Wall clock time and date at job start Thu Apr 9 2020 13:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99903 * 2 1 4 4 N 1.46499 * 109.46665 * 125.00259 * 3 2 1 5 5 C 1.46500 * 120.00329 * 92.29716 * 4 3 2 6 6 C 1.50696 * 109.47341 * 96.66091 * 5 4 3 7 7 H 1.08005 * 119.99937 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00210 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99759 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00076 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47326 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46940 * 120.00032 * 10 8 6 13 13 H 1.48497 * 109.47280 * 240.00016 * 10 8 6 14 14 C 1.34785 * 119.99965 * 272.29195 * 4 3 2 15 15 O 1.21275 * 119.99520 * 4.16118 * 14 4 3 16 16 C 1.50699 * 119.99824 * 184.15953 * 14 4 3 17 17 H 1.09004 * 109.67175 * 39.97925 * 16 14 4 18 18 C 1.53351 * 109.67033 * 160.51098 * 16 14 4 19 19 C 1.52934 * 108.65917 * 187.27567 * 18 16 14 20 20 N 1.45755 * 110.48309 * 309.21987 * 19 18 16 21 21 C 1.33354 * 124.10305 * 19.10896 * 20 19 18 22 22 O 1.21283 * 118.24279 * 177.73359 * 21 20 19 23 23 C 1.50167 * 123.51036 * 357.75843 * 21 20 19 24 24 H 1.07997 * 120.00325 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.00029 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99573 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47256 * 5.00262 * 3 2 1 28 28 H 1.08999 * 109.46949 * 244.99856 * 3 2 1 29 29 H 1.08994 * 109.47309 * 216.66602 * 5 4 3 30 30 H 1.08998 * 109.46614 * 336.66237 * 5 4 3 31 31 H 0.97003 * 119.99695 * 179.97438 * 9 8 6 32 32 H 1.08994 * 109.60346 * 307.01867 * 18 16 14 33 33 H 1.08998 * 109.60302 * 67.50880 * 18 16 14 34 34 H 1.09001 * 109.29204 * 188.91731 * 19 18 16 35 35 H 1.08999 * 109.15223 * 69.43429 * 19 18 16 36 36 H 0.96994 * 117.94656 * 199.09665 * 20 19 18 37 37 H 1.09004 * 109.40362 * 257.44938 * 23 21 20 38 38 H 1.09005 * 109.40438 * 137.70957 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3738 0.8724 0.9561 6 6 5.2693 2.0574 0.7019 7 1 4.8523 3.0533 0.6741 8 6 6.6210 1.8703 0.5048 9 7 7.1287 0.6576 0.5382 10 14 7.7310 3.3392 0.1890 11 1 6.9206 4.5835 0.2004 12 1 8.7670 3.4140 1.2503 13 1 8.3879 3.1878 -1.1341 14 6 2.5800 1.7792 2.3336 15 8 1.4190 2.0884 2.4988 16 6 3.5601 1.8950 3.4725 17 1 4.5116 2.2751 3.1006 18 6 3.0036 2.8478 4.5376 19 6 4.0863 3.0913 5.5899 20 7 4.6306 1.8252 6.0642 21 6 4.5176 0.6699 5.4077 22 8 5.0479 -0.3131 5.8803 23 6 3.7692 0.5212 4.1142 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3586 2.1317 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 4.7020 0.3557 1.8580 30 1 4.4244 0.1900 0.1077 31 1 8.0796 0.5259 0.3991 32 1 2.7260 3.7938 4.0728 33 1 2.1294 2.3988 5.0090 34 1 3.6556 3.6357 6.4303 35 1 4.8869 3.6849 5.1485 36 1 5.1049 1.8227 6.9102 37 1 2.8004 0.0604 4.3073 38 1 4.3410 -0.1120 3.4358 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359433353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:09:18 Heat of formation + Delta-G solvation = -80.834639 kcal Electronic energy + Delta-G solvation = -21068.317312 eV Core-core repulsion = 17909.993946 eV Total energy + Delta-G solvation = -3158.323365 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -41.70936 -40.40573 -37.49552 -36.91591 -35.30113 -34.23653 -33.51487 -30.64980 -29.32466 -27.68176 -25.82482 -24.76648 -23.82201 -20.98434 -20.29366 -19.86807 -18.58352 -18.34862 -18.02316 -17.25670 -17.01421 -16.48089 -16.12405 -15.90509 -15.45811 -14.97101 -14.88459 -14.68797 -14.40118 -14.18840 -13.96748 -13.42883 -13.07224 -12.84138 -12.77987 -12.66775 -12.44869 -12.20435 -12.08601 -11.99269 -11.82895 -11.63497 -11.28641 -10.68035 -10.57571 -10.19336 -10.06040 -9.46704 -8.19591 -6.34164 1.30470 1.40721 1.44602 1.53423 1.54674 1.73542 2.33903 2.36690 2.49702 3.11016 3.47819 3.72703 3.76744 3.84223 4.04329 4.18116 4.29384 4.31403 4.48293 4.55402 4.62363 4.79892 4.80931 4.84253 4.92444 5.02319 5.05456 5.27518 5.30440 5.65852 5.69051 5.79218 5.86285 5.89199 6.05975 6.27078 6.56381 6.82754 7.17687 7.29912 7.41361 8.85871 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.010742 B = 0.009879 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.956193 B = 2833.685930 C = 4475.517772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.183 4.183 3 C 0.142 3.858 4 N -0.595 5.595 5 C 0.247 3.753 6 C -0.541 4.541 7 H 0.059 0.941 8 C 0.021 3.979 9 N -0.919 5.919 10 Si 0.954 3.046 11 H -0.263 1.263 12 H -0.281 1.281 13 H -0.282 1.282 14 C 0.523 3.477 15 O -0.582 6.582 16 C -0.107 4.107 17 H 0.104 0.896 18 C -0.110 4.110 19 C 0.112 3.888 20 N -0.706 5.706 21 C 0.528 3.472 22 O -0.604 6.604 23 C -0.118 4.118 24 H 0.115 0.885 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.032 0.968 30 H 0.020 0.980 31 H 0.266 0.734 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.408 0.592 37 H 0.104 0.896 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.746 5.224 5.633 10.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.202 4.202 3 C 0.019 3.981 4 N -0.324 5.324 5 C 0.126 3.874 6 C -0.580 4.580 7 H 0.077 0.923 8 C -0.180 4.180 9 N -0.558 5.558 10 Si 0.779 3.221 11 H -0.187 1.187 12 H -0.206 1.206 13 H -0.208 1.208 14 C 0.312 3.688 15 O -0.464 6.464 16 C -0.129 4.129 17 H 0.122 0.878 18 C -0.148 4.148 19 C -0.011 4.011 20 N -0.357 5.357 21 C 0.316 3.684 22 O -0.487 6.487 23 C -0.158 4.158 24 H 0.133 0.867 25 H 0.118 0.882 26 H 0.121 0.879 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.139 0.861 35 H 0.096 0.904 36 H 0.245 0.755 37 H 0.122 0.878 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.018 4.821 5.688 10.949 hybrid contribution 1.192 0.247 -0.346 1.265 sum -6.827 5.068 5.341 10.041 Atomic orbital electron populations 1.23948 0.95153 1.02643 0.98383 1.23258 0.96814 0.98290 1.01885 1.20520 0.92090 0.95959 0.89503 1.48243 1.12921 1.61838 1.09407 1.19232 0.76360 0.94630 0.97199 1.21680 0.92732 0.93866 1.49691 0.92259 1.25662 0.99419 0.98144 0.94734 1.70030 1.13750 1.22274 1.49793 0.85561 0.78811 0.79977 0.77707 1.18749 1.20642 1.20832 1.20577 0.88202 0.75961 0.84086 1.90570 1.19503 1.52589 1.83710 1.21416 1.00348 0.96743 0.94357 0.87764 1.21707 0.98277 1.00113 0.94715 1.21662 0.96596 0.84027 0.98864 1.45372 1.56979 1.08168 1.25132 1.20021 0.79427 0.82938 0.86023 1.90711 1.49907 1.38751 1.69303 1.21518 1.02021 0.98110 0.94158 0.86693 0.88220 0.87853 0.90627 0.89896 0.95053 0.96192 0.92479 0.88755 0.90340 0.86145 0.90385 0.75527 0.87780 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.37 14.32 67.78 0.97 -3.40 16 2 C -0.18 -5.79 9.83 25.65 0.25 -5.54 16 3 C 0.14 5.04 5.76 85.63 0.49 5.53 16 4 N -0.59 -23.95 2.46 -830.51 -2.05 -25.99 16 5 C 0.25 11.39 4.84 85.63 0.41 11.80 16 6 C -0.54 -26.77 8.07 25.60 0.21 -26.56 16 7 H 0.06 2.93 7.81 -2.91 -0.02 2.90 16 8 C 0.02 1.07 5.46 84.65 0.46 1.53 16 9 N -0.92 -50.26 13.29 21.45 0.28 -49.97 16 10 Si 0.95 40.51 29.54 68.60 2.03 42.54 16 11 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 12 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 14 C 0.52 20.20 6.75 87.66 0.59 20.79 16 15 O -0.58 -23.65 15.84 -3.01 -0.05 -23.70 16 16 C -0.11 -3.64 1.77 -11.40 -0.02 -3.66 16 17 H 0.10 4.00 6.42 -2.39 -0.02 3.98 16 18 C -0.11 -2.79 4.67 30.69 0.14 -2.65 16 19 C 0.11 2.17 7.17 86.50 0.62 2.79 16 20 N -0.71 -17.66 5.45 -467.30 -2.55 -20.21 16 21 C 0.53 18.12 7.71 87.71 0.68 18.79 16 22 O -0.60 -25.45 17.78 -3.04 -0.05 -25.51 16 23 C -0.12 -4.10 5.14 29.70 0.15 -3.95 16 24 H 0.11 2.54 8.06 -2.91 -0.02 2.52 16 25 H 0.10 2.58 7.84 -2.91 -0.02 2.56 16 26 H 0.10 3.30 8.06 -2.91 -0.02 3.28 16 27 H 0.08 2.64 7.21 -2.39 -0.02 2.62 16 28 H 0.08 2.92 8.05 -2.39 -0.02 2.90 16 29 H 0.03 1.53 4.93 -2.39 -0.01 1.52 16 30 H 0.02 0.99 8.02 -2.39 -0.02 0.97 16 31 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 32 H 0.09 2.29 8.14 -2.39 -0.02 2.28 16 33 H 0.08 1.98 8.11 -2.39 -0.02 1.97 16 34 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.41 8.61 8.80 -92.71 -0.82 7.80 16 37 H 0.10 3.40 8.09 -2.38 -0.02 3.38 16 38 H 0.09 3.61 5.90 -2.38 -0.01 3.59 16 Total: -1.00 -64.32 317.21 2.83 -61.49 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.25 Total: 25.86 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 4.96 Total: 15.48 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -4.31 Total: -96.17 kcal Atomic # 8 Polarization: -49.10 SS G_CDS: -0.10 Total: -49.21 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -64.32 2.83 -61.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359433353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.343 kcal (2) G-P(sol) polarization free energy of solvation -64.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds