Wall clock time and date at job start Thu Apr 9 2020 13:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47841 * 2 1 4 4 C 1.53090 * 109.48342 * 120.02574 * 2 1 3 5 5 C 1.53176 * 109.16211 * 62.38592 * 4 2 1 6 6 C 1.50698 * 109.54389 * 176.85193 * 5 4 2 7 7 O 1.21294 * 120.00078 * 354.15308 * 6 5 4 8 8 N 1.34781 * 120.00073 * 174.16133 * 6 5 4 9 9 C 1.37095 * 120.00076 * 4.42160 * 8 6 5 10 10 H 1.07998 * 119.99824 * 355.94030 * 9 8 6 11 11 C 1.38945 * 119.99955 * 175.94002 * 9 8 6 12 12 N 1.31410 * 120.00046 * 334.08064 * 11 9 8 13 13 Si 1.86801 * 120.00150 * 154.08530 * 11 9 8 14 14 H 1.48494 * 109.46923 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47570 * 119.99770 * 13 11 9 16 16 H 1.48506 * 109.46943 * 239.99581 * 13 11 9 17 17 C 1.46501 * 119.99622 * 184.42754 * 8 6 5 18 18 C 1.47208 * 109.47127 * 265.73816 * 17 8 6 19 19 N 7.61113 * 112.06915 * 152.22856 * 2 1 3 20 20 C 1.53175 * 109.11217 * 56.93434 * 5 4 2 21 21 C 1.53101 * 109.16131 * 303.15568 * 20 5 4 22 22 H 1.08999 * 109.40622 * 297.49297 * 21 20 5 23 23 C 1.52997 * 109.49484 * 177.50771 * 21 20 5 24 24 O 1.42904 * 109.48951 * 239.97480 * 2 1 3 25 25 H 1.08998 * 109.47243 * 299.97030 * 1 2 3 26 26 H 1.08998 * 109.47361 * 59.97733 * 1 2 3 27 27 H 1.08998 * 109.46785 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.52014 * 302.48185 * 4 2 1 29 29 H 1.08996 * 109.57346 * 182.32254 * 4 2 1 30 30 H 1.09002 * 109.54572 * 297.02544 * 5 4 2 31 31 H 0.97002 * 120.00314 * 180.02562 * 12 11 9 32 32 H 1.09007 * 109.46768 * 145.74426 * 17 8 6 33 33 H 1.09002 * 109.47600 * 25.74296 * 17 8 6 34 34 H 1.09002 * 109.52160 * 62.97052 * 20 5 4 35 35 H 1.08999 * 109.52661 * 183.15790 * 20 5 4 36 36 H 1.09001 * 109.46824 * 299.95951 * 23 21 20 37 37 H 1.08991 * 109.47529 * 59.95783 * 23 21 20 38 38 H 1.09006 * 109.46838 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 1.5760 -2.1813 1.2121 6 6 2.1384 -2.9201 2.3991 7 8 2.9261 -2.3691 3.1388 8 7 1.7664 -4.1932 2.6386 9 6 0.9478 -4.8461 1.7537 10 1 0.5481 -4.3206 0.8991 11 6 0.6325 -6.1841 1.9563 12 7 1.4519 -6.9571 2.6331 13 14 -0.9562 -6.8841 1.2667 14 1 -1.6980 -5.8157 0.5503 15 1 -0.6427 -7.9875 0.3236 16 1 -1.7910 -7.4057 2.3786 17 6 2.2366 -4.8791 3.8447 18 6 3.4519 -5.6478 3.5297 19 7 4.3897 -6.2410 3.2865 20 6 2.0751 -2.8335 -0.0809 21 6 1.5650 -2.0285 -1.2792 22 1 0.4755 -2.0551 -1.2960 23 6 2.1103 -2.6371 -2.5726 24 8 2.0068 -0.6741 -1.1664 25 1 -0.3633 0.5134 0.8902 26 1 -0.3634 0.5142 -0.8897 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6419 -0.2357 2.1398 29 1 3.1298 -0.6871 1.2721 30 1 0.4871 -2.2182 1.2422 31 1 1.2319 -7.8912 2.7743 32 1 1.4612 -5.5562 4.2032 33 1 2.4620 -4.1433 4.6167 34 1 3.1651 -2.8424 -0.0872 35 1 1.7012 -3.8556 -0.1413 36 1 3.1998 -2.6107 -2.5554 37 1 1.7733 -3.6701 -2.6584 38 1 1.7465 -2.0639 -3.4254 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354400230.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:09:02 Heat of formation + Delta-G solvation = -66.912386 kcal Electronic energy + Delta-G solvation = -21432.512303 eV Core-core repulsion = 18274.792652 eV Total energy + Delta-G solvation = -3157.719651 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 4.93 seconds Orbital eigenvalues (eV) -41.48199 -39.88576 -37.52035 -36.31451 -34.58588 -34.21962 -33.46556 -30.62167 -29.25057 -27.42674 -26.83648 -24.57252 -23.31733 -21.08606 -20.23579 -19.61800 -18.16844 -18.01632 -17.15859 -16.72463 -16.25752 -16.19317 -15.98668 -15.25257 -15.01393 -14.61753 -14.31340 -14.25833 -13.90700 -13.63595 -13.39039 -13.37256 -13.11007 -12.98647 -12.85731 -12.73821 -12.64817 -12.25308 -12.18350 -12.03847 -11.89494 -11.80858 -11.50020 -11.13809 -10.96866 -10.61582 -10.09086 -10.00500 -8.38413 -5.86356 1.42038 1.56095 1.67017 1.80055 2.03788 2.28771 2.38730 2.89242 3.01466 3.10175 3.67403 3.81073 3.93876 4.00202 4.04592 4.23893 4.36974 4.47189 4.50525 4.54758 4.61247 4.73859 4.80667 4.87212 4.92054 5.00081 5.09272 5.11512 5.21939 5.26615 5.31356 5.37558 5.48526 5.56111 5.66312 6.35182 6.42508 7.02103 7.09023 7.47538 7.87877 8.65868 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.017415 B = 0.007839 C = 0.006534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.392225 B = 3570.807283 C = 4284.563559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.089 3.911 3 H 0.116 0.884 4 C -0.122 4.122 5 C -0.081 4.081 6 C 0.456 3.544 7 O -0.629 6.629 8 N -0.449 5.449 9 C -0.354 4.354 10 H 0.131 0.869 11 C 0.003 3.997 12 N -0.892 5.892 13 Si 0.981 3.019 14 H -0.248 1.248 15 H -0.294 1.294 16 H -0.279 1.279 17 C 0.228 3.772 18 C 0.271 3.729 19 N -0.522 5.522 20 C -0.141 4.141 21 C 0.088 3.912 22 H 0.078 0.922 23 C -0.142 4.142 24 O -0.391 6.391 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.107 0.893 31 H 0.273 0.727 32 H 0.130 0.870 33 H 0.102 0.898 34 H 0.037 0.963 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.619 9.298 -6.109 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.031 3.969 3 H 0.134 0.866 4 C -0.160 4.160 5 C -0.102 4.102 6 C 0.247 3.753 7 O -0.516 6.516 8 N -0.167 5.167 9 C -0.480 4.480 10 H 0.148 0.852 11 C -0.199 4.199 12 N -0.530 5.530 13 Si 0.806 3.194 14 H -0.171 1.171 15 H -0.221 1.221 16 H -0.204 1.204 17 C 0.101 3.899 18 C -0.046 4.046 19 N -0.204 5.204 20 C -0.179 4.179 21 C 0.031 3.969 22 H 0.096 0.904 23 C -0.199 4.199 24 O -0.311 6.311 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.083 0.917 32 H 0.147 0.853 33 H 0.120 0.880 34 H 0.056 0.944 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.744 8.562 -6.176 12.528 hybrid contribution -0.608 -0.984 0.381 1.218 sum -7.352 7.579 -5.795 12.044 Atomic orbital electron populations 1.22429 0.94716 1.03064 1.03684 1.22297 0.94790 0.96281 0.83491 0.86611 1.21952 1.00757 0.93971 0.99310 1.21046 1.01876 0.94837 0.92404 1.20878 0.83480 0.82868 0.88080 1.90530 1.39080 1.69657 1.52374 1.43977 1.42696 1.10184 1.19890 1.20249 1.24257 0.94715 1.08794 0.85175 1.25960 1.00440 0.95901 0.97637 1.70017 1.34279 1.06838 1.41855 0.85046 0.78369 0.78198 0.77818 1.17091 1.22095 1.20439 1.18878 0.88420 0.93726 0.88887 1.29682 0.92495 0.91125 0.91339 1.80817 1.16460 1.13125 1.09987 1.22329 1.00115 1.01557 0.93870 1.22152 0.98837 0.81418 0.94501 0.90378 1.21766 1.01353 1.01145 0.95663 1.87918 1.74600 1.24993 1.43630 0.90171 0.90798 0.92107 0.90360 0.93413 0.87497 0.91682 0.85299 0.88021 0.94383 0.88920 0.93121 0.90149 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.64 8.65 71.98 0.62 -3.01 16 2 C 0.09 2.22 3.91 30.62 0.12 2.34 16 3 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 4 C -0.12 -3.83 4.29 30.68 0.13 -3.70 16 5 C -0.08 -2.82 1.46 -11.42 -0.02 -2.83 16 6 C 0.46 19.99 7.00 87.66 0.61 20.61 16 7 O -0.63 -30.98 15.49 -3.07 -0.05 -31.03 16 8 N -0.45 -20.07 2.59 -645.39 -1.67 -21.75 16 9 C -0.35 -15.32 8.14 84.04 0.68 -14.63 16 10 H 0.13 5.12 4.80 -2.91 -0.01 5.11 16 11 C 0.00 0.14 4.95 84.93 0.42 0.56 16 12 N -0.89 -42.67 8.94 21.66 0.19 -42.48 16 13 Si 0.98 34.99 29.62 68.60 2.03 37.02 16 14 H -0.25 -8.05 7.11 99.48 0.71 -7.34 16 15 H -0.29 -11.04 7.11 99.48 0.71 -10.33 16 16 H -0.28 -9.97 7.11 99.48 0.71 -9.26 16 17 C 0.23 10.01 5.23 84.58 0.44 10.45 16 18 C 0.27 13.42 13.42 89.44 1.20 14.62 16 19 N -0.52 -27.65 18.54 20.01 0.37 -27.28 16 20 C -0.14 -4.81 4.28 30.69 0.13 -4.68 16 21 C 0.09 2.42 2.93 30.63 0.09 2.51 16 22 H 0.08 1.89 6.34 -2.39 -0.02 1.87 16 23 C -0.14 -3.43 9.57 71.98 0.69 -2.74 16 24 O -0.39 -11.26 10.24 -148.98 -1.53 -12.79 16 25 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.29 4.98 -2.39 -0.01 1.28 16 28 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.05 1.75 7.94 -2.39 -0.02 1.73 16 30 H 0.11 3.36 6.20 -2.39 -0.01 3.35 16 31 H 0.27 12.71 8.31 -92.71 -0.77 11.94 16 32 H 0.13 5.53 6.32 -2.38 -0.02 5.51 16 33 H 0.10 4.14 7.36 -2.39 -0.02 4.12 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 35 H 0.09 3.36 5.23 -2.39 -0.01 3.34 16 36 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -59.52 303.21 5.55 -53.97 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 1.08 Total: 24.83 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: 5.13 Total: 19.50 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -1.11 Total: -91.50 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -1.57 Total: -43.82 kcal Atomic # 14 Polarization: 34.99 SS G_CDS: 2.03 Total: 37.02 kcal Total: -59.52 5.55 -53.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354400230.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.945 kcal (2) G-P(sol) polarization free energy of solvation -59.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.93 seconds