 0.077 3.923 6 C 0.505 3.495 7 O -0.516 6.516 8 N -0.569 5.569 9 C 0.151 3.849 10 C 0.016 3.984 11 C -0.494 4.494 12 H 0.041 0.959 13 C 0.053 3.947 14 N -0.900 5.900 15 Si 0.941 3.059 16 H -0.284 1.284 17 H -0.282 1.282 18 H -0.272 1.272 19 C -0.187 4.187 20 C -0.189 4.189 21 C 0.687 3.313 22 O -0.556 6.556 23 H 0.030 0.970 24 H 0.095 0.905 25 H 0.064 0.936 26 H 0.144 0.856 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.027 0.973 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.057 0.943 33 H 0.113 0.887 34 H 0.262 0.738 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.132 -4.804 -16.218 16.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.077 3.923 3 C -0.226 4.226 4 N -0.366 5.366 5 C -0.048 4.048 6 C 0.295 3.705 7 O -0.391 6.391 8 N -0.312 5.312 9 C 0.030 3.970 10 C 0.015 3.985 11 C -0.531 4.531 12 H 0.059 0.941 13 C -0.148 4.148 14 N -0.538 5.538 15 Si 0.768 3.232 16 H -0.210 1.210 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.224 4.224 20 C -0.227 4.227 21 C 0.389 3.611 22 O -0.429 6.429 23 H 0.049 0.951 24 H 0.114 0.886 25 H 0.083 0.917 26 H 0.162 0.838 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.046 0.954 30 H 0.167 0.833 31 H 0.174 0.826 32 H 0.076 0.924 33 H 0.131 0.869 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.814 -4.706 -15.772 16.479 hybrid contribution -0.313 1.033 0.788 1.336 sum 0.501 -3.672 -14.984 15.436 Atomic orbital electron populations 1.22195 0.94922 1.02637 1.02622 1.21171 0.94165 0.92494 0.84448 1.22204 1.01472 0.96427 1.02479 1.48074 1.53759 1.30494 1.04271 1.22675 0.99686 0.90376 0.92012 1.21704 0.76862 0.80206 0.91757 1.90725 1.40438 1.32858 1.75075 1.46675 1.47031 1.27895 1.09588 1.21357 1.04449 0.96974 0.74173 1.19284 0.86449 0.94490 0.98298 1.20472 0.98655 0.90225 1.43775 0.94063 1.25266 0.96208 0.99868 0.93477 1.69741 1.13105 1.33967 1.36999 0.85875 0.77687 0.81658 0.77935 1.20994 1.20752 1.19693 1.22770 1.00021 1.01162 0.98472 1.22982 1.08068 0.99951 0.91723 1.16195 0.80418 0.82249 0.82249 1.90950 1.42207 1.29070 1.80687 0.95107 0.88645 0.91656 0.83796 0.92235 0.88574 0.95360 0.83314 0.82625 0.92413 0.86920 0.92809 0.90641 0.90373 0.90508 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.58 9.23 71.98 0.66 -2.92 16 2 C 0.18 3.61 3.58 44.99 0.16 3.77 16 3 C -0.17 -3.98 9.23 71.98 0.66 -3.31 16 4 N -0.62 -17.27 2.88 -817.74 -2.36 -19.63 16 5 C 0.08 1.63 7.65 85.76 0.66 2.29 16 6 C 0.50 17.32 7.47 87.94 0.66 17.98 16 7 O -0.52 -19.98 16.93 -2.90 -0.05 -20.03 16 8 N -0.57 -23.90 2.42 -773.11 -1.87 -25.77 16 9 C 0.15 7.51 5.44 86.38 0.47 7.98 16 10 C 0.02 0.82 1.98 -52.91 -0.10 0.72 16 11 C -0.49 -28.23 9.01 25.60 0.23 -28.00 16 12 H 0.04 2.40 7.84 -2.91 -0.02 2.38 16 13 C 0.05 2.99 5.15 84.65 0.44 3.43 16 14 N -0.90 -52.12 10.90 21.45 0.23 -51.88 16 15 Si 0.94 46.97 29.56 68.60 2.03 49.00 16 16 H -0.28 -14.62 7.11 99.48 0.71 -13.92 16 17 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 18 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 19 C -0.19 -8.51 9.64 30.59 0.29 -8.22 16 20 C -0.19 -8.94 9.89 30.62 0.30 -8.64 16 21 C 0.69 28.12 7.78 179.44 1.40 29.52 16 22 O -0.56 -27.92 14.96 -3.85 -0.06 -27.98 16 23 H 0.03 0.95 6.94 -2.39 -0.02 0.94 16 24 H 0.09 1.47 8.14 -2.38 -0.02 1.46 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.14 1.49 8.12 -2.39 -0.02 1.47 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.03 0.95 6.98 -2.39 -0.02 0.94 16 30 H 0.15 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.16 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.06 2.80 7.63 -2.39 -0.02 2.78 16 33 H 0.11 6.36 5.12 -2.39 -0.01 6.35 16 34 H 0.26 14.65 8.32 -92.71 -0.77 13.88 16 35 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 36 H 0.08 3.40 6.55 -2.38 -0.02 3.38 16 37 H 0.08 3.43 8.03 -2.39 -0.02 3.41 16 38 H 0.08 3.62 8.14 -2.39 -0.02 3.60 16 Total: -1.00 -73.29 315.69 4.81 -68.48 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 1.05 Total: 13.21 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 5.83 Total: 14.59 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -3.99 Total: -97.28 kcal Atomic # 8 Polarization: -47.90 SS G_CDS: -0.11 Total: -48.00 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -73.29 4.81 -68.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348671448.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.448 kcal (2) G-P(sol) polarization free energy of solvation -73.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.00 seconds