Wall clock time and date at job start Thu Apr 9 2020 13:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99903 * 2 1 4 4 N 1.46499 * 109.46665 * 125.00259 * 3 2 1 5 5 C 1.46500 * 120.00329 * 92.29716 * 4 3 2 6 6 C 1.50696 * 109.47341 * 96.66091 * 5 4 3 7 7 H 1.08005 * 119.99937 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00210 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99759 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00076 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47326 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46940 * 120.00032 * 10 8 6 13 13 H 1.48497 * 109.47280 * 240.00016 * 10 8 6 14 14 C 1.34785 * 119.99965 * 272.29195 * 4 3 2 15 15 O 1.21275 * 119.99520 * 4.16118 * 14 4 3 16 16 C 1.50699 * 119.99824 * 184.15953 * 14 4 3 17 17 H 1.09004 * 109.67175 * 39.97925 * 16 14 4 18 18 C 1.53351 * 109.67033 * 160.51098 * 16 14 4 19 19 C 1.52934 * 108.65917 * 187.27567 * 18 16 14 20 20 N 1.45755 * 110.48309 * 309.21987 * 19 18 16 21 21 C 1.33354 * 124.10305 * 19.10896 * 20 19 18 22 22 O 1.21283 * 118.24279 * 177.73359 * 21 20 19 23 23 C 1.50167 * 123.51036 * 357.75843 * 21 20 19 24 24 H 1.07997 * 120.00325 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.00029 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99573 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47256 * 5.00262 * 3 2 1 28 28 H 1.08999 * 109.46949 * 244.99856 * 3 2 1 29 29 H 1.08994 * 109.47309 * 216.66602 * 5 4 3 30 30 H 1.08998 * 109.46614 * 336.66237 * 5 4 3 31 31 H 0.97003 * 119.99695 * 179.97438 * 9 8 6 32 32 H 1.08994 * 109.60346 * 307.01867 * 18 16 14 33 33 H 1.08998 * 109.60302 * 67.50880 * 18 16 14 34 34 H 1.09001 * 109.29204 * 188.91731 * 19 18 16 35 35 H 1.08999 * 109.15223 * 69.43429 * 19 18 16 36 36 H 0.96994 * 117.94656 * 199.09665 * 20 19 18 37 37 H 1.09004 * 109.40362 * 257.44938 * 23 21 20 38 38 H 1.09005 * 109.40438 * 137.70957 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3738 0.8724 0.9561 6 6 5.2693 2.0574 0.7019 7 1 4.8523 3.0533 0.6741 8 6 6.6210 1.8703 0.5048 9 7 7.1287 0.6576 0.5382 10 14 7.7310 3.3392 0.1890 11 1 6.9206 4.5835 0.2004 12 1 8.7670 3.4140 1.2503 13 1 8.3879 3.1878 -1.1341 14 6 2.5800 1.7792 2.3336 15 8 1.4190 2.0884 2.4988 16 6 3.5601 1.8950 3.4725 17 1 4.5116 2.2751 3.1006 18 6 3.0036 2.8478 4.5376 19 6 4.0863 3.0913 5.5899 20 7 4.6306 1.8252 6.0642 21 6 4.5176 0.6699 5.4077 22 8 5.0479 -0.3131 5.8803 23 6 3.7692 0.5212 4.1142 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3586 2.1317 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 4.7020 0.3557 1.8580 30 1 4.4244 0.1900 0.1077 31 1 8.0796 0.5259 0.3991 32 1 2.7260 3.7938 4.0728 33 1 2.1294 2.3988 5.0090 34 1 3.6556 3.6357 6.4303 35 1 4.8869 3.6849 5.1485 36 1 5.1049 1.8227 6.9102 37 1 2.8004 0.0604 4.3073 38 1 4.3410 -0.1120 3.4358 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359433353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:09:20 Heat of formation + Delta-G solvation = -61.190714 kcal Electronic energy + Delta-G solvation = -21067.465487 eV Core-core repulsion = 17909.993946 eV Total energy + Delta-G solvation = -3157.471541 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.31461 -38.91273 -36.13960 -35.36931 -33.76817 -32.63210 -32.05267 -29.41787 -27.53044 -26.22659 -24.44862 -23.08349 -22.47220 -19.69839 -18.99018 -18.38979 -17.06008 -16.72231 -16.48978 -15.82999 -15.57421 -14.93286 -14.61787 -14.34608 -14.19869 -13.64957 -13.54903 -13.27946 -12.93497 -12.64546 -12.34754 -11.76459 -11.59600 -11.48719 -11.32136 -11.07659 -10.88951 -10.81315 -10.64334 -10.56430 -10.16767 -9.85502 -9.74569 -9.26580 -8.90552 -8.84180 -8.60443 -7.80694 -6.24473 -4.32844 2.55153 2.91811 3.16903 3.24569 3.27227 3.31134 3.51861 3.92738 4.27152 4.80360 4.92392 5.02185 5.08555 5.14670 5.32182 5.45548 5.53868 5.56294 5.62276 5.77795 5.97659 6.02727 6.05534 6.13220 6.21611 6.30955 6.53134 6.66571 6.90973 6.94997 7.09598 7.15709 7.45690 7.51973 7.69868 7.98133 8.24622 8.45237 8.72241 8.93447 9.35426 10.81915 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.010742 B = 0.009879 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.956193 B = 2833.685930 C = 4475.517772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.159 4.159 3 C 0.144 3.856 4 N -0.591 5.591 5 C 0.231 3.769 6 C -0.542 4.542 7 H 0.062 0.938 8 C 0.067 3.933 9 N -0.885 5.885 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.282 1.282 14 C 0.526 3.474 15 O -0.570 6.570 16 C -0.112 4.112 17 H 0.125 0.875 18 C -0.115 4.115 19 C 0.111 3.889 20 N -0.721 5.721 21 C 0.531 3.469 22 O -0.561 6.561 23 C -0.124 4.124 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.266 0.734 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.396 0.604 37 H 0.096 0.904 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.932 3.530 4.812 9.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.179 4.179 3 C 0.021 3.979 4 N -0.320 5.320 5 C 0.112 3.888 6 C -0.581 4.581 7 H 0.081 0.919 8 C -0.137 4.137 9 N -0.523 5.523 10 Si 0.721 3.279 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.208 1.208 14 C 0.314 3.686 15 O -0.451 6.451 16 C -0.133 4.133 17 H 0.143 0.857 18 C -0.153 4.153 19 C -0.013 4.013 20 N -0.373 5.373 21 C 0.318 3.682 22 O -0.440 6.440 23 C -0.164 4.164 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.125 0.875 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.230 0.770 37 H 0.115 0.885 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.181 3.074 4.861 9.200 hybrid contribution 1.046 0.755 -0.058 1.292 sum -6.134 3.830 4.803 8.681 Atomic orbital electron populations 1.23723 0.95864 1.01295 1.01579 1.23398 0.96148 0.99349 0.98958 1.20424 0.92359 0.94785 0.90318 1.48233 1.13580 1.61824 1.08366 1.19600 0.75106 0.95590 0.98544 1.21499 0.92374 0.93616 1.50607 0.91941 1.24952 0.98035 0.95962 0.94776 1.69923 1.13510 1.20434 1.48428 0.86498 0.80599 0.82663 0.78091 1.19600 1.20799 1.20798 1.20218 0.87978 0.76556 0.83883 1.90590 1.18972 1.51985 1.83533 1.21457 1.01764 0.96043 0.94080 0.85733 1.21690 0.97512 1.00859 0.95210 1.21431 0.96932 0.85079 0.97896 1.45440 1.58089 1.08536 1.25263 1.20074 0.79653 0.82342 0.86102 1.90731 1.47951 1.37014 1.68310 1.21653 1.02028 0.98359 0.94356 0.89048 0.88690 0.87549 0.90735 0.89579 0.94098 0.94341 0.92422 0.89497 0.90598 0.90582 0.91281 0.76954 0.88545 0.86635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.67 14.32 29.01 0.42 -2.25 16 2 C -0.16 -2.55 9.83 -36.02 -0.35 -2.90 16 3 C 0.14 2.56 5.76 -5.19 -0.03 2.53 16 4 N -0.59 -11.75 2.46 -176.44 -0.43 -12.19 16 5 C 0.23 5.19 4.84 -5.20 -0.03 5.17 16 6 C -0.54 -13.29 8.07 -34.44 -0.28 -13.57 16 7 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 8 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -23.79 13.29 55.43 0.74 -23.06 16 10 Si 0.89 19.85 29.54 -169.99 -5.02 14.83 16 11 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 C 0.53 10.23 6.75 -10.98 -0.07 10.16 16 15 O -0.57 -11.89 15.84 5.56 0.09 -11.80 16 16 C -0.11 -1.93 1.77 -91.56 -0.16 -2.09 16 17 H 0.12 2.39 6.42 -51.93 -0.33 2.05 16 18 C -0.11 -1.59 4.67 -26.58 -0.12 -1.71 16 19 C 0.11 1.27 7.17 -4.48 -0.03 1.23 16 20 N -0.72 -9.79 5.45 -61.38 -0.33 -10.13 16 21 C 0.53 9.20 7.71 -11.88 -0.09 9.11 16 22 O -0.56 -11.70 17.78 5.55 0.10 -11.61 16 23 C -0.12 -2.13 5.14 -28.11 -0.14 -2.28 16 24 H 0.09 1.13 8.06 -52.49 -0.42 0.71 16 25 H 0.09 1.33 7.84 -52.48 -0.41 0.92 16 26 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 27 H 0.07 1.32 7.21 -51.93 -0.37 0.94 16 28 H 0.09 1.49 8.05 -51.93 -0.42 1.07 16 29 H 0.04 0.95 4.93 -51.93 -0.26 0.70 16 30 H 0.04 0.92 8.02 -51.93 -0.42 0.50 16 31 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.08 1.06 8.11 -51.93 -0.42 0.64 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.40 4.66 8.80 -40.82 -0.36 4.30 16 37 H 0.10 1.57 8.09 -51.93 -0.42 1.15 16 38 H 0.12 2.19 5.90 -51.93 -0.31 1.89 16 LS Contribution 317.21 15.07 4.78 4.78 Total: -1.00 -29.93 317.21 -6.46 -36.38 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.38 Total: 7.80 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -1.00 Total: 4.98 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.03 Total: -45.37 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: 0.19 Total: -23.40 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.93 -6.46 -36.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359433353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.806 kcal (2) G-P(sol) polarization free energy of solvation -29.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds