Wall clock time and date at job start Thu Apr 9 2020 13:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 120.00279 * 2 1 4 4 N 1.46501 * 109.47289 * 124.99870 * 3 2 1 5 5 C 1.46495 * 119.99971 * 270.00260 * 4 3 2 6 6 C 1.50695 * 109.47248 * 269.99965 * 5 4 3 7 7 H 1.08002 * 120.00237 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00210 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99448 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00229 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47138 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47142 * 119.99719 * 10 8 6 13 13 H 1.48498 * 109.46958 * 239.99762 * 10 8 6 14 14 C 1.34773 * 119.99862 * 90.00110 * 4 3 2 15 15 O 1.21280 * 120.00278 * 179.97438 * 14 4 3 16 16 C 1.50700 * 119.99954 * 0.02562 * 14 4 3 17 17 N 1.46498 * 109.47501 * 179.97438 * 16 14 4 18 18 C 1.46768 * 124.34879 * 89.99466 * 17 16 14 19 19 C 1.54480 * 105.55098 * 197.08340 * 18 17 16 20 20 C 1.54631 * 101.76472 * 334.54015 * 19 18 17 21 21 C 1.34621 * 124.47196 * 270.02709 * 17 16 14 22 22 O 1.21286 * 124.90539 * 359.55259 * 21 17 16 23 23 H 1.07994 * 119.99860 * 359.97438 * 1 2 3 24 24 H 1.08001 * 119.99852 * 180.02562 * 1 2 3 25 25 H 1.08003 * 120.00075 * 180.02562 * 2 1 3 26 26 H 1.09009 * 109.46596 * 5.00302 * 3 2 1 27 27 H 1.08998 * 109.47064 * 245.00330 * 3 2 1 28 28 H 1.08997 * 109.47379 * 30.00399 * 5 4 3 29 29 H 1.09003 * 109.47056 * 149.99683 * 5 4 3 30 30 H 0.97008 * 119.99487 * 180.02562 * 9 8 6 31 31 H 1.09002 * 109.47506 * 59.99693 * 16 14 4 32 32 H 1.08998 * 109.47494 * 299.99513 * 16 14 4 33 33 H 1.09002 * 110.24468 * 78.03845 * 18 17 16 34 34 H 1.09002 * 110.24463 * 316.12602 * 18 17 16 35 35 H 1.08995 * 110.97082 * 92.66028 * 19 18 17 36 36 H 1.09001 * 110.96924 * 216.42557 * 19 18 17 37 37 H 1.09000 * 110.48694 * 143.47575 * 20 19 18 38 38 H 1.08994 * 110.49106 * 266.12244 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3033 3.8371 1.6365 8 6 2.5194 4.0665 3.6086 9 7 1.9599 3.4656 4.6361 10 14 2.8725 5.8996 3.6773 11 1 3.5004 6.3308 2.4025 12 1 1.6019 6.6412 3.8794 13 1 3.7963 6.1838 4.8046 14 6 4.2497 0.8662 0.9824 15 8 5.0200 0.8887 1.9189 16 6 4.6972 0.3184 -0.3483 17 7 6.0918 -0.1199 -0.2520 18 6 6.5099 -1.4730 0.1331 19 6 8.0006 -1.3517 0.5196 20 6 8.4375 -0.1119 -0.2948 21 6 7.1562 0.6647 -0.5042 22 8 7.0963 1.8260 -0.8489 23 1 -0.5399 0.9353 0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3586 2.1317 0.0896 27 1 2.6213 1.4026 -0.9314 28 1 1.4889 1.6966 2.5459 29 1 3.0990 1.3603 3.2259 30 1 1.7310 3.9743 5.4297 31 1 4.6126 1.0953 -1.1081 32 1 4.0682 -0.5284 -0.6228 33 1 6.3925 -2.1575 -0.7070 34 1 5.9262 -1.8198 0.9859 35 1 8.1132 -1.1752 1.5892 36 1 8.5569 -2.2368 0.2110 37 1 9.1556 0.4822 0.2705 38 1 8.8610 -0.4143 -1.2525 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359370648.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:09:07 Heat of formation + Delta-G solvation = -67.715920 kcal Electronic energy + Delta-G solvation = -20597.866759 eV Core-core repulsion = 17440.112265 eV Total energy + Delta-G solvation = -3157.754495 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.59175 -40.31966 -37.50299 -37.16513 -35.20629 -33.80210 -33.66780 -30.20962 -28.45105 -28.13125 -26.88097 -24.75152 -22.76672 -21.39749 -20.78840 -19.83417 -18.72815 -18.26035 -17.93370 -17.27150 -16.92937 -16.53666 -16.14608 -15.97327 -15.39679 -14.78792 -14.63074 -14.52802 -14.41946 -14.16506 -13.75961 -13.45397 -13.27844 -13.11330 -13.02130 -12.83822 -12.64130 -12.31063 -12.29619 -12.19577 -11.87848 -11.70347 -10.97414 -10.89700 -10.69820 -10.31569 -9.69891 -9.51430 -8.28208 -6.42434 1.29138 1.30828 1.33029 1.44981 1.47772 1.73185 1.99507 2.31847 2.54814 3.01085 3.43113 3.61907 3.66409 4.03918 4.06730 4.13674 4.18085 4.25706 4.29646 4.43260 4.66514 4.72530 4.83431 4.88403 4.95603 5.06415 5.07950 5.16821 5.25439 5.43421 5.48450 5.70776 5.73839 5.95124 6.01719 6.10710 6.62805 6.70802 7.10319 7.22586 7.40046 8.78994 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.006280 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.688478 B = 4457.311160 C = 5549.961539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.182 4.182 3 C 0.129 3.871 4 N -0.597 5.597 5 C 0.267 3.733 6 C -0.545 4.545 7 H 0.044 0.956 8 C 0.011 3.989 9 N -0.925 5.925 10 Si 0.963 3.037 11 H -0.274 1.274 12 H -0.262 1.262 13 H -0.280 1.280 14 C 0.477 3.523 15 O -0.589 6.589 16 C 0.116 3.884 17 N -0.608 5.608 18 C 0.097 3.903 19 C -0.120 4.120 20 C -0.143 4.143 21 C 0.498 3.502 22 O -0.592 6.592 23 H 0.095 0.905 24 H 0.120 0.880 25 H 0.124 0.876 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.025 0.975 29 H -0.003 1.003 30 H 0.268 0.732 31 H 0.108 0.892 32 H 0.150 0.850 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.134 0.866 37 H 0.097 0.903 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.790 -14.782 -14.043 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.201 4.201 3 C 0.007 3.993 4 N -0.328 5.328 5 C 0.145 3.855 6 C -0.584 4.584 7 H 0.063 0.937 8 C -0.188 4.188 9 N -0.564 5.564 10 Si 0.788 3.212 11 H -0.199 1.199 12 H -0.187 1.187 13 H -0.206 1.206 14 C 0.265 3.735 15 O -0.469 6.469 16 C -0.010 4.010 17 N -0.340 5.340 18 C -0.024 4.024 19 C -0.158 4.158 20 C -0.183 4.183 21 C 0.289 3.711 22 O -0.473 6.473 23 H 0.113 0.887 24 H 0.138 0.862 25 H 0.142 0.858 26 H 0.093 0.907 27 H 0.121 0.879 28 H 0.043 0.957 29 H 0.015 0.985 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.168 0.832 33 H 0.132 0.868 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.153 0.847 37 H 0.116 0.884 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.998 -14.133 -13.561 20.214 hybrid contribution -0.198 1.421 0.822 1.654 sum 4.799 -12.712 -12.738 18.625 Atomic orbital electron populations 1.24061 0.95608 1.02881 0.98087 1.23301 0.96745 0.98009 1.02044 1.20883 0.92751 0.96920 0.88743 1.48238 1.11690 1.59627 1.13234 1.18666 0.93956 0.92358 0.80494 1.21716 1.40579 0.94791 1.01271 0.93736 1.25798 0.94603 1.03595 0.94827 1.70045 1.42723 1.37960 1.05718 0.85435 0.78470 0.79360 0.77967 1.19881 1.18714 1.20555 1.21907 0.81676 0.78212 0.91702 1.90627 1.53793 1.58320 1.44183 1.21350 0.83347 1.03010 0.93253 1.48172 1.04592 1.14112 1.67122 1.22436 0.96577 0.81674 1.01728 1.22639 0.94202 0.98751 1.00196 1.22348 0.93742 0.97545 1.04622 1.22050 0.88667 0.85703 0.74710 1.90681 1.87919 1.18392 1.50266 0.88711 0.86181 0.85837 0.90674 0.87896 0.95668 0.98535 0.92275 0.87429 0.83230 0.86752 0.91274 0.91527 0.84739 0.88445 0.84562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.82 14.32 67.78 0.97 -2.85 16 2 C -0.18 -4.56 9.74 25.65 0.25 -4.31 16 3 C 0.13 4.10 5.65 85.63 0.48 4.58 16 4 N -0.60 -26.20 2.44 -830.50 -2.03 -28.22 16 5 C 0.27 14.90 5.16 85.63 0.44 15.34 16 6 C -0.54 -33.15 9.39 25.60 0.24 -32.91 16 7 H 0.04 2.76 7.81 -2.91 -0.02 2.74 16 8 C 0.01 0.66 5.46 84.66 0.46 1.12 16 9 N -0.92 -57.33 13.29 21.45 0.28 -57.04 16 10 Si 0.96 47.24 29.54 68.60 2.03 49.27 16 11 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 12 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 13 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 14 C 0.48 20.77 7.74 87.66 0.68 21.45 16 15 O -0.59 -31.95 16.01 -3.03 -0.05 -32.00 16 16 C 0.12 3.48 4.97 85.63 0.43 3.90 16 17 N -0.61 -17.50 2.43 -822.00 -2.00 -19.50 16 18 C 0.10 1.79 7.34 86.83 0.64 2.43 16 19 C -0.12 -1.86 7.18 31.65 0.23 -1.63 16 20 C -0.14 -2.89 6.86 30.59 0.21 -2.68 16 21 C 0.50 16.47 8.03 87.87 0.71 17.18 16 22 O -0.59 -25.99 17.60 -3.05 -0.05 -26.05 16 23 H 0.09 2.23 7.84 -2.91 -0.02 2.21 16 24 H 0.12 2.13 8.06 -2.91 -0.02 2.11 16 25 H 0.12 2.60 7.83 -2.91 -0.02 2.58 16 26 H 0.07 2.58 7.72 -2.38 -0.02 2.56 16 27 H 0.10 2.62 6.44 -2.39 -0.02 2.61 16 28 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 29 H 0.00 -0.22 7.42 -2.39 -0.02 -0.24 16 30 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 31 H 0.11 3.21 7.19 -2.39 -0.02 3.19 16 32 H 0.15 2.95 7.78 -2.39 -0.02 2.93 16 33 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -88.34 327.79 4.96 -83.38 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.04 Total: 8.53 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: 5.73 Total: 21.63 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -3.74 Total: -104.76 kcal Atomic # 8 Polarization: -57.95 SS G_CDS: -0.10 Total: -58.05 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -88.34 4.96 -83.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359370648.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.667 kcal (2) G-P(sol) polarization free energy of solvation -88.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds