Wall clock time and date at job start Thu Apr 9 2020 13:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47476 * 2 1 4 4 N 1.46498 * 109.47158 * 179.97438 * 3 2 1 5 5 C 1.36950 * 119.99559 * 97.33105 * 4 3 2 6 6 H 1.07995 * 119.99707 * 219.81506 * 5 4 3 7 7 C 1.38983 * 120.00078 * 39.82371 * 5 4 3 8 8 N 1.31402 * 119.99964 * 17.77962 * 7 5 4 9 9 Si 1.86802 * 120.00007 * 197.78663 * 7 5 4 10 10 H 1.48500 * 109.47183 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47392 * 119.99634 * 9 7 5 12 12 H 1.48498 * 109.47077 * 239.99574 * 9 7 5 13 13 C 1.34769 * 120.00376 * 277.60881 * 4 3 2 14 14 O 1.21652 * 120.00001 * 4.66656 * 13 4 3 15 15 C 1.47326 * 120.00129 * 184.67380 * 13 4 3 16 16 N 1.36081 * 126.45849 * 6.09834 * 15 13 4 17 17 C 1.29933 * 108.48615 * 180.02562 * 16 15 13 18 18 C 1.50692 * 125.36872 * 179.97438 * 17 16 15 19 19 C 1.52998 * 109.47530 * 89.99977 * 18 17 16 20 20 O 1.34058 * 109.26500 * 0.02562 * 17 16 15 21 21 C 1.34283 * 108.22777 * 359.73380 * 20 17 16 22 22 C 1.50697 * 126.53202 * 180.26456 * 21 20 17 23 23 H 1.09001 * 109.46705 * 300.00420 * 1 2 3 24 24 H 1.09000 * 109.46695 * 59.99845 * 1 2 3 25 25 H 1.08999 * 109.47320 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47218 * 239.99558 * 2 1 3 27 27 H 1.09004 * 109.47169 * 120.00103 * 2 1 3 28 28 H 1.09000 * 109.46807 * 59.99785 * 3 2 1 29 29 H 1.09000 * 109.47285 * 299.99794 * 3 2 1 30 30 H 0.97009 * 119.99839 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.47129 * 210.00046 * 18 17 16 32 32 H 1.09005 * 109.47431 * 329.99904 * 18 17 16 33 33 H 1.09003 * 109.46970 * 300.00166 * 19 18 17 34 34 H 1.08996 * 109.46903 * 59.99725 * 19 18 17 35 35 H 1.08998 * 109.47317 * 180.02562 * 19 18 17 36 36 H 1.08997 * 109.47513 * 270.18810 * 22 21 20 37 37 H 1.09002 * 109.47011 * 30.19095 * 22 21 20 38 38 H 1.09000 * 109.46860 * 150.18489 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1902 1.5935 -1.1755 6 1 5.0824 1.0133 -1.3590 7 6 3.7375 2.4937 -2.1328 8 7 2.8864 3.4369 -1.7972 9 14 4.3388 2.3626 -3.8965 10 1 5.2855 1.2245 -4.0134 11 1 3.1810 2.1387 -4.7989 12 1 5.0285 3.6208 -4.2791 13 6 4.1785 1.2880 1.1577 14 8 3.5729 1.0639 2.1887 15 6 5.6481 1.3907 1.1741 16 7 6.4453 1.7490 0.1312 17 6 7.6817 1.7240 0.5302 18 6 8.8799 2.0559 -0.3213 19 6 9.1851 3.5511 -0.2119 20 8 7.7234 1.3554 1.8184 21 6 6.4643 1.1490 2.2372 22 6 6.0364 0.7273 3.6192 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 2.5701 4.0650 -2.4654 31 1 9.7407 1.4831 0.0238 32 1 8.6684 1.8033 -1.3604 33 1 8.3243 4.1238 -0.5570 34 1 9.3966 3.8036 0.8271 35 1 10.0515 3.7911 -0.8281 36 1 6.0050 -0.3609 3.6737 37 1 6.7483 1.1074 4.3518 38 1 5.0462 1.1304 3.8318 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350679894.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:08:42 Heat of formation + Delta-G solvation = -41.028762 kcal Electronic energy + Delta-G solvation = -21011.673511 eV Core-core repulsion = 17855.076258 eV Total energy + Delta-G solvation = -3156.597253 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -44.22218 -40.34987 -37.06294 -35.87093 -34.96647 -34.40366 -33.08031 -32.40539 -28.43748 -27.51363 -26.49398 -24.93927 -23.58858 -22.57832 -21.66838 -20.98564 -19.28650 -17.94833 -17.67178 -16.89866 -16.61051 -16.17961 -15.68012 -15.47920 -15.45906 -15.16478 -14.64732 -14.25036 -14.11177 -13.96478 -13.46268 -13.38963 -13.26956 -13.08904 -12.98608 -12.64837 -12.58094 -12.44670 -12.18040 -12.02598 -12.00697 -11.87512 -11.54765 -11.25124 -10.95278 -10.51123 -9.69255 -9.34881 -8.26404 -5.96269 0.24461 1.25677 1.44747 1.47269 1.58789 1.65256 2.32884 2.53579 2.81174 3.08208 3.29167 3.83429 4.09827 4.16803 4.20974 4.28972 4.32290 4.40390 4.47376 4.56042 4.62296 4.69387 4.78376 4.95197 4.95531 4.99990 5.07802 5.08529 5.21131 5.21962 5.26565 5.33706 5.40844 5.52291 5.65236 6.01914 6.52123 6.78836 7.17144 7.54308 7.95546 8.78414 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.014474 B = 0.009111 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.019512 B = 3072.500227 C = 4687.673328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.125 4.125 3 C 0.125 3.875 4 N -0.429 5.429 5 C -0.313 4.313 6 H 0.097 0.903 7 C 0.001 3.999 8 N -0.901 5.901 9 Si 0.981 3.019 10 H -0.261 1.261 11 H -0.275 1.275 12 H -0.279 1.279 13 C 0.519 3.481 14 O -0.620 6.620 15 C -0.071 4.071 16 N -0.453 5.453 17 C 0.166 3.834 18 C -0.019 4.019 19 C -0.145 4.145 20 O -0.201 6.201 21 C 0.004 3.996 22 C -0.060 4.060 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.033 0.967 29 H 0.089 0.911 30 H 0.269 0.731 31 H 0.123 0.877 32 H 0.108 0.892 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.093 -3.646 1.998 9.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 C 0.002 3.998 4 N -0.145 5.145 5 C -0.441 4.441 6 H 0.115 0.885 7 C -0.201 4.201 8 N -0.539 5.539 9 Si 0.805 3.195 10 H -0.185 1.185 11 H -0.200 1.200 12 H -0.205 1.205 13 C 0.309 3.691 14 O -0.509 6.509 15 C -0.190 4.190 16 N -0.181 5.181 17 C -0.043 4.043 18 C -0.057 4.057 19 C -0.203 4.203 20 O -0.089 6.089 21 C -0.052 4.052 22 C -0.116 4.116 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.141 0.859 32 H 0.126 0.874 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.467 -3.432 1.758 9.304 hybrid contribution 0.084 0.229 -0.170 0.297 sum 8.552 -3.203 1.588 9.269 Atomic orbital electron populations 1.21598 0.93251 1.02459 1.01838 1.21738 0.97530 0.96494 1.00626 1.21390 0.80446 0.96480 1.01514 1.43662 1.05595 1.59541 1.05652 1.19855 1.10469 1.21757 0.92051 0.88540 1.26193 0.96872 0.92984 1.04041 1.70059 1.33438 1.14933 1.35481 0.85059 0.78358 0.78447 0.77650 1.18451 1.20031 1.20531 1.17513 0.85124 0.82746 0.83703 1.90534 1.69290 1.57988 1.33080 1.21632 0.95784 1.10422 0.91189 1.71291 1.00657 1.16569 1.29594 1.27501 0.96818 0.99325 0.80685 1.20303 0.89302 0.99139 0.96943 1.21761 1.02530 0.92917 1.03043 1.84228 1.29697 1.66471 1.28508 1.24088 0.80336 1.01664 0.99126 1.20498 1.02901 1.03005 0.85173 0.92758 0.92498 0.90766 0.92774 0.93739 0.94847 0.89340 0.92126 0.85873 0.87401 0.94399 0.92225 0.87882 0.88392 0.87743 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 9.91 71.98 0.71 -3.73 16 2 C -0.13 -5.34 6.17 30.59 0.19 -5.15 16 3 C 0.12 6.36 4.79 86.38 0.41 6.78 16 4 N -0.43 -23.76 2.52 -639.36 -1.61 -25.37 16 5 C -0.31 -17.29 7.70 84.07 0.65 -16.64 16 6 H 0.10 5.40 6.33 -2.91 -0.02 5.39 16 7 C 0.00 0.03 4.95 84.94 0.42 0.45 16 8 N -0.90 -50.48 11.52 21.67 0.25 -50.23 16 9 Si 0.98 42.18 29.59 68.60 2.03 44.21 16 10 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 11 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 12 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 13 C 0.52 28.31 7.55 86.64 0.65 28.96 16 14 O -0.62 -33.95 14.22 -4.20 -0.06 -34.01 16 15 C -0.07 -3.47 6.67 40.40 0.27 -3.20 16 16 N -0.45 -21.18 8.34 -293.04 -2.44 -23.62 16 17 C 0.17 6.07 7.56 88.39 0.67 6.74 16 18 C -0.02 -0.46 6.56 29.84 0.20 -0.27 16 19 C -0.14 -3.18 9.89 71.98 0.71 -2.47 16 20 O -0.20 -7.23 10.73 0.05 0.00 -7.23 16 21 C 0.00 0.17 7.44 25.21 0.19 0.36 16 22 C -0.06 -1.86 9.94 71.24 0.71 -1.15 16 23 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.04 1.98 7.83 -2.38 -0.02 1.96 16 28 H 0.03 1.77 7.73 -2.39 -0.02 1.75 16 29 H 0.09 4.74 5.68 -2.39 -0.01 4.73 16 30 H 0.27 14.13 8.31 -92.70 -0.77 13.36 16 31 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.11 2.56 8.14 -2.38 -0.02 2.54 16 33 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.09 3.28 6.38 -2.39 -0.02 3.27 16 Total: -1.00 -70.62 319.19 5.00 -65.62 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 1.05 Total: 19.95 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 5.78 Total: 10.68 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -3.81 Total: -99.23 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -0.06 Total: -41.23 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -70.62 5.00 -65.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350679894.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.594 kcal (2) G-P(sol) polarization free energy of solvation -70.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds