Wall clock time and date at job start Thu Apr 9 2020 13:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.48518 * 2 1 4 4 C 1.53097 * 109.48354 * 239.97306 * 2 1 3 5 5 C 1.53174 * 109.16419 * 297.63187 * 4 2 1 6 6 C 1.50704 * 109.54156 * 183.14982 * 5 4 2 7 7 O 1.21288 * 119.99949 * 23.02350 * 6 5 4 8 8 N 1.34770 * 119.99886 * 203.02431 * 6 5 4 9 9 C 1.37105 * 120.00042 * 4.18640 * 8 6 5 10 10 H 1.08003 * 119.99445 * 323.07635 * 9 8 6 11 11 C 1.38945 * 120.00280 * 143.08339 * 9 8 6 12 12 N 1.31410 * 120.00436 * 155.49002 * 11 9 8 13 13 Si 1.86803 * 119.99755 * 335.48802 * 11 9 8 14 14 H 1.48508 * 109.47060 * 89.71122 * 13 11 9 15 15 H 1.48498 * 109.47264 * 209.70808 * 13 11 9 16 16 H 1.48497 * 109.47282 * 329.71536 * 13 11 9 17 17 C 1.46501 * 120.00001 * 184.18621 * 8 6 5 18 18 C 1.47200 * 109.47306 * 84.01042 * 17 8 6 19 19 N 7.48131 * 108.75550 * 204.90121 * 2 1 3 20 20 C 1.53175 * 109.03529 * 303.01199 * 5 4 2 21 21 C 1.53095 * 109.16093 * 56.98682 * 20 5 4 22 22 H 1.08995 * 109.48536 * 62.36762 * 21 20 5 23 23 C 1.53002 * 109.48055 * 182.39739 * 21 20 5 24 24 O 1.42904 * 109.41537 * 302.38569 * 21 20 5 25 25 H 1.09005 * 109.47233 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46785 * 60.02363 * 1 2 3 27 27 H 1.08999 * 109.47498 * 300.02514 * 1 2 3 28 28 H 1.09004 * 109.51532 * 57.53656 * 4 2 1 29 29 H 1.08997 * 109.52224 * 177.65818 * 4 2 1 30 30 H 1.08998 * 109.54547 * 62.88328 * 5 4 2 31 31 H 0.96996 * 119.99863 * 179.97438 * 12 11 9 32 32 H 1.09006 * 109.46706 * 204.00951 * 17 8 6 33 33 H 1.08996 * 109.47298 * 324.00658 * 17 8 6 34 34 H 1.08995 * 109.52568 * 176.88654 * 20 5 4 35 35 H 1.09000 * 109.52549 * 297.08225 * 20 5 4 36 36 H 1.09008 * 109.47409 * 59.99639 * 23 21 20 37 37 H 1.09002 * 109.47438 * 179.97438 * 23 21 20 38 38 H 1.08997 * 109.46917 * 299.99445 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 1.5757 -2.1813 -1.2124 6 6 2.1382 -2.9200 -2.3994 7 8 3.1362 -2.5086 -2.9524 8 7 1.5322 -4.0377 -2.8464 9 6 0.3571 -4.4552 -2.2766 10 1 0.2018 -4.3406 -1.2139 11 6 -0.6337 -5.0257 -3.0661 12 7 -1.5134 -5.8411 -2.5293 13 14 -0.7153 -4.6335 -4.8906 14 1 0.1099 -5.6113 -5.6445 15 1 -2.1245 -4.7154 -5.3520 16 1 -0.1962 -3.2623 -5.1259 17 6 2.1292 -4.8067 -3.9412 18 6 3.1486 -5.7204 -3.4002 19 7 3.9354 -6.4255 -2.9828 20 6 2.0764 -2.8323 0.0806 21 6 1.5644 -2.0287 1.2788 22 1 0.4749 -2.0551 1.2955 23 6 2.1095 -2.6378 2.5722 24 8 2.0065 -0.6744 1.1664 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5135 -0.8902 27 1 -0.3634 0.5142 0.8897 28 1 1.6421 -0.2355 -2.1398 29 1 3.1297 -0.6864 -1.2715 30 1 0.4867 -2.2178 -1.2411 31 1 -2.2052 -6.2390 -3.0805 32 1 1.3537 -5.3845 -4.4443 33 1 2.5936 -4.1246 -4.6532 34 1 1.7036 -3.8547 0.1417 35 1 3.1664 -2.8400 0.0862 36 1 3.1992 -2.6108 2.5555 37 1 1.7453 -2.0653 3.4252 38 1 1.7729 -3.6710 2.6573 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354400217.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:08:57 Heat of formation + Delta-G solvation = -53.351776 kcal Electronic energy + Delta-G solvation = -21335.680026 eV Core-core repulsion = 18178.548408 eV Total energy + Delta-G solvation = -3157.131619 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -40.11918 -38.58677 -36.08056 -34.86451 -33.25790 -33.08773 -32.17267 -29.47923 -27.93923 -26.33325 -25.18203 -23.31209 -22.14822 -19.48302 -18.87599 -18.33562 -16.92396 -16.20548 -15.97755 -15.54605 -15.45422 -14.68459 -14.27840 -14.00651 -13.81629 -13.31842 -13.13315 -12.79305 -12.57676 -12.51889 -12.34605 -12.26264 -11.91662 -11.79388 -11.69979 -11.46667 -11.39325 -11.08806 -10.91237 -10.63310 -10.43290 -10.31325 -10.11821 -9.80819 -9.50298 -9.26474 -8.65882 -8.18085 -6.69569 -4.30310 2.84679 3.06306 3.08369 3.13771 3.38564 3.46896 3.92260 3.98387 4.29834 4.57067 4.86647 5.01008 5.12264 5.21938 5.26422 5.36629 5.48947 5.64102 5.67095 5.70531 5.76057 5.80643 5.87302 5.94465 6.03727 6.18413 6.21478 6.24531 6.32276 6.37403 6.46905 6.55886 6.77686 7.01778 7.53015 7.81737 8.02731 8.12176 8.71086 9.06489 9.38238 10.40287 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.018312 B = 0.007433 C = 0.006771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.663582 B = 3766.224456 C = 4134.472895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.090 3.910 3 H 0.098 0.902 4 C -0.131 4.131 5 C -0.091 4.091 6 C 0.495 3.505 7 O -0.585 6.585 8 N -0.461 5.461 9 C -0.356 4.356 10 H 0.111 0.889 11 C 0.071 3.929 12 N -0.844 5.844 13 Si 0.859 3.141 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.254 1.254 17 C 0.183 3.817 18 C 0.216 3.784 19 N -0.451 5.451 20 C -0.134 4.134 21 C 0.086 3.914 22 H 0.064 0.936 23 C -0.143 4.143 24 O -0.379 6.379 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.279 0.721 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.241 8.171 2.954 8.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.032 3.968 3 H 0.116 0.884 4 C -0.169 4.169 5 C -0.112 4.112 6 C 0.285 3.715 7 O -0.468 6.468 8 N -0.183 5.183 9 C -0.482 4.482 10 H 0.128 0.872 11 C -0.138 4.138 12 N -0.477 5.477 13 Si 0.684 3.316 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.178 1.178 17 C 0.057 3.943 18 C -0.102 4.102 19 N -0.130 5.130 20 C -0.172 4.172 21 C 0.029 3.971 22 H 0.082 0.918 23 C -0.200 4.200 24 O -0.299 6.299 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.124 0.876 31 H 0.089 0.911 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.340 7.277 3.423 8.153 hybrid contribution -0.867 0.014 -1.391 1.639 sum 0.473 7.291 2.032 7.584 Atomic orbital electron populations 1.22484 0.96501 1.03360 1.02230 1.22149 0.93402 0.95986 0.85240 0.88395 1.22042 1.02505 0.94609 0.97710 1.21098 1.02850 0.94141 0.93134 1.20490 0.84680 0.80166 0.86122 1.90566 1.28006 1.67951 1.60320 1.43670 1.21780 1.20045 1.32793 1.19086 0.90603 1.43371 0.95183 0.87186 1.25336 0.95399 0.94259 0.98837 1.69787 1.16624 1.23315 1.37991 0.87272 0.78260 0.80716 0.85303 1.19482 1.20658 1.17784 1.19389 0.91659 0.91701 0.91560 1.29927 0.93425 0.93354 0.93540 1.81010 1.12058 1.11475 1.08439 1.22098 1.01565 1.00433 0.93144 1.22070 0.98253 0.81944 0.94838 0.91791 1.21751 1.01867 1.00449 0.95946 1.87917 1.74007 1.24746 1.43205 0.91212 0.91516 0.92289 0.90967 0.90406 0.87628 0.91086 0.86873 0.87020 0.89829 0.91441 0.92094 0.92185 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.35 8.65 37.15 0.32 -2.03 16 2 C 0.09 1.24 3.91 -26.68 -0.10 1.13 16 3 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 4 C -0.13 -2.09 4.49 -26.59 -0.12 -2.21 16 5 C -0.09 -1.64 1.47 -91.59 -0.13 -1.78 16 6 C 0.50 10.54 6.70 -10.99 -0.07 10.47 16 7 O -0.59 -13.53 15.67 5.55 0.09 -13.44 16 8 N -0.46 -10.03 2.16 -117.93 -0.25 -10.29 16 9 C -0.36 -8.24 8.66 -14.93 -0.13 -8.37 16 10 H 0.11 2.65 6.16 -52.48 -0.32 2.32 16 11 C 0.07 1.67 5.23 -17.47 -0.09 1.58 16 12 N -0.84 -21.15 13.96 55.50 0.77 -20.37 16 13 Si 0.86 17.55 25.40 -169.99 -4.32 13.24 16 14 H -0.27 -5.14 6.40 56.52 0.36 -4.78 16 15 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 16 H -0.25 -5.17 7.11 56.52 0.40 -4.77 16 17 C 0.18 3.69 4.50 -6.83 -0.03 3.66 16 18 C 0.22 4.60 15.70 -20.76 -0.33 4.28 16 19 N -0.45 -10.09 18.54 42.15 0.78 -9.31 16 20 C -0.13 -2.29 4.57 -26.59 -0.12 -2.41 16 21 C 0.09 1.28 2.94 -26.68 -0.08 1.20 16 22 H 0.06 0.92 6.34 -51.93 -0.33 0.59 16 23 C -0.14 -1.83 9.56 37.16 0.36 -1.47 16 24 O -0.38 -5.80 10.24 -35.23 -0.36 -6.16 16 25 H 0.07 0.95 4.97 -51.93 -0.26 0.69 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.36 7.78 -51.93 -0.40 0.95 16 30 H 0.11 1.92 5.50 -51.93 -0.29 1.63 16 31 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 32 H 0.11 2.23 3.52 -51.93 -0.18 2.04 16 33 H 0.11 2.04 7.55 -51.93 -0.39 1.65 16 34 H 0.08 1.51 7.06 -51.93 -0.37 1.14 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 305.28 15.07 4.60 4.60 Total: -1.00 -27.22 305.28 -4.32 -31.54 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.10 Total: 6.15 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -0.53 Total: 4.05 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 1.30 Total: -39.97 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.27 Total: -19.60 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -4.32 Total: 13.24 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.22 -4.32 -31.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354400217.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.812 kcal (2) G-P(sol) polarization free energy of solvation -27.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds