Wall clock time and date at job start Thu Apr 9 2020 13:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50707 * 119.99861 * 2 1 4 4 N 1.46496 * 109.46855 * 123.18402 * 3 2 1 5 5 C 1.46499 * 120.00129 * 95.54771 * 4 3 2 6 6 C 1.50699 * 109.47559 * 276.17447 * 5 4 3 7 7 H 1.08000 * 119.99830 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00099 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99805 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 120.00048 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46838 * 90.00655 * 10 8 6 12 12 H 1.48489 * 109.47341 * 330.00335 * 10 8 6 13 13 H 1.48507 * 109.46937 * 210.00232 * 10 8 6 14 14 C 1.34776 * 120.00105 * 275.54735 * 4 3 2 15 15 O 1.21283 * 119.99936 * 4.78716 * 14 4 3 16 16 C 1.50698 * 119.99952 * 184.77901 * 14 4 3 17 17 H 1.09000 * 109.67222 * 307.26217 * 16 14 4 18 18 C 1.53346 * 109.67065 * 186.76305 * 16 14 4 19 19 C 1.52900 * 108.69062 * 172.78629 * 18 16 14 20 20 N 1.45751 * 110.52353 * 50.66794 * 19 18 16 21 21 C 1.33358 * 124.10528 * 340.98880 * 20 19 18 22 22 O 1.21276 * 118.24622 * 182.22179 * 21 20 19 23 23 C 1.50181 * 123.50735 * 2.19628 * 21 20 19 24 24 H 1.07995 * 120.00129 * 185.13663 * 1 2 3 25 25 H 1.07998 * 119.99750 * 5.13365 * 1 2 3 26 26 H 1.07999 * 119.99823 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.47154 * 3.18397 * 3 2 1 28 28 H 1.09003 * 109.46662 * 243.18380 * 3 2 1 29 29 H 1.08996 * 109.47466 * 156.16550 * 5 4 3 30 30 H 1.09008 * 109.46720 * 36.17234 * 5 4 3 31 31 H 0.97005 * 120.00104 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.60905 * 292.49465 * 18 16 14 33 33 H 1.09002 * 109.60774 * 52.98306 * 18 16 14 34 34 H 1.08999 * 109.25107 * 290.36588 * 19 18 16 35 35 H 1.09004 * 109.14754 * 170.90763 * 19 18 16 36 36 H 0.96998 * 117.95249 * 160.96330 * 20 19 18 37 37 H 1.08998 * 109.40175 * 222.29105 * 23 21 20 38 38 H 1.08999 * 109.39784 * 102.54369 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9623 1.3501 1.1560 5 6 4.3655 0.9554 1.0086 6 6 4.4813 -0.5424 1.1274 7 1 3.5981 -1.1406 1.2962 8 6 5.7149 -1.1490 1.0216 9 7 5.8159 -2.4561 1.1257 10 14 7.2426 -0.1143 0.7303 11 1 7.8271 0.2838 2.0361 12 1 6.8775 1.1015 -0.0400 13 1 8.2377 -0.9060 -0.0367 14 6 2.4984 1.7544 2.3550 15 8 1.3190 1.9979 2.4982 16 6 3.4452 1.9038 3.5179 17 1 4.0130 0.9827 3.6494 18 6 2.6514 2.2077 4.7941 19 6 3.6088 2.1762 5.9859 20 7 4.7761 3.0092 5.7257 21 6 5.1597 3.4002 4.5099 22 8 6.1730 4.0594 4.4120 23 6 4.4044 3.0674 3.2552 24 1 -0.5400 -0.9315 0.0837 25 1 -0.5399 0.9316 -0.0837 26 1 1.8500 -0.9353 -0.0004 27 1 1.3566 2.1328 0.0571 28 1 2.6467 1.3880 -0.9172 29 1 4.9601 1.4290 1.7898 30 1 4.7312 1.2718 0.0316 31 1 6.6838 -2.8830 1.0509 32 1 2.1981 3.1960 4.7164 33 1 1.8738 1.4558 4.9290 34 1 3.9306 1.1496 6.1613 35 1 3.0910 2.5475 6.8704 36 1 5.3071 3.2975 6.4845 37 1 5.1088 2.7864 2.4723 38 1 3.8357 3.9396 2.9329 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359433354.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:09:24 Heat of formation + Delta-G solvation = -51.036007 kcal Electronic energy + Delta-G solvation = -21115.871289 eV Core-core repulsion = 17958.840089 eV Total energy + Delta-G solvation = -3157.031199 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.51169 -39.05875 -36.28782 -35.49428 -33.73696 -32.70835 -32.09406 -29.56859 -28.15283 -26.38017 -24.56955 -22.88692 -22.38283 -19.65702 -19.05241 -18.56337 -17.20423 -17.09053 -16.64315 -16.05930 -15.61825 -15.05687 -14.68273 -14.28460 -14.21649 -14.03203 -13.48061 -13.33953 -13.02195 -12.62740 -12.51251 -12.18309 -11.72112 -11.62222 -11.47522 -11.03246 -10.91151 -10.82568 -10.70702 -10.56296 -10.27163 -9.99023 -9.59214 -9.23850 -9.04958 -8.81259 -8.72789 -7.87893 -6.26209 -4.28299 2.68429 2.73981 3.16270 3.17698 3.23892 3.28166 3.36074 3.80071 4.23367 4.62355 4.77140 4.85442 4.92776 5.04113 5.30684 5.40009 5.41039 5.46758 5.58403 5.75276 5.80538 5.85415 5.90831 6.08300 6.10345 6.31050 6.35908 6.44530 6.61536 6.80412 7.14748 7.16895 7.29667 7.35829 7.39571 8.02182 8.28172 8.34692 8.73302 8.82367 9.32973 10.85901 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.012508 B = 0.009571 C = 0.006296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.957676 B = 2924.917876 C = 4446.171276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C 0.151 3.849 4 N -0.585 5.585 5 C 0.197 3.803 6 C -0.542 4.542 7 H 0.081 0.919 8 C 0.078 3.922 9 N -0.889 5.889 10 Si 0.864 3.136 11 H -0.271 1.271 12 H -0.263 1.263 13 H -0.282 1.282 14 C 0.525 3.475 15 O -0.560 6.560 16 C -0.111 4.111 17 H 0.116 0.884 18 C -0.114 4.114 19 C 0.109 3.891 20 N -0.720 5.720 21 C 0.528 3.472 22 O -0.561 6.561 23 C -0.133 4.133 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.119 0.881 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.034 0.966 31 H 0.267 0.733 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.397 0.603 37 H 0.116 0.884 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.248 8.170 5.152 10.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.169 4.169 3 C 0.028 3.972 4 N -0.314 5.314 5 C 0.076 3.924 6 C -0.580 4.580 7 H 0.099 0.901 8 C -0.126 4.126 9 N -0.526 5.526 10 Si 0.690 3.310 11 H -0.196 1.196 12 H -0.187 1.187 13 H -0.208 1.208 14 C 0.313 3.687 15 O -0.440 6.440 16 C -0.133 4.133 17 H 0.134 0.866 18 C -0.152 4.152 19 C -0.015 4.015 20 N -0.372 5.372 21 C 0.315 3.685 22 O -0.440 6.440 23 C -0.172 4.172 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.137 0.863 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.232 0.768 37 H 0.134 0.866 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.319 8.405 4.938 11.105 hybrid contribution 1.154 0.108 0.112 1.165 sum -4.165 8.514 5.051 10.739 Atomic orbital electron populations 1.23663 0.95914 1.01026 1.02581 1.23455 0.95879 0.99759 0.97809 1.20365 0.92688 0.95266 0.88855 1.47905 1.12132 1.63247 1.08116 1.20131 0.77270 0.97199 0.97789 1.21370 0.95584 0.89791 1.51252 0.90056 1.24859 0.98662 0.94783 0.94247 1.69881 1.25054 1.08738 1.48965 0.87032 0.83611 0.80946 0.79389 1.19648 1.18708 1.20758 1.20162 0.88249 0.76598 0.83687 1.90617 1.17092 1.52716 1.83553 1.21403 0.96798 1.00867 0.94215 0.86563 1.21681 0.97477 1.04108 0.91898 1.21462 0.86178 0.95257 0.98607 1.45463 1.30028 1.53226 1.08517 1.20073 0.84801 0.78438 0.85197 1.90741 1.25817 1.40533 1.86866 1.21856 0.99397 0.99511 0.96467 0.89099 0.89200 0.86325 0.91011 0.90067 0.94282 0.94811 0.92312 0.90571 0.88911 0.91121 0.90354 0.76790 0.86605 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 14.31 29.01 0.42 -2.67 16 2 C -0.15 -2.69 9.76 -36.02 -0.35 -3.04 16 3 C 0.15 2.64 5.79 -5.19 -0.03 2.61 16 4 N -0.58 -11.21 2.46 -176.43 -0.43 -11.64 16 5 C 0.20 4.12 3.88 -5.19 -0.02 4.10 16 6 C -0.54 -13.63 9.93 -34.44 -0.34 -13.97 16 7 H 0.08 2.28 7.22 -52.49 -0.38 1.90 16 8 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 9 N -0.89 -25.25 13.96 55.43 0.77 -24.48 16 10 Si 0.86 19.68 27.47 -169.99 -4.67 15.01 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 C 0.53 9.75 6.89 -10.99 -0.08 9.68 16 15 O -0.56 -11.28 15.71 5.55 0.09 -11.19 16 16 C -0.11 -1.77 1.73 -91.56 -0.16 -1.92 16 17 H 0.12 2.02 7.63 -51.93 -0.40 1.63 16 18 C -0.11 -1.44 4.65 -26.60 -0.12 -1.57 16 19 C 0.11 1.12 7.17 -4.50 -0.03 1.09 16 20 N -0.72 -8.82 5.45 -61.40 -0.33 -9.16 16 21 C 0.53 8.31 7.71 -11.87 -0.09 8.22 16 22 O -0.56 -10.81 17.78 5.56 0.10 -10.72 16 23 C -0.13 -2.04 4.99 -28.10 -0.14 -2.18 16 24 H 0.09 1.33 8.06 -52.49 -0.42 0.91 16 25 H 0.09 1.33 7.85 -52.49 -0.41 0.92 16 26 H 0.12 2.39 7.26 -52.49 -0.38 2.01 16 27 H 0.07 1.19 7.32 -51.93 -0.38 0.81 16 28 H 0.08 1.31 7.90 -51.93 -0.41 0.90 16 29 H 0.04 0.79 3.33 -51.93 -0.17 0.62 16 30 H 0.03 0.70 7.02 -51.92 -0.36 0.34 16 31 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 32 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 33 H 0.09 1.20 8.01 -51.93 -0.42 0.78 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.40 4.19 8.80 -40.82 -0.36 3.83 16 37 H 0.12 1.92 5.57 -51.93 -0.29 1.63 16 38 H 0.10 1.43 8.09 -51.93 -0.42 1.01 16 LS Contribution 312.65 15.07 4.71 4.71 Total: -1.00 -31.17 312.65 -6.05 -37.22 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.24 Total: 7.92 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -1.05 Total: 2.31 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.01 Total: -45.27 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: 0.19 Total: -21.91 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.67 Total: 15.01 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.17 -6.05 -37.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359433354.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.817 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds