Wall clock time and date at job start Thu Apr 9 2020 13:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 120.00279 * 2 1 4 4 N 1.46501 * 109.47289 * 124.99870 * 3 2 1 5 5 C 1.46495 * 119.99971 * 270.00260 * 4 3 2 6 6 C 1.50695 * 109.47248 * 269.99965 * 5 4 3 7 7 H 1.08002 * 120.00237 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00210 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99448 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00229 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47138 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47142 * 119.99719 * 10 8 6 13 13 H 1.48498 * 109.46958 * 239.99762 * 10 8 6 14 14 C 1.34773 * 119.99862 * 90.00110 * 4 3 2 15 15 O 1.21280 * 120.00278 * 179.97438 * 14 4 3 16 16 C 1.50700 * 119.99954 * 0.02562 * 14 4 3 17 17 N 1.46498 * 109.47501 * 179.97438 * 16 14 4 18 18 C 1.46768 * 124.34879 * 89.99466 * 17 16 14 19 19 C 1.54480 * 105.55098 * 197.08340 * 18 17 16 20 20 C 1.54631 * 101.76472 * 334.54015 * 19 18 17 21 21 C 1.34621 * 124.47196 * 270.02709 * 17 16 14 22 22 O 1.21286 * 124.90539 * 359.55259 * 21 17 16 23 23 H 1.07994 * 119.99860 * 359.97438 * 1 2 3 24 24 H 1.08001 * 119.99852 * 180.02562 * 1 2 3 25 25 H 1.08003 * 120.00075 * 180.02562 * 2 1 3 26 26 H 1.09009 * 109.46596 * 5.00302 * 3 2 1 27 27 H 1.08998 * 109.47064 * 245.00330 * 3 2 1 28 28 H 1.08997 * 109.47379 * 30.00399 * 5 4 3 29 29 H 1.09003 * 109.47056 * 149.99683 * 5 4 3 30 30 H 0.97008 * 119.99487 * 180.02562 * 9 8 6 31 31 H 1.09002 * 109.47506 * 59.99693 * 16 14 4 32 32 H 1.08998 * 109.47494 * 299.99513 * 16 14 4 33 33 H 1.09002 * 110.24468 * 78.03845 * 18 17 16 34 34 H 1.09002 * 110.24463 * 316.12602 * 18 17 16 35 35 H 1.08995 * 110.97082 * 92.66028 * 19 18 17 36 36 H 1.09001 * 110.96924 * 216.42557 * 19 18 17 37 37 H 1.09000 * 110.48694 * 143.47575 * 20 19 18 38 38 H 1.08994 * 110.49106 * 266.12244 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3033 3.8371 1.6365 8 6 2.5194 4.0665 3.6086 9 7 1.9599 3.4656 4.6361 10 14 2.8725 5.8996 3.6773 11 1 3.5004 6.3308 2.4025 12 1 1.6019 6.6412 3.8794 13 1 3.7963 6.1838 4.8046 14 6 4.2497 0.8662 0.9824 15 8 5.0200 0.8887 1.9189 16 6 4.6972 0.3184 -0.3483 17 7 6.0918 -0.1199 -0.2520 18 6 6.5099 -1.4730 0.1331 19 6 8.0006 -1.3517 0.5196 20 6 8.4375 -0.1119 -0.2948 21 6 7.1562 0.6647 -0.5042 22 8 7.0963 1.8260 -0.8489 23 1 -0.5399 0.9353 0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3586 2.1317 0.0896 27 1 2.6213 1.4026 -0.9314 28 1 1.4889 1.6966 2.5459 29 1 3.0990 1.3603 3.2259 30 1 1.7310 3.9743 5.4297 31 1 4.6126 1.0953 -1.1081 32 1 4.0682 -0.5284 -0.6228 33 1 6.3925 -2.1575 -0.7070 34 1 5.9262 -1.8198 0.9859 35 1 8.1132 -1.1752 1.5892 36 1 8.5569 -2.2368 0.2110 37 1 9.1556 0.4822 0.2705 38 1 8.8610 -0.4143 -1.2525 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359370648.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:09:07 Heat of formation + Delta-G solvation = -41.399008 kcal Electronic energy + Delta-G solvation = -20596.725572 eV Core-core repulsion = 17440.112265 eV Total energy + Delta-G solvation = -3156.613308 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.34232 -38.74135 -36.21498 -35.62926 -33.28355 -32.65368 -32.03254 -28.45674 -27.50080 -26.63134 -25.33664 -22.77373 -21.88166 -20.10050 -19.58124 -18.38391 -16.98664 -16.63929 -16.41148 -16.02881 -15.30327 -15.20846 -14.66456 -14.34672 -13.88787 -13.65590 -13.41836 -13.24818 -12.97814 -12.58725 -12.42589 -12.27817 -11.72352 -11.67029 -11.45620 -11.26406 -11.04983 -11.02841 -10.85024 -10.59829 -10.16107 -9.65046 -9.60904 -9.36531 -9.22618 -8.41541 -8.36267 -7.69872 -6.02219 -4.06299 2.40172 2.70890 3.08879 3.32500 3.35147 3.40544 3.47362 4.06048 4.38720 4.47213 4.48488 4.79545 4.99683 5.04430 5.18718 5.30295 5.32190 5.34249 5.39741 5.47550 5.52467 5.65242 5.68167 5.77817 5.98319 5.98480 6.16640 6.51102 6.74596 6.87839 7.07716 7.23062 7.44256 7.54969 7.94818 8.25722 8.29990 8.40530 8.91944 9.07451 9.58875 11.05954 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.006280 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.688478 B = 4457.311160 C = 5549.961539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.170 4.170 3 C 0.134 3.866 4 N -0.592 5.592 5 C 0.248 3.752 6 C -0.525 4.525 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.896 5.896 10 Si 0.897 3.103 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.488 3.512 15 O -0.530 6.530 16 C 0.107 3.893 17 N -0.603 5.603 18 C 0.105 3.895 19 C -0.130 4.130 20 C -0.151 4.151 21 C 0.520 3.480 22 O -0.530 6.530 23 H 0.100 0.900 24 H 0.094 0.906 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.033 0.967 29 H 0.042 0.958 30 H 0.262 0.738 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.644 -13.153 -12.242 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.189 4.189 3 C 0.010 3.990 4 N -0.324 5.324 5 C 0.129 3.871 6 C -0.563 4.563 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.725 3.275 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.273 3.727 15 O -0.406 6.406 16 C -0.019 4.019 17 N -0.337 5.337 18 C -0.018 4.018 19 C -0.168 4.168 20 C -0.192 4.192 21 C 0.308 3.692 22 O -0.405 6.405 23 H 0.118 0.882 24 H 0.112 0.888 25 H 0.121 0.879 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.887 -12.445 -11.728 17.785 hybrid contribution -0.090 0.955 0.241 0.989 sum 4.797 -11.490 -11.487 16.941 Atomic orbital electron populations 1.23826 0.95838 1.01823 1.00285 1.23408 0.96443 0.98869 1.00182 1.20619 0.93280 0.95499 0.89636 1.48240 1.10346 1.60181 1.13671 1.19270 0.95318 0.93811 0.78675 1.21494 1.40219 0.93339 1.01294 0.92375 1.24928 0.95047 0.98800 0.95315 1.69951 1.42306 1.36063 1.05186 0.86453 0.77881 0.84966 0.78246 1.19706 1.20939 1.20879 1.20788 0.82576 0.79246 0.90098 1.90668 1.52318 1.55937 1.41685 1.21332 0.81903 1.01303 0.97401 1.47843 1.05132 1.12501 1.68223 1.22048 0.96001 0.83403 1.00317 1.22569 0.94719 0.97957 1.01514 1.22278 0.96674 0.97683 1.02520 1.20942 0.86356 0.86049 0.75845 1.90732 1.86754 1.15660 1.47392 0.88217 0.88750 0.87860 0.89230 0.90834 0.94905 0.94002 0.92828 0.87646 0.88116 0.91208 0.90247 0.89662 0.89370 0.88066 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 14.32 29.02 0.42 -1.82 16 2 C -0.17 -2.29 9.74 -36.02 -0.35 -2.64 16 3 C 0.13 2.16 5.65 -5.19 -0.03 2.13 16 4 N -0.59 -12.67 2.44 -176.43 -0.43 -13.10 16 5 C 0.25 6.61 5.16 -5.20 -0.03 6.58 16 6 C -0.52 -15.36 9.39 -34.44 -0.32 -15.68 16 7 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 10 Si 0.90 22.65 29.54 -169.99 -5.02 17.63 16 11 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 13 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 14 C 0.49 10.38 7.74 -10.99 -0.09 10.29 16 15 O -0.53 -13.70 16.01 5.56 0.09 -13.61 16 16 C 0.11 1.66 4.97 -5.19 -0.03 1.63 16 17 N -0.60 -9.08 2.43 -173.72 -0.42 -9.50 16 18 C 0.11 1.12 7.34 -3.12 -0.02 1.10 16 19 C -0.13 -1.19 7.18 -25.10 -0.18 -1.37 16 20 C -0.15 -1.68 6.86 -26.74 -0.18 -1.87 16 21 C 0.52 8.67 8.03 -10.77 -0.09 8.59 16 22 O -0.53 -11.28 17.60 5.55 0.10 -11.18 16 23 H 0.10 1.24 7.84 -52.49 -0.41 0.83 16 24 H 0.09 0.99 8.06 -52.49 -0.42 0.57 16 25 H 0.10 1.25 7.83 -52.48 -0.41 0.84 16 26 H 0.09 1.52 7.72 -51.92 -0.40 1.12 16 27 H 0.07 0.99 6.44 -51.93 -0.33 0.66 16 28 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 29 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.11 1.62 7.19 -51.93 -0.37 1.25 16 32 H 0.10 1.17 7.78 -51.93 -0.40 0.76 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 327.79 15.07 4.94 4.94 Total: -1.00 -37.56 327.79 -6.65 -44.21 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -5.64 Total: -1.63 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -1.00 Total: 8.63 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.12 Total: -49.00 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: 0.19 Total: -24.79 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -37.56 -6.65 -44.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359370648.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.810 kcal (2) G-P(sol) polarization free energy of solvation -37.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds