Wall clock time and date at job start Thu Apr 9 2020 13:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.49163 * 2 1 4 4 C 1.53091 * 109.47856 * 239.97244 * 2 1 3 5 5 C 1.53174 * 109.16422 * 182.41114 * 4 2 1 6 6 H 1.08996 * 109.54954 * 176.93520 * 5 4 2 7 7 C 1.50708 * 109.54217 * 297.11071 * 5 4 2 8 8 O 1.21293 * 119.99629 * 21.31278 * 7 5 4 9 9 N 1.34777 * 120.00259 * 201.31263 * 7 5 4 10 10 C 1.37094 * 119.99696 * 4.17342 * 9 7 5 11 11 H 1.07999 * 120.00340 * 345.69862 * 10 9 7 12 12 C 1.38954 * 119.99653 * 165.69209 * 10 9 7 13 13 N 1.31403 * 120.00279 * 334.28890 * 12 10 9 14 14 Si 1.86802 * 119.99869 * 154.28422 * 12 10 9 15 15 H 1.48505 * 109.47168 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47060 * 119.99898 * 14 12 10 17 17 H 1.48495 * 109.47392 * 240.00407 * 14 12 10 18 18 C 1.46498 * 119.99939 * 184.17683 * 9 7 5 19 19 C 1.47208 * 109.46912 * 267.88809 * 18 9 7 20 20 N 6.55372 * 128.04183 * 310.95281 * 2 1 3 21 21 C 1.53173 * 109.03843 * 56.97580 * 5 4 2 22 22 C 1.53089 * 109.16697 * 303.02335 * 21 5 4 23 23 H 1.09007 * 109.48829 * 297.62360 * 22 21 5 24 24 C 1.52996 * 109.48487 * 177.59271 * 22 21 5 25 25 O 1.42904 * 109.41637 * 57.60502 * 22 21 5 26 26 H 1.09004 * 109.47213 * 299.97005 * 1 2 3 27 27 H 1.08998 * 109.47490 * 59.97299 * 1 2 3 28 28 H 1.09006 * 109.47091 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.52103 * 302.31349 * 4 2 1 30 30 H 1.08995 * 109.52477 * 62.43944 * 4 2 1 31 31 H 0.97001 * 120.00168 * 179.97438 * 13 12 10 32 32 H 1.08995 * 109.47498 * 27.88448 * 18 9 7 33 33 H 1.08992 * 109.47032 * 147.89538 * 18 9 7 34 34 H 1.09004 * 109.52505 * 183.11687 * 21 5 4 35 35 H 1.08999 * 109.52212 * 62.92887 * 21 5 4 36 36 H 1.09004 * 109.47074 * 300.05543 * 24 22 21 37 37 H 1.09001 * 109.47307 * 180.02562 * 24 22 21 38 38 H 1.08992 * 109.47248 * 60.05972 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7222 -1.2496 5 6 3.5710 -0.7710 -1.2122 6 1 3.9391 -1.3314 -2.0715 7 6 4.1211 0.6316 -1.2519 8 8 3.4228 1.5664 -0.9209 9 7 5.3890 0.8470 -1.6551 10 6 6.1504 -0.1982 -2.1103 11 1 5.8316 -1.2150 -1.9352 12 6 7.3324 0.0509 -2.7971 13 7 7.4886 1.1818 -3.4477 14 14 8.6996 -1.2220 -2.7953 15 1 8.2780 -2.4002 -1.9955 16 1 8.9824 -1.6467 -4.1899 17 1 9.9250 -0.6316 -2.1994 18 6 5.9533 2.1981 -1.6069 19 6 5.7362 2.8669 -2.9002 20 7 5.5686 3.3830 -3.8982 21 6 4.0175 -1.4601 0.0808 22 6 3.4307 -0.7094 1.2790 23 1 3.8192 0.3090 1.2959 24 6 3.8227 -1.4266 2.5724 25 8 2.0066 -0.6742 1.1664 26 1 -0.3634 0.5134 0.8903 27 1 -0.3634 0.5142 -0.8897 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6442 -1.7375 -1.2709 30 1 1.7138 -0.1849 -2.1399 31 1 8.3139 1.3558 -3.9268 32 1 5.4648 2.7680 -0.8167 33 1 7.0225 2.1382 -1.4040 34 1 5.1058 -1.4498 0.1420 35 1 3.6612 -2.4902 0.0863 36 1 3.4345 -2.4450 2.5551 37 1 3.4045 -0.8922 3.4253 38 1 4.9090 -1.4532 2.6581 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354400198.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:08:51 Heat of formation + Delta-G solvation = -53.802952 kcal Electronic energy + Delta-G solvation = -21510.030682 eV Core-core repulsion = 18352.879499 eV Total energy + Delta-G solvation = -3157.151183 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.07425 -37.92344 -35.60212 -34.37678 -33.28268 -33.01094 -31.74716 -29.43608 -27.66748 -25.96555 -25.05950 -22.78491 -21.37403 -20.65729 -19.11199 -17.62887 -16.27769 -16.21549 -16.01035 -15.23896 -14.61803 -14.51969 -14.35230 -13.80884 -13.51773 -13.13364 -12.73801 -12.45342 -12.29721 -12.17515 -11.89922 -11.71721 -11.67665 -11.58987 -11.37590 -11.27977 -11.26994 -11.12630 -10.61493 -10.56022 -10.40043 -10.26627 -10.17498 -9.90014 -9.38338 -9.00124 -8.25235 -8.14911 -6.64608 -4.14105 2.97216 3.12158 3.15354 3.53013 3.78331 4.02752 4.15513 4.28761 4.73106 4.82791 5.16287 5.26025 5.33215 5.38392 5.51546 5.61691 5.72232 5.79105 5.85330 5.92490 5.99795 6.03183 6.08685 6.18449 6.30752 6.33431 6.38535 6.43787 6.48346 6.54355 6.57159 6.60939 6.81721 7.24778 7.43335 7.82180 8.08613 8.83861 9.01379 9.18674 9.60080 10.38745 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020159 B = 0.007462 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.638567 B = 3751.494143 C = 4559.152565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.066 3.934 3 H 0.108 0.892 4 C -0.124 4.124 5 C -0.095 4.095 6 H 0.095 0.905 7 C 0.470 3.530 8 O -0.595 6.595 9 N -0.437 5.437 10 C -0.349 4.349 11 H 0.109 0.891 12 C 0.041 3.959 13 N -0.856 5.856 14 Si 0.919 3.081 15 H -0.266 1.266 16 H -0.282 1.282 17 H -0.277 1.277 18 C 0.232 3.768 19 C 0.260 3.740 20 N -0.483 5.483 21 C -0.134 4.134 22 C 0.089 3.911 23 H 0.061 0.939 24 C -0.141 4.141 25 O -0.387 6.387 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.276 0.724 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.814 -5.697 8.566 10.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.010 3.990 3 H 0.125 0.875 4 C -0.163 4.163 5 C -0.116 4.116 6 H 0.113 0.887 7 C 0.260 3.740 8 O -0.481 6.481 9 N -0.156 5.156 10 C -0.475 4.475 11 H 0.127 0.873 12 C -0.165 4.165 13 N -0.492 5.492 14 Si 0.745 3.255 15 H -0.190 1.190 16 H -0.209 1.209 17 H -0.203 1.203 18 C 0.105 3.895 19 C -0.058 4.058 20 N -0.164 5.164 21 C -0.173 4.173 22 C 0.031 3.969 23 H 0.079 0.921 24 C -0.199 4.199 25 O -0.307 6.307 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.337 -4.465 7.262 9.564 hybrid contribution 1.241 -0.905 -0.298 1.565 sum -3.095 -5.370 6.963 9.322 Atomic orbital electron populations 1.21746 0.94603 1.01656 1.01743 1.22645 0.93532 0.98919 0.83948 0.87477 1.21967 0.94415 1.00549 0.99322 1.21102 0.95486 0.95277 0.99737 0.88702 1.20184 0.81197 0.90522 0.82139 1.90416 1.57478 1.44844 1.55360 1.43698 1.10455 1.06224 1.55204 1.19697 1.03389 0.87851 1.36591 0.87335 1.25250 0.99453 0.97653 0.94174 1.69826 1.26680 1.25573 1.27133 0.86003 0.80743 0.80559 0.78229 1.18968 1.20853 1.20282 1.18451 1.00786 0.82879 0.87358 1.28923 0.90687 0.91472 0.94727 1.80814 1.11763 1.12667 1.11172 1.22104 1.02128 0.99213 0.93811 1.21992 0.81617 0.98907 0.94394 0.92078 1.21745 1.01119 1.00628 0.96363 1.87761 1.20651 1.78551 1.43732 0.92522 0.91610 0.92882 0.91868 0.91307 0.91324 0.89132 0.87168 0.89724 0.91257 0.92302 0.92351 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.56 37.16 0.36 -1.61 16 2 C 0.07 1.13 2.96 -26.68 -0.08 1.05 16 3 H 0.11 2.12 5.19 -51.93 -0.27 1.85 16 4 C -0.12 -2.10 4.72 -26.59 -0.13 -2.23 16 5 C -0.09 -1.72 2.18 -91.59 -0.20 -1.92 16 6 H 0.09 1.75 6.72 -51.93 -0.35 1.40 16 7 C 0.47 10.00 5.77 -10.98 -0.06 9.93 16 8 O -0.59 -13.58 12.65 5.55 0.07 -13.51 16 9 N -0.44 -9.67 2.59 -117.93 -0.31 -9.98 16 10 C -0.35 -7.78 8.66 -14.93 -0.13 -7.91 16 11 H 0.11 2.29 5.66 -52.49 -0.30 1.99 16 12 C 0.04 0.94 4.81 -17.47 -0.08 0.85 16 13 N -0.86 -20.92 9.21 55.50 0.51 -20.41 16 14 Si 0.92 17.82 29.62 -169.99 -5.04 12.78 16 15 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 16 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 17 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 18 C 0.23 4.95 5.19 -6.83 -0.04 4.91 16 19 C 0.26 6.27 12.97 -20.76 -0.27 6.00 16 20 N -0.48 -12.49 18.54 42.15 0.78 -11.71 16 21 C -0.13 -2.14 4.70 -26.60 -0.13 -2.27 16 22 C 0.09 1.42 3.02 -26.69 -0.08 1.34 16 23 H 0.06 1.10 7.14 -51.92 -0.37 0.73 16 24 C -0.14 -1.81 9.56 37.16 0.36 -1.46 16 25 O -0.39 -6.64 10.05 -35.23 -0.35 -7.00 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.28 6.56 8.31 -40.82 -0.34 6.22 16 32 H 0.09 1.76 7.42 -51.93 -0.39 1.37 16 33 H 0.11 2.27 6.90 -51.93 -0.36 1.91 16 34 H 0.08 1.36 7.34 -51.93 -0.38 0.98 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 306.05 15.07 4.61 4.61 Total: -1.00 -27.52 306.05 -5.55 -33.07 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -5.35 Total: 5.44 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -0.48 Total: 6.70 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.99 Total: -42.09 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.28 Total: -20.51 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.04 Total: 12.78 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.52 -5.55 -33.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354400198.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.737 kcal (2) G-P(sol) polarization free energy of solvation -27.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds