Wall clock time and date at job start Thu Apr 9 2020 13:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47245 * 2 1 4 4 N 1.46497 * 109.47044 * 179.97438 * 3 2 1 5 5 C 1.47307 * 126.69281 * 90.00258 * 4 3 2 6 6 C 1.51587 * 103.59430 * 179.97438 * 5 4 3 7 7 O 1.21231 * 127.15712 * 179.97438 * 6 5 4 8 8 N 1.34764 * 105.68569 * 359.97438 * 6 5 4 9 9 C 1.46502 * 124.18125 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47228 * 95.29382 * 9 8 6 11 11 C 1.50698 * 115.56001 * 91.02338 * 10 9 8 12 12 H 1.08005 * 119.99477 * 219.84505 * 11 10 9 13 13 C 1.37870 * 120.00313 * 39.84470 * 11 10 9 14 14 N 1.31515 * 119.99911 * 11.57060 * 13 11 10 15 15 Si 1.86802 * 120.00236 * 191.56592 * 13 11 10 16 16 H 1.48501 * 109.46755 * 60.00546 * 15 13 11 17 17 H 1.48503 * 109.47086 * 179.97438 * 15 13 11 18 18 H 1.48490 * 109.47367 * 300.00475 * 15 13 11 19 19 C 1.52994 * 117.50021 * 305.33122 * 10 9 8 20 20 C 1.52998 * 60.03555 * 252.52545 * 19 10 9 21 21 C 1.33796 * 111.64135 * 0.22881 * 8 6 5 22 22 O 1.21542 * 123.76921 * 179.76893 * 21 8 6 23 23 H 1.09003 * 109.47308 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47520 * 300.00576 * 1 2 3 25 25 H 1.09006 * 109.46780 * 60.00322 * 1 2 3 26 26 H 1.08996 * 109.47520 * 239.99424 * 2 1 3 27 27 H 1.09006 * 109.46780 * 119.99678 * 2 1 3 28 28 H 1.08996 * 109.47332 * 59.99308 * 3 2 1 29 29 H 1.09006 * 109.46968 * 299.99563 * 3 2 1 30 30 H 1.09000 * 110.60115 * 61.43526 * 5 4 3 31 31 H 1.08999 * 110.72900 * 298.54782 * 5 4 3 32 32 H 1.09003 * 109.46604 * 335.29793 * 9 8 6 33 33 H 1.08998 * 109.46939 * 215.29758 * 9 8 6 34 34 H 0.97001 * 120.00103 * 174.99485 * 14 13 11 35 35 H 1.09002 * 117.50094 * 145.02230 * 19 10 9 36 36 H 1.09006 * 117.50081 * 0.02823 * 19 10 9 37 37 H 1.08997 * 117.50453 * 107.47626 * 20 19 10 38 38 H 1.09001 * 117.49514 * 252.48241 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.3856 1.4423 -1.1802 6 6 5.7797 1.4430 -0.5849 7 8 6.8326 1.4427 -1.1859 8 7 5.6053 1.4440 0.7514 9 6 6.7005 1.4444 1.7244 10 6 6.9938 2.8809 2.1616 11 6 6.2371 3.3590 3.3740 12 1 5.8495 4.3665 3.4059 13 6 6.0397 2.5102 4.4423 14 7 6.6957 1.3722 4.5081 15 14 4.8404 2.9765 5.7965 16 1 3.4832 3.1473 5.2185 17 1 4.8096 1.9026 6.8218 18 1 5.2745 4.2497 6.4254 19 6 7.2924 3.9059 1.0657 20 6 8.4204 3.4012 1.9678 21 6 4.3082 1.4391 1.0797 22 8 3.9012 1.4348 2.2249 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6767 1.9563 -0.8901 30 1 4.2239 2.3384 -1.7794 31 1 4.2257 0.5468 -1.7806 32 1 7.5921 1.0143 1.2680 33 1 6.4149 0.8513 2.5931 34 1 6.6124 0.8090 5.2934 35 1 6.9415 4.9261 1.2215 36 1 7.2794 3.5569 0.0331 37 1 9.1492 2.7199 1.5290 38 1 8.8117 4.0895 2.7170 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348673705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:08:39 Heat of formation + Delta-G solvation = -14.015540 kcal Electronic energy + Delta-G solvation = -21364.789015 eV Core-core repulsion = 18209.363143 eV Total energy + Delta-G solvation = -3155.425872 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.64353 -38.02916 -36.82766 -35.69513 -34.89046 -32.70951 -32.09185 -28.52477 -26.48574 -25.70549 -25.04296 -22.20161 -21.36169 -21.14255 -20.02491 -18.80772 -17.00028 -16.61008 -16.13144 -15.81990 -15.24797 -14.71818 -14.52184 -14.32206 -14.04123 -13.66296 -13.49550 -13.31845 -12.97721 -12.61554 -12.15358 -12.00424 -11.71094 -11.41931 -11.23741 -10.91702 -10.79104 -10.64174 -10.41721 -10.35752 -10.07894 -9.86989 -9.51213 -8.95432 -8.78538 -8.66616 -8.49657 -8.06266 -6.00318 -4.00446 2.19529 2.67144 3.38820 3.43661 3.50271 3.51822 3.80041 4.48761 4.51200 4.81113 4.90927 5.08292 5.15428 5.19402 5.24558 5.32755 5.57951 5.59534 5.70784 5.83771 5.94473 6.07901 6.15286 6.19097 6.35092 6.42287 6.49353 6.70356 6.80906 6.88457 7.00205 7.14108 7.37948 7.52130 7.87911 8.00357 8.02740 8.45115 8.86208 8.92638 9.61044 11.04917 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.008768 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.694128 B = 3192.530921 C = 4524.798643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.146 4.146 3 C 0.155 3.845 4 N -0.640 5.640 5 C 0.064 3.936 6 C 0.514 3.486 7 O -0.490 6.490 8 N -0.553 5.553 9 C 0.140 3.860 10 C 0.039 3.961 11 C -0.480 4.480 12 H 0.056 0.944 13 C 0.086 3.914 14 N -0.884 5.884 15 Si 0.898 3.102 16 H -0.272 1.272 17 H -0.288 1.288 18 H -0.282 1.282 19 C -0.209 4.209 20 C -0.190 4.190 21 C 0.695 3.305 22 O -0.507 6.507 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.145 0.855 34 H 0.264 0.736 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.293 -2.671 -11.016 14.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C 0.034 3.966 4 N -0.382 5.382 5 C -0.063 4.063 6 C 0.301 3.699 7 O -0.363 6.363 8 N -0.296 5.296 9 C 0.021 3.979 10 C 0.038 3.962 11 C -0.517 4.517 12 H 0.075 0.925 13 C -0.117 4.117 14 N -0.522 5.522 15 Si 0.726 3.274 16 H -0.197 1.197 17 H -0.214 1.214 18 H -0.208 1.208 19 C -0.246 4.246 20 C -0.228 4.228 21 C 0.397 3.603 22 O -0.376 6.376 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.080 0.920 33 H 0.162 0.838 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.047 -2.869 -10.485 14.142 hybrid contribution -0.465 0.324 0.538 0.782 sum -9.512 -2.545 -9.946 13.996 Atomic orbital electron populations 1.21679 0.95062 1.01904 1.01944 1.21985 0.96082 0.97515 1.02865 1.21253 0.75181 0.96812 1.03368 1.47661 1.05763 1.79235 1.05497 1.22367 0.88161 1.05118 0.90671 1.20813 0.90816 0.74968 0.83308 1.90740 1.30946 1.47951 1.66696 1.46633 1.08723 1.65627 1.08637 1.21900 0.84977 1.00079 0.90908 1.19256 0.93664 0.89379 0.93939 1.20350 1.33907 0.98249 0.99202 0.92547 1.24780 0.94588 0.94384 0.97931 1.69626 1.41169 1.12595 1.28827 0.86563 0.82636 0.77517 0.80719 1.19725 1.21358 1.20777 1.22855 1.06947 0.99711 0.95129 1.22985 0.93197 1.04441 1.02222 1.15922 0.81022 0.78155 0.85166 1.91017 1.76400 1.52005 1.18210 0.92529 0.92336 0.92689 0.91884 0.91167 0.89459 0.90238 0.87152 0.87333 0.92044 0.83811 0.92618 0.90839 0.91263 0.91543 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.15 0.37 -0.88 16 2 C -0.15 -1.53 6.26 -26.73 -0.17 -1.70 16 3 C 0.16 1.83 6.15 -4.04 -0.02 1.80 16 4 N -0.64 -9.72 3.02 -180.01 -0.54 -10.27 16 5 C 0.06 0.82 7.66 -4.32 -0.03 0.78 16 6 C 0.51 9.31 7.47 -10.55 -0.08 9.23 16 7 O -0.49 -9.87 16.93 5.60 0.09 -9.77 16 8 N -0.55 -11.70 2.42 -120.73 -0.29 -11.99 16 9 C 0.14 3.40 5.44 -4.04 -0.02 3.38 16 10 C 0.04 0.99 1.98 -155.62 -0.31 0.68 16 11 C -0.48 -13.43 9.01 -34.44 -0.31 -13.74 16 12 H 0.06 1.60 7.84 -52.48 -0.41 1.19 16 13 C 0.09 2.39 5.15 -17.82 -0.09 2.30 16 14 N -0.88 -24.94 10.90 55.43 0.60 -24.34 16 15 Si 0.90 22.43 29.56 -169.99 -5.02 17.40 16 16 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 C -0.21 -4.81 9.64 -26.74 -0.26 -5.06 16 20 C -0.19 -4.49 9.89 -26.69 -0.26 -4.75 16 21 C 0.70 14.45 8.31 -88.02 -0.73 13.71 16 22 O -0.51 -12.61 17.23 5.33 0.09 -12.52 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.09 1.16 8.03 -51.93 -0.42 0.74 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 1.45 7.63 -51.93 -0.40 1.05 16 33 H 0.14 3.90 5.12 -51.93 -0.27 3.63 16 34 H 0.26 7.17 8.32 -40.82 -0.34 6.83 16 35 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 36 H 0.07 1.54 6.55 -51.93 -0.34 1.20 16 37 H 0.07 1.49 8.03 -51.93 -0.42 1.07 16 38 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 321.18 15.07 4.84 4.84 Total: -1.00 -32.05 321.18 -7.76 -39.81 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.61 Total: 1.08 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -1.92 Total: 5.75 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.23 Total: -46.59 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.19 Total: -22.29 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.05 -7.76 -39.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348673705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.792 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds