Wall clock time and date at job start Thu Apr 9 2020 13:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47841 * 2 1 4 4 C 1.53090 * 109.48342 * 120.02574 * 2 1 3 5 5 C 1.53176 * 109.16211 * 62.38592 * 4 2 1 6 6 C 1.50698 * 109.54389 * 176.85193 * 5 4 2 7 7 O 1.21294 * 120.00078 * 354.15308 * 6 5 4 8 8 N 1.34781 * 120.00073 * 174.16133 * 6 5 4 9 9 C 1.37095 * 120.00076 * 4.42160 * 8 6 5 10 10 H 1.07998 * 119.99824 * 355.94030 * 9 8 6 11 11 C 1.38945 * 119.99955 * 175.94002 * 9 8 6 12 12 N 1.31410 * 120.00046 * 334.08064 * 11 9 8 13 13 Si 1.86801 * 120.00150 * 154.08530 * 11 9 8 14 14 H 1.48494 * 109.46923 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47570 * 119.99770 * 13 11 9 16 16 H 1.48506 * 109.46943 * 239.99581 * 13 11 9 17 17 C 1.46501 * 119.99622 * 184.42754 * 8 6 5 18 18 C 1.47208 * 109.47127 * 265.73816 * 17 8 6 19 19 N 7.61113 * 112.06915 * 152.22856 * 2 1 3 20 20 C 1.53175 * 109.11217 * 56.93434 * 5 4 2 21 21 C 1.53101 * 109.16131 * 303.15568 * 20 5 4 22 22 H 1.08999 * 109.40622 * 297.49297 * 21 20 5 23 23 C 1.52997 * 109.49484 * 177.50771 * 21 20 5 24 24 O 1.42904 * 109.48951 * 239.97480 * 2 1 3 25 25 H 1.08998 * 109.47243 * 299.97030 * 1 2 3 26 26 H 1.08998 * 109.47361 * 59.97733 * 1 2 3 27 27 H 1.08998 * 109.46785 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.52014 * 302.48185 * 4 2 1 29 29 H 1.08996 * 109.57346 * 182.32254 * 4 2 1 30 30 H 1.09002 * 109.54572 * 297.02544 * 5 4 2 31 31 H 0.97002 * 120.00314 * 180.02562 * 12 11 9 32 32 H 1.09007 * 109.46768 * 145.74426 * 17 8 6 33 33 H 1.09002 * 109.47600 * 25.74296 * 17 8 6 34 34 H 1.09002 * 109.52160 * 62.97052 * 20 5 4 35 35 H 1.08999 * 109.52661 * 183.15790 * 20 5 4 36 36 H 1.09001 * 109.46824 * 299.95951 * 23 21 20 37 37 H 1.08991 * 109.47529 * 59.95783 * 23 21 20 38 38 H 1.09006 * 109.46838 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 1.5760 -2.1813 1.2121 6 6 2.1384 -2.9201 2.3991 7 8 2.9261 -2.3691 3.1388 8 7 1.7664 -4.1932 2.6386 9 6 0.9478 -4.8461 1.7537 10 1 0.5481 -4.3206 0.8991 11 6 0.6325 -6.1841 1.9563 12 7 1.4519 -6.9571 2.6331 13 14 -0.9562 -6.8841 1.2667 14 1 -1.6980 -5.8157 0.5503 15 1 -0.6427 -7.9875 0.3236 16 1 -1.7910 -7.4057 2.3786 17 6 2.2366 -4.8791 3.8447 18 6 3.4519 -5.6478 3.5297 19 7 4.3897 -6.2410 3.2865 20 6 2.0751 -2.8335 -0.0809 21 6 1.5650 -2.0285 -1.2792 22 1 0.4755 -2.0551 -1.2960 23 6 2.1103 -2.6371 -2.5726 24 8 2.0068 -0.6741 -1.1664 25 1 -0.3633 0.5134 0.8902 26 1 -0.3634 0.5142 -0.8897 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6419 -0.2357 2.1398 29 1 3.1298 -0.6871 1.2721 30 1 0.4871 -2.2182 1.2422 31 1 1.2319 -7.8912 2.7743 32 1 1.4612 -5.5562 4.2032 33 1 2.4620 -4.1433 4.6167 34 1 3.1651 -2.8424 -0.0872 35 1 1.7012 -3.8556 -0.1413 36 1 3.1998 -2.6107 -2.5554 37 1 1.7733 -3.6701 -2.6584 38 1 1.7465 -2.0639 -3.4254 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354400230.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:09:04 Heat of formation + Delta-G solvation = -50.865220 kcal Electronic energy + Delta-G solvation = -21431.816446 eV Core-core repulsion = 18274.792652 eV Total energy + Delta-G solvation = -3157.023794 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.04654 -38.36729 -35.67717 -34.41630 -33.18835 -33.05628 -31.71380 -29.42488 -27.62951 -26.21080 -25.12355 -23.17568 -22.10216 -19.49639 -18.87627 -17.93740 -16.53060 -16.27158 -15.98686 -15.37580 -14.76059 -14.53213 -14.48654 -13.93373 -13.55074 -12.97876 -12.76646 -12.64849 -12.53965 -12.41470 -11.99998 -11.83186 -11.70415 -11.52919 -11.39660 -11.30661 -11.12010 -10.92236 -10.67476 -10.54735 -10.53242 -10.22137 -10.08323 -9.71821 -9.33560 -9.27762 -8.48362 -8.23407 -6.65363 -4.08425 2.97312 3.11876 3.14731 3.55130 3.78772 4.01594 4.03943 4.26109 4.72261 4.79473 5.00932 5.13809 5.25704 5.34429 5.38357 5.49198 5.56363 5.66843 5.69553 5.79721 5.83887 5.96460 6.03466 6.12112 6.23584 6.26068 6.31939 6.38788 6.51330 6.55904 6.66746 6.70904 6.81927 7.25055 7.38516 7.56479 8.10291 8.83980 8.97090 9.22034 9.62725 10.38674 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.017415 B = 0.007839 C = 0.006534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.392225 B = 3570.807283 C = 4284.563559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.088 3.912 3 H 0.097 0.903 4 C -0.126 4.126 5 C -0.085 4.085 6 C 0.467 3.533 7 O -0.599 6.599 8 N -0.441 5.441 9 C -0.348 4.348 10 H 0.115 0.885 11 C 0.041 3.959 12 N -0.860 5.860 13 Si 0.916 3.084 14 H -0.266 1.266 15 H -0.282 1.282 16 H -0.277 1.277 17 C 0.228 3.772 18 C 0.262 3.738 19 N -0.488 5.488 20 C -0.148 4.148 21 C 0.085 3.915 22 H 0.059 0.941 23 C -0.143 4.143 24 O -0.380 6.380 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.275 0.725 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.351 8.182 -4.785 11.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.031 3.969 3 H 0.115 0.885 4 C -0.164 4.164 5 C -0.107 4.107 6 C 0.256 3.744 7 O -0.485 6.485 8 N -0.160 5.160 9 C -0.474 4.474 10 H 0.133 0.867 11 C -0.165 4.165 12 N -0.497 5.497 13 Si 0.742 3.258 14 H -0.190 1.190 15 H -0.208 1.208 16 H -0.203 1.203 17 C 0.101 3.899 18 C -0.056 4.056 19 N -0.169 5.169 20 C -0.185 4.185 21 C 0.027 3.973 22 H 0.077 0.923 23 C -0.200 4.200 24 O -0.300 6.300 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.141 0.859 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.464 7.427 -4.842 9.927 hybrid contribution -1.381 -0.650 -0.069 1.528 sum -5.845 6.777 -4.911 10.208 Atomic orbital electron populations 1.22470 0.96777 1.02991 1.02168 1.22163 0.93191 0.96084 0.85493 0.88482 1.21976 1.02451 0.94665 0.97351 1.21008 1.01148 0.94368 0.94141 1.20087 0.83974 0.82891 0.87417 1.90557 1.37792 1.69010 1.51099 1.43720 1.42686 1.09884 1.19712 1.19844 1.24692 0.94469 1.08391 0.86725 1.25203 0.98292 0.95716 0.97310 1.69932 1.32872 1.06736 1.40141 0.86038 0.81886 0.79043 0.78799 1.19030 1.20829 1.20265 1.18707 0.89264 0.93519 0.88373 1.29128 0.92471 0.91712 0.92261 1.80836 1.15309 1.11905 1.08813 1.22407 1.01972 1.01574 0.92593 1.22115 0.97877 0.81984 0.95293 0.92270 1.21745 1.02015 1.00398 0.95845 1.87916 1.74023 1.24887 1.43147 0.91586 0.92326 0.91546 0.90903 0.90633 0.89272 0.91367 0.85890 0.89408 0.91546 0.87802 0.92026 0.90988 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.22 8.65 37.16 0.32 -1.90 16 2 C 0.09 1.22 3.91 -26.68 -0.10 1.11 16 3 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.13 -2.05 4.29 -26.59 -0.11 -2.17 16 5 C -0.09 -1.54 1.46 -91.59 -0.13 -1.67 16 6 C 0.47 10.26 7.00 -10.98 -0.08 10.18 16 7 O -0.60 -14.60 15.49 5.55 0.09 -14.51 16 8 N -0.44 -9.92 2.59 -117.93 -0.31 -10.22 16 9 C -0.35 -7.71 8.14 -14.94 -0.12 -7.83 16 10 H 0.12 2.37 4.80 -52.49 -0.25 2.12 16 11 C 0.04 0.91 4.95 -17.47 -0.09 0.83 16 12 N -0.86 -20.59 8.94 55.50 0.50 -20.10 16 13 Si 0.92 17.63 29.62 -169.99 -5.04 12.59 16 14 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 15 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 16 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 17 C 0.23 4.99 5.23 -6.83 -0.04 4.96 16 18 C 0.26 6.40 13.42 -20.76 -0.28 6.12 16 19 N -0.49 -12.67 18.54 42.15 0.78 -11.89 16 20 C -0.15 -2.58 4.28 -26.59 -0.11 -2.69 16 21 C 0.08 1.26 2.93 -26.68 -0.08 1.18 16 22 H 0.06 0.82 6.34 -51.93 -0.33 0.49 16 23 C -0.14 -1.87 9.57 37.16 0.36 -1.52 16 24 O -0.38 -5.90 10.24 -35.23 -0.36 -6.26 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.83 4.98 -51.93 -0.26 0.57 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.07 1.37 7.94 -51.93 -0.41 0.96 16 30 H 0.09 1.51 6.20 -51.93 -0.32 1.19 16 31 H 0.28 6.39 8.31 -40.82 -0.34 6.05 16 32 H 0.12 2.63 6.32 -51.92 -0.33 2.30 16 33 H 0.09 1.78 7.36 -51.93 -0.38 1.40 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.10 1.93 5.23 -51.93 -0.27 1.66 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 303.21 15.07 4.57 4.57 Total: -1.00 -27.96 303.21 -5.31 -33.27 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.07 Total: 5.94 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -0.47 Total: 6.61 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.97 Total: -42.20 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.27 Total: -20.77 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.04 Total: 12.59 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.96 -5.31 -33.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354400230.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.595 kcal (2) G-P(sol) polarization free energy of solvation -27.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds