Wall clock time and date at job start Thu Apr 9 2020 13:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 119.99897 * 2 1 4 4 N 1.46499 * 109.47146 * 125.19915 * 3 2 1 5 5 C 1.46506 * 119.99935 * 267.59042 * 4 3 2 6 6 C 1.50694 * 109.47274 * 274.42339 * 5 4 3 7 7 H 1.07995 * 120.00180 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99949 * 179.97438 * 6 5 4 9 9 N 1.31507 * 119.99887 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99836 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.46976 * 90.00172 * 10 8 6 12 12 H 1.48498 * 109.47061 * 210.00121 * 10 8 6 13 13 H 1.48503 * 109.47057 * 329.99925 * 10 8 6 14 14 C 1.34778 * 120.00335 * 87.59454 * 4 3 2 15 15 O 1.21279 * 119.99437 * 5.20995 * 14 4 3 16 16 C 1.50700 * 119.99888 * 185.20930 * 14 4 3 17 17 H 1.08994 * 109.60196 * 33.05814 * 16 14 4 18 18 C 1.53349 * 109.73422 * 153.46823 * 16 14 4 19 19 C 1.53061 * 108.43691 * 187.35065 * 18 16 14 20 20 C 1.50177 * 109.89017 * 311.11527 * 19 18 16 21 21 O 1.21279 * 118.24159 * 197.55864 * 20 19 18 22 22 N 1.33351 * 123.51200 * 17.58253 * 20 19 18 23 23 C 1.45750 * 124.10613 * 357.75568 * 22 20 19 24 24 H 1.08003 * 119.99971 * 359.97438 * 1 2 3 25 25 H 1.07990 * 120.00190 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00172 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47509 * 5.19698 * 3 2 1 28 28 H 1.09002 * 109.47579 * 245.19802 * 3 2 1 29 29 H 1.09005 * 109.46518 * 34.42024 * 5 4 3 30 30 H 1.08996 * 109.46764 * 154.41812 * 5 4 3 31 31 H 0.97005 * 120.00128 * 179.97438 * 9 8 6 32 32 H 1.08994 * 109.67402 * 307.10343 * 18 16 14 33 33 H 1.09009 * 109.67137 * 67.63471 * 18 16 14 34 34 H 1.08991 * 109.39740 * 190.98631 * 19 18 16 35 35 H 1.08999 * 109.39667 * 71.23976 * 19 18 16 36 36 H 0.97000 * 117.94929 * 177.77853 * 22 20 19 37 37 H 1.09008 * 109.29604 * 258.78430 * 23 22 20 38 38 H 1.08997 * 109.30289 * 139.41326 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9971 1.3299 1.1287 5 6 2.5831 1.9090 2.4092 6 6 2.8165 3.3976 2.3862 7 1 3.2312 3.8657 1.5058 8 6 2.4994 4.1622 3.4890 9 7 2.7026 5.4613 3.4688 10 14 1.7801 3.3528 5.0111 11 1 2.8801 2.9433 5.9207 12 1 0.8917 4.3155 5.7107 13 1 0.9964 2.1562 4.6120 14 6 4.2370 0.8202 0.9890 15 8 4.6124 0.4273 -0.0952 16 6 5.1566 0.7386 2.1801 17 1 4.5719 0.5565 3.0817 18 6 6.1626 -0.4014 1.9803 19 6 6.9576 -0.5782 3.2763 20 6 7.4643 0.7536 3.7506 21 8 8.3661 0.7689 4.5614 22 7 6.9755 1.9202 3.3282 23 6 5.9269 2.0517 2.3246 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9352 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3589 2.1315 0.0931 28 1 2.6185 1.4043 -0.9329 29 1 1.5240 1.7097 2.5725 30 1 3.1654 1.4622 3.2150 31 1 2.4792 5.9993 4.2445 32 1 5.6306 -1.3237 1.7473 33 1 6.8417 -0.1528 1.1647 34 1 7.8019 -1.2433 3.0953 35 1 6.3128 -1.0131 4.0400 36 1 7.3410 2.7322 3.7128 37 1 6.3760 2.3132 1.3664 38 1 5.2386 2.8420 2.6240 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359413600.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:09:09 Heat of formation + Delta-G solvation = -76.444267 kcal Electronic energy + Delta-G solvation = -21015.258020 eV Core-core repulsion = 17857.125036 eV Total energy + Delta-G solvation = -3158.132984 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.73013 -40.50152 -37.48698 -37.03792 -35.07537 -34.09589 -33.87692 -31.05105 -29.97197 -27.25312 -25.59452 -24.58790 -23.79580 -21.37299 -20.45243 -19.64216 -18.94284 -18.47493 -17.81856 -17.33108 -17.02940 -16.46480 -16.15454 -15.88858 -15.47464 -15.11138 -15.02230 -14.67968 -14.37063 -14.09655 -13.99550 -13.58761 -13.27791 -12.90608 -12.84680 -12.69932 -12.51421 -12.27896 -12.14877 -11.96634 -11.85750 -11.62578 -10.87145 -10.84311 -10.72211 -10.26121 -10.13386 -9.47220 -8.28179 -6.33990 1.29199 1.39868 1.43728 1.50145 1.55468 1.62614 2.28027 2.34547 2.41831 3.06095 3.44073 3.66676 3.68809 3.76784 4.03413 4.14008 4.24237 4.27002 4.45098 4.58311 4.63177 4.73544 4.79599 4.82993 4.86036 4.91940 5.04554 5.09329 5.19709 5.44990 5.57686 5.70791 5.72109 5.91247 6.18659 6.31379 6.59872 6.72654 7.14556 7.21200 7.33669 8.86742 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.012816 B = 0.008958 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.162398 B = 3124.936276 C = 4642.715651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.177 4.177 3 C 0.140 3.860 4 N -0.588 5.588 5 C 0.213 3.787 6 C -0.532 4.532 7 H 0.039 0.961 8 C 0.028 3.972 9 N -0.936 5.936 10 Si 0.925 3.075 11 H -0.266 1.266 12 H -0.290 1.290 13 H -0.238 1.238 14 C 0.526 3.474 15 O -0.580 6.580 16 C -0.119 4.119 17 H 0.111 0.889 18 C -0.095 4.095 19 C -0.124 4.124 20 C 0.514 3.486 21 O -0.607 6.607 22 N -0.707 5.707 23 C 0.123 3.877 24 H 0.102 0.898 25 H 0.119 0.881 26 H 0.105 0.895 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.267 0.733 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.402 0.598 37 H 0.064 0.936 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.837 -12.321 -1.656 12.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.196 4.196 3 C 0.018 3.982 4 N -0.317 5.317 5 C 0.091 3.909 6 C -0.570 4.570 7 H 0.058 0.942 8 C -0.172 4.172 9 N -0.575 5.575 10 Si 0.749 3.251 11 H -0.191 1.191 12 H -0.217 1.217 13 H -0.161 1.161 14 C 0.314 3.686 15 O -0.461 6.461 16 C -0.140 4.140 17 H 0.129 0.871 18 C -0.133 4.133 19 C -0.164 4.164 20 C 0.303 3.697 21 O -0.490 6.490 22 N -0.356 5.356 23 C -0.002 4.002 24 H 0.120 0.880 25 H 0.137 0.863 26 H 0.123 0.877 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.238 0.762 37 H 0.083 0.917 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.337 -12.538 -1.823 12.674 hybrid contribution -0.272 1.064 0.736 1.322 sum -0.609 -11.474 -1.087 11.542 Atomic orbital electron populations 1.24048 0.95112 1.03053 0.98324 1.23170 0.96619 0.97880 1.01929 1.20504 0.91938 0.96255 0.89521 1.47978 1.12601 1.57103 1.13976 1.19742 0.96960 0.92321 0.81872 1.21412 1.42896 0.91861 1.00840 0.94239 1.25612 0.95223 0.94884 1.01451 1.70024 1.49118 1.06731 1.31650 0.86041 0.79555 0.79651 0.79849 1.19074 1.21652 1.16062 1.20423 0.82000 0.76609 0.89593 1.90612 1.75599 1.51316 1.28614 1.21593 0.96817 0.97361 0.98267 0.87148 1.21472 0.96768 0.97909 0.97120 1.21687 1.02892 0.92943 0.98852 1.20820 0.81229 0.87547 0.80146 1.90713 1.32548 1.88674 1.37082 1.45466 1.39008 1.09000 1.42139 1.21269 0.89458 0.97665 0.91786 0.88009 0.86310 0.87659 0.90066 0.90899 0.93991 0.93161 0.92407 0.88660 0.90905 0.86006 0.86095 0.76231 0.91735 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.76 14.32 67.78 0.97 -2.79 16 2 C -0.18 -4.80 9.83 25.64 0.25 -4.55 16 3 C 0.14 4.61 5.88 85.63 0.50 5.11 16 4 N -0.59 -21.07 2.44 -830.51 -2.03 -23.10 16 5 C 0.21 8.17 4.02 85.63 0.34 8.51 16 6 C -0.53 -25.43 8.25 25.60 0.21 -25.22 16 7 H 0.04 2.19 8.06 -2.91 -0.02 2.16 16 8 C 0.03 1.41 5.47 84.66 0.46 1.87 16 9 N -0.94 -52.18 13.96 21.45 0.30 -51.89 16 10 Si 0.93 37.54 27.47 68.60 1.88 39.43 16 11 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 12 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 13 H -0.24 -8.60 6.54 99.48 0.65 -7.94 16 14 C 0.53 18.34 6.74 87.66 0.59 18.93 16 15 O -0.58 -22.52 15.88 -3.03 -0.05 -22.57 16 16 C -0.12 -3.50 1.84 -11.45 -0.02 -3.52 16 17 H 0.11 3.07 6.10 -2.39 -0.01 3.05 16 18 C -0.09 -2.25 4.77 30.73 0.15 -2.11 16 19 C -0.12 -2.73 6.03 29.70 0.18 -2.55 16 20 C 0.51 15.50 7.71 87.71 0.68 16.17 16 21 O -0.61 -22.67 17.78 -3.03 -0.05 -22.72 16 22 N -0.71 -21.21 5.45 -467.33 -2.55 -23.75 16 23 C 0.12 3.90 6.43 86.49 0.56 4.46 16 24 H 0.10 2.23 7.84 -2.91 -0.02 2.20 16 25 H 0.12 2.09 8.06 -2.92 -0.02 2.07 16 26 H 0.11 2.84 8.06 -2.91 -0.02 2.82 16 27 H 0.08 2.72 7.71 -2.39 -0.02 2.70 16 28 H 0.07 2.51 7.43 -2.39 -0.02 2.50 16 29 H 0.04 1.58 7.16 -2.38 -0.02 1.57 16 30 H 0.05 1.79 5.06 -2.39 -0.01 1.78 16 31 H 0.27 14.12 8.31 -92.70 -0.77 13.35 16 32 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 33 H 0.07 1.86 8.10 -2.38 -0.02 1.84 16 34 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.40 11.84 8.80 -92.71 -0.82 11.02 16 37 H 0.06 2.08 8.11 -2.38 -0.02 2.06 16 38 H 0.09 3.46 6.21 -2.39 -0.01 3.44 16 Total: -1.00 -63.06 314.44 2.57 -60.49 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.19 Total: 29.79 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 4.87 Total: 14.32 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -4.28 Total: -98.74 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -0.10 Total: -45.29 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 1.88 Total: 39.43 kcal Total: -63.06 2.57 -60.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359413600.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.955 kcal (2) G-P(sol) polarization free energy of solvation -63.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds