Wall clock time and date at job start Thu Apr 9 2020 13:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.49163 * 2 1 4 4 C 1.53091 * 109.47856 * 239.97244 * 2 1 3 5 5 C 1.53174 * 109.16422 * 182.41114 * 4 2 1 6 6 H 1.08996 * 109.54954 * 176.93520 * 5 4 2 7 7 C 1.50708 * 109.54217 * 297.11071 * 5 4 2 8 8 O 1.21293 * 119.99629 * 21.31278 * 7 5 4 9 9 N 1.34777 * 120.00259 * 201.31263 * 7 5 4 10 10 C 1.37094 * 119.99696 * 4.17342 * 9 7 5 11 11 H 1.07999 * 120.00340 * 345.69862 * 10 9 7 12 12 C 1.38954 * 119.99653 * 165.69209 * 10 9 7 13 13 N 1.31403 * 120.00279 * 334.28890 * 12 10 9 14 14 Si 1.86802 * 119.99869 * 154.28422 * 12 10 9 15 15 H 1.48505 * 109.47168 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47060 * 119.99898 * 14 12 10 17 17 H 1.48495 * 109.47392 * 240.00407 * 14 12 10 18 18 C 1.46498 * 119.99939 * 184.17683 * 9 7 5 19 19 C 1.47208 * 109.46912 * 267.88809 * 18 9 7 20 20 N 6.55372 * 128.04183 * 310.95281 * 2 1 3 21 21 C 1.53173 * 109.03843 * 56.97580 * 5 4 2 22 22 C 1.53089 * 109.16697 * 303.02335 * 21 5 4 23 23 H 1.09007 * 109.48829 * 297.62360 * 22 21 5 24 24 C 1.52996 * 109.48487 * 177.59271 * 22 21 5 25 25 O 1.42904 * 109.41637 * 57.60502 * 22 21 5 26 26 H 1.09004 * 109.47213 * 299.97005 * 1 2 3 27 27 H 1.08998 * 109.47490 * 59.97299 * 1 2 3 28 28 H 1.09006 * 109.47091 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.52103 * 302.31349 * 4 2 1 30 30 H 1.08995 * 109.52477 * 62.43944 * 4 2 1 31 31 H 0.97001 * 120.00168 * 179.97438 * 13 12 10 32 32 H 1.08995 * 109.47498 * 27.88448 * 18 9 7 33 33 H 1.08992 * 109.47032 * 147.89538 * 18 9 7 34 34 H 1.09004 * 109.52505 * 183.11687 * 21 5 4 35 35 H 1.08999 * 109.52212 * 62.92887 * 21 5 4 36 36 H 1.09004 * 109.47074 * 300.05543 * 24 22 21 37 37 H 1.09001 * 109.47307 * 180.02562 * 24 22 21 38 38 H 1.08992 * 109.47248 * 60.05972 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7222 -1.2496 5 6 3.5710 -0.7710 -1.2122 6 1 3.9391 -1.3314 -2.0715 7 6 4.1211 0.6316 -1.2519 8 8 3.4228 1.5664 -0.9209 9 7 5.3890 0.8470 -1.6551 10 6 6.1504 -0.1982 -2.1103 11 1 5.8316 -1.2150 -1.9352 12 6 7.3324 0.0509 -2.7971 13 7 7.4886 1.1818 -3.4477 14 14 8.6996 -1.2220 -2.7953 15 1 8.2780 -2.4002 -1.9955 16 1 8.9824 -1.6467 -4.1899 17 1 9.9250 -0.6316 -2.1994 18 6 5.9533 2.1981 -1.6069 19 6 5.7362 2.8669 -2.9002 20 7 5.5686 3.3830 -3.8982 21 6 4.0175 -1.4601 0.0808 22 6 3.4307 -0.7094 1.2790 23 1 3.8192 0.3090 1.2959 24 6 3.8227 -1.4266 2.5724 25 8 2.0066 -0.6742 1.1664 26 1 -0.3634 0.5134 0.8903 27 1 -0.3634 0.5142 -0.8897 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6442 -1.7375 -1.2709 30 1 1.7138 -0.1849 -2.1399 31 1 8.3139 1.3558 -3.9268 32 1 5.4648 2.7680 -0.8167 33 1 7.0225 2.1382 -1.4040 34 1 5.1058 -1.4498 0.1420 35 1 3.6612 -2.4902 0.0863 36 1 3.4345 -2.4450 2.5551 37 1 3.4045 -0.8922 3.4253 38 1 4.9090 -1.4532 2.6581 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354400198.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:08:49 Heat of formation + Delta-G solvation = -69.152463 kcal Electronic energy + Delta-G solvation = -21510.696287 eV Core-core repulsion = 18352.879499 eV Total energy + Delta-G solvation = -3157.816788 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.58136 -39.44711 -37.38481 -36.23863 -34.57464 -34.38702 -33.48400 -30.66351 -29.32925 -27.18309 -26.77613 -24.20893 -22.60914 -22.07809 -20.77056 -19.34575 -17.96749 -17.88154 -17.30984 -16.58847 -16.32329 -16.09895 -15.78287 -15.14579 -15.06214 -14.59098 -14.46633 -13.84630 -13.69935 -13.62860 -13.32227 -13.16696 -13.10348 -12.89940 -12.83104 -12.74356 -12.70020 -12.62248 -12.24912 -12.13527 -11.92487 -11.68414 -11.52280 -11.35129 -11.06044 -10.41192 -9.98127 -9.74313 -8.38314 -5.91881 1.41535 1.55099 1.66217 1.83429 2.06424 2.31411 2.42485 2.91812 3.01141 3.13107 3.70078 3.87712 3.94221 4.01558 4.11536 4.32178 4.41171 4.52140 4.64082 4.65454 4.77362 4.78243 4.82967 4.89829 4.90500 4.92723 5.08705 5.14427 5.21879 5.25637 5.32138 5.40511 5.44409 5.52826 5.76089 6.34135 6.51895 7.09280 7.11152 7.47815 7.89188 8.65157 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020159 B = 0.007462 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.638567 B = 3751.494143 C = 4559.152565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.064 3.936 3 H 0.075 0.925 4 C -0.122 4.122 5 C -0.096 4.096 6 H 0.093 0.907 7 C 0.465 3.535 8 O -0.613 6.613 9 N -0.449 5.449 10 C -0.352 4.352 11 H 0.122 0.878 12 C 0.002 3.998 13 N -0.891 5.891 14 Si 0.983 3.017 15 H -0.249 1.249 16 H -0.296 1.296 17 H -0.278 1.278 18 C 0.233 3.767 19 C 0.269 3.731 20 N -0.521 5.521 21 C -0.127 4.127 22 C 0.084 3.916 23 H 0.034 0.966 24 C -0.135 4.135 25 O -0.390 6.390 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.271 0.729 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 -7.909 9.826 13.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.007 3.993 3 H 0.093 0.907 4 C -0.160 4.160 5 C -0.117 4.117 6 H 0.111 0.889 7 C 0.256 3.744 8 O -0.500 6.500 9 N -0.168 5.168 10 C -0.478 4.478 11 H 0.140 0.860 12 C -0.200 4.200 13 N -0.529 5.529 14 Si 0.808 3.192 15 H -0.172 1.172 16 H -0.223 1.223 17 H -0.204 1.204 18 C 0.106 3.894 19 C -0.048 4.048 20 N -0.203 5.203 21 C -0.165 4.165 22 C 0.027 3.973 23 H 0.052 0.948 24 C -0.192 4.192 25 O -0.311 6.311 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.125 0.875 33 H 0.135 0.865 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.554 -6.692 8.544 11.770 hybrid contribution 1.239 -0.173 -0.673 1.420 sum -3.316 -6.866 7.871 10.959 Atomic orbital electron populations 1.21718 0.92327 1.02804 1.02385 1.22568 0.95385 0.97160 0.84146 0.90729 1.21970 0.93526 1.01711 0.98777 1.21167 0.96298 0.93226 1.00972 0.88910 1.20851 0.80757 0.91789 0.80976 1.90427 1.57895 1.45955 1.55762 1.43921 1.10993 1.06339 1.55545 1.20057 1.03308 0.88440 1.36036 0.86020 1.25999 1.01132 0.99180 0.93722 1.69913 1.26891 1.27555 1.28554 0.85017 0.77959 0.78861 0.77376 1.17179 1.22290 1.20360 1.18621 1.01414 0.83012 0.86388 1.29524 0.89573 0.90690 0.95013 1.80793 1.13147 1.13951 1.12384 1.22086 1.02136 0.99970 0.92293 1.22100 0.81088 0.97969 0.96190 0.94823 1.21729 1.02148 1.00811 0.94523 1.87770 1.21291 1.78260 1.43741 0.92043 0.90914 0.91405 0.89501 0.92425 0.91841 0.87523 0.86508 0.89692 0.89007 0.91057 0.91993 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.56 71.98 0.69 -2.86 16 2 C 0.06 2.12 2.96 30.62 0.09 2.22 16 3 H 0.08 2.98 5.19 -2.39 -0.01 2.97 16 4 C -0.12 -3.92 4.72 30.68 0.14 -3.78 16 5 C -0.10 -3.33 2.18 -11.42 -0.02 -3.36 16 6 H 0.09 3.27 6.72 -2.39 -0.02 3.25 16 7 C 0.47 19.65 5.77 87.66 0.51 20.15 16 8 O -0.61 -28.26 12.65 -3.07 -0.04 -28.30 16 9 N -0.45 -19.70 2.59 -645.41 -1.67 -21.37 16 10 C -0.35 -15.31 8.66 84.04 0.73 -14.59 16 11 H 0.12 4.88 5.66 -2.91 -0.02 4.86 16 12 C 0.00 0.11 4.81 84.93 0.41 0.52 16 13 N -0.89 -43.71 9.21 21.66 0.20 -43.51 16 14 Si 0.98 35.68 29.62 68.60 2.03 37.71 16 15 H -0.25 -8.26 7.11 99.48 0.71 -7.56 16 16 H -0.30 -11.35 7.11 99.48 0.71 -10.64 16 17 H -0.28 -10.05 7.11 99.48 0.71 -9.34 16 18 C 0.23 9.94 5.19 84.58 0.44 10.38 16 19 C 0.27 13.18 12.97 89.44 1.16 14.34 16 20 N -0.52 -27.43 18.54 20.01 0.37 -27.06 16 21 C -0.13 -3.74 4.70 30.68 0.14 -3.59 16 22 C 0.08 2.55 3.02 30.62 0.09 2.65 16 23 H 0.03 1.20 7.14 -2.38 -0.02 1.18 16 24 C -0.14 -3.09 9.56 71.98 0.69 -2.40 16 25 O -0.39 -12.70 10.05 -148.98 -1.50 -14.19 16 26 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 32 H 0.11 4.15 7.42 -2.39 -0.02 4.13 16 33 H 0.12 4.82 6.90 -2.39 -0.02 4.81 16 34 H 0.08 2.51 7.34 -2.38 -0.02 2.49 16 35 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -58.27 306.05 5.53 -52.75 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 1.06 Total: 24.29 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 5.07 Total: 19.69 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -1.10 Total: -91.94 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -1.54 Total: -42.50 kcal Atomic # 14 Polarization: 35.68 SS G_CDS: 2.03 Total: 37.71 kcal Total: -58.27 5.53 -52.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354400198.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.404 kcal (2) G-P(sol) polarization free energy of solvation -58.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds