Wall clock time and date at job start Thu Apr 9 2020 13:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.48518 * 2 1 4 4 C 1.53097 * 109.48354 * 239.97306 * 2 1 3 5 5 C 1.53174 * 109.16419 * 297.63187 * 4 2 1 6 6 C 1.50704 * 109.54156 * 183.14982 * 5 4 2 7 7 O 1.21288 * 119.99949 * 23.02350 * 6 5 4 8 8 N 1.34770 * 119.99886 * 203.02431 * 6 5 4 9 9 C 1.37105 * 120.00042 * 4.18640 * 8 6 5 10 10 H 1.08003 * 119.99445 * 323.07635 * 9 8 6 11 11 C 1.38945 * 120.00280 * 143.08339 * 9 8 6 12 12 N 1.31410 * 120.00436 * 155.49002 * 11 9 8 13 13 Si 1.86803 * 119.99755 * 335.48802 * 11 9 8 14 14 H 1.48508 * 109.47060 * 89.71122 * 13 11 9 15 15 H 1.48498 * 109.47264 * 209.70808 * 13 11 9 16 16 H 1.48497 * 109.47282 * 329.71536 * 13 11 9 17 17 C 1.46501 * 120.00001 * 184.18621 * 8 6 5 18 18 C 1.47200 * 109.47306 * 84.01042 * 17 8 6 19 19 N 7.48131 * 108.75550 * 204.90121 * 2 1 3 20 20 C 1.53175 * 109.03529 * 303.01199 * 5 4 2 21 21 C 1.53095 * 109.16093 * 56.98682 * 20 5 4 22 22 H 1.08995 * 109.48536 * 62.36762 * 21 20 5 23 23 C 1.53002 * 109.48055 * 182.39739 * 21 20 5 24 24 O 1.42904 * 109.41537 * 302.38569 * 21 20 5 25 25 H 1.09005 * 109.47233 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46785 * 60.02363 * 1 2 3 27 27 H 1.08999 * 109.47498 * 300.02514 * 1 2 3 28 28 H 1.09004 * 109.51532 * 57.53656 * 4 2 1 29 29 H 1.08997 * 109.52224 * 177.65818 * 4 2 1 30 30 H 1.08998 * 109.54547 * 62.88328 * 5 4 2 31 31 H 0.96996 * 119.99863 * 179.97438 * 12 11 9 32 32 H 1.09006 * 109.46706 * 204.00951 * 17 8 6 33 33 H 1.08996 * 109.47298 * 324.00658 * 17 8 6 34 34 H 1.08995 * 109.52568 * 176.88654 * 20 5 4 35 35 H 1.09000 * 109.52549 * 297.08225 * 20 5 4 36 36 H 1.09008 * 109.47409 * 59.99639 * 23 21 20 37 37 H 1.09002 * 109.47438 * 179.97438 * 23 21 20 38 38 H 1.08997 * 109.46917 * 299.99445 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 1.5757 -2.1813 -1.2124 6 6 2.1382 -2.9200 -2.3994 7 8 3.1362 -2.5086 -2.9524 8 7 1.5322 -4.0377 -2.8464 9 6 0.3571 -4.4552 -2.2766 10 1 0.2018 -4.3406 -1.2139 11 6 -0.6337 -5.0257 -3.0661 12 7 -1.5134 -5.8411 -2.5293 13 14 -0.7153 -4.6335 -4.8906 14 1 0.1099 -5.6113 -5.6445 15 1 -2.1245 -4.7154 -5.3520 16 1 -0.1962 -3.2623 -5.1259 17 6 2.1292 -4.8067 -3.9412 18 6 3.1486 -5.7204 -3.4002 19 7 3.9354 -6.4255 -2.9828 20 6 2.0764 -2.8323 0.0806 21 6 1.5644 -2.0287 1.2788 22 1 0.4749 -2.0551 1.2955 23 6 2.1095 -2.6378 2.5722 24 8 2.0065 -0.6744 1.1664 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5135 -0.8902 27 1 -0.3634 0.5142 0.8897 28 1 1.6421 -0.2355 -2.1398 29 1 3.1297 -0.6864 -1.2715 30 1 0.4867 -2.2178 -1.2411 31 1 -2.2052 -6.2390 -3.0805 32 1 1.3537 -5.3845 -4.4443 33 1 2.5936 -4.1246 -4.6532 34 1 1.7036 -3.8547 0.1417 35 1 3.1664 -2.8400 0.0862 36 1 3.1992 -2.6108 2.5555 37 1 1.7453 -2.0653 3.4252 38 1 1.7729 -3.6710 2.6573 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354400217.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:08:55 Heat of formation + Delta-G solvation = -69.240436 kcal Electronic energy + Delta-G solvation = -21336.369010 eV Core-core repulsion = 18178.548408 eV Total energy + Delta-G solvation = -3157.820603 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.57600 -40.05649 -37.80688 -36.62996 -34.62394 -34.26080 -33.97940 -30.71137 -29.47629 -27.53347 -26.94784 -24.70421 -23.36320 -21.01010 -20.42116 -19.90307 -18.51779 -17.82945 -17.31953 -17.10429 -16.78310 -16.12394 -15.78298 -15.52118 -15.31946 -14.81217 -14.60180 -14.30004 -14.27126 -13.92255 -13.74797 -13.60440 -13.45854 -13.12416 -12.90215 -12.85110 -12.71699 -12.59190 -12.23279 -12.14580 -11.85252 -11.79941 -11.61368 -11.26041 -10.99206 -10.67076 -10.20176 -9.96575 -8.50631 -6.15119 1.22971 1.37503 1.40477 1.52380 1.68124 1.78715 2.21448 2.64127 2.83086 2.88870 3.16624 3.75499 3.84771 3.89554 3.98344 4.11467 4.20484 4.27756 4.35763 4.46083 4.50751 4.55405 4.64224 4.72396 4.83507 4.89430 5.04136 5.07125 5.15705 5.19223 5.24427 5.29790 5.33855 5.48838 6.04345 6.18952 6.37035 6.41081 6.91753 7.28180 7.63110 8.62120 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.018312 B = 0.007433 C = 0.006771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.663582 B = 3766.224456 C = 4134.472895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.090 3.910 3 H 0.122 0.878 4 C -0.125 4.125 5 C -0.090 4.090 6 C 0.490 3.510 7 O -0.604 6.604 8 N -0.468 5.468 9 C -0.354 4.354 10 H 0.092 0.908 11 C 0.036 3.964 12 N -0.883 5.883 13 Si 0.905 3.095 14 H -0.244 1.244 15 H -0.282 1.282 16 H -0.250 1.250 17 C 0.179 3.821 18 C 0.225 3.775 19 N -0.473 5.473 20 C -0.128 4.128 21 C 0.090 3.910 22 H 0.070 0.930 23 C -0.141 4.141 24 O -0.387 6.387 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.282 0.718 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.536 9.406 2.545 9.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.033 3.967 3 H 0.140 0.860 4 C -0.164 4.164 5 C -0.111 4.111 6 C 0.281 3.719 7 O -0.488 6.488 8 N -0.189 5.189 9 C -0.481 4.481 10 H 0.109 0.891 11 C -0.170 4.170 12 N -0.518 5.518 13 Si 0.728 3.272 14 H -0.170 1.170 15 H -0.208 1.208 16 H -0.174 1.174 17 C 0.053 3.947 18 C -0.093 4.093 19 N -0.153 5.153 20 C -0.166 4.166 21 C 0.032 3.968 22 H 0.088 0.912 23 C -0.198 4.198 24 O -0.307 6.307 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.092 0.908 32 H 0.139 0.861 33 H 0.153 0.847 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.056 8.511 3.014 9.090 hybrid contribution -0.748 -0.365 -1.232 1.487 sum 0.308 8.146 1.782 8.344 Atomic orbital electron populations 1.22446 0.95280 1.02782 1.03638 1.22301 0.94364 0.96515 0.83545 0.86001 1.22027 1.01429 0.93420 0.99484 1.21141 1.02556 0.95240 0.92149 1.21075 0.84267 0.80035 0.86505 1.90546 1.28751 1.68467 1.61071 1.43746 1.21538 1.20414 1.33252 1.18955 0.91450 1.43085 0.94613 0.89081 1.25865 0.94922 0.93732 1.02502 1.69855 1.17663 1.24603 1.39703 0.86508 0.78520 0.81161 0.80994 1.16980 1.20831 1.17365 1.19638 0.91682 0.91965 0.91411 1.30166 0.93172 0.92994 0.92997 1.81012 1.12921 1.12284 1.09053 1.22033 1.00448 1.00030 0.94093 1.22080 0.98564 0.81650 0.94485 0.91205 1.21758 1.01640 1.00935 0.95454 1.87919 1.74369 1.24675 1.43688 0.92728 0.90237 0.90801 0.90272 0.92094 0.87787 0.90778 0.86060 0.84749 0.91474 0.92933 0.92419 0.90497 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.17 8.65 71.98 0.62 -3.55 16 2 C 0.09 2.29 3.91 30.62 0.12 2.41 16 3 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 4 C -0.13 -3.88 4.49 30.68 0.14 -3.74 16 5 C -0.09 -3.22 1.47 -11.42 -0.02 -3.24 16 6 C 0.49 20.67 6.70 87.66 0.59 21.26 16 7 O -0.60 -27.55 15.67 -3.05 -0.05 -27.59 16 8 N -0.47 -20.07 2.16 -645.41 -1.39 -21.46 16 9 C -0.35 -16.40 8.66 84.04 0.73 -15.67 16 10 H 0.09 4.49 6.16 -2.91 -0.02 4.47 16 11 C 0.04 1.68 5.23 84.93 0.44 2.13 16 12 N -0.88 -44.35 13.96 21.66 0.30 -44.04 16 13 Si 0.90 34.67 25.40 68.60 1.74 36.41 16 14 H -0.24 -8.42 6.40 99.48 0.64 -7.78 16 15 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 16 H -0.25 -9.40 7.11 99.48 0.71 -8.70 16 17 C 0.18 6.94 4.50 84.57 0.38 7.32 16 18 C 0.23 9.40 15.70 89.44 1.40 10.80 16 19 N -0.47 -20.97 18.54 20.01 0.37 -20.60 16 20 C -0.13 -4.40 4.57 30.68 0.14 -4.26 16 21 C 0.09 2.57 2.94 30.63 0.09 2.66 16 22 H 0.07 1.94 6.34 -2.39 -0.02 1.92 16 23 C -0.14 -3.43 9.56 71.98 0.69 -2.74 16 24 O -0.39 -11.19 10.24 -148.98 -1.53 -12.71 16 25 H 0.05 1.40 4.97 -2.38 -0.01 1.39 16 26 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.06 2.09 7.78 -2.39 -0.02 2.07 16 30 H 0.10 3.77 5.50 -2.39 -0.01 3.76 16 31 H 0.28 13.21 8.31 -92.71 -0.77 12.44 16 32 H 0.12 4.51 3.52 -2.38 -0.01 4.50 16 33 H 0.13 4.61 7.55 -2.39 -0.02 4.60 16 34 H 0.07 2.50 7.06 -2.39 -0.02 2.48 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -56.91 305.28 5.78 -51.13 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 1.01 Total: 25.50 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 5.33 Total: 13.37 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -0.72 Total: -86.11 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -1.57 Total: -40.31 kcal Atomic # 14 Polarization: 34.67 SS G_CDS: 1.74 Total: 36.41 kcal Total: -56.91 5.78 -51.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354400217.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.108 kcal (2) G-P(sol) polarization free energy of solvation -56.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds