Wall clock time and date at job start Thu Apr 9 2020 13:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50707 * 119.99861 * 2 1 4 4 N 1.46496 * 109.46855 * 123.18402 * 3 2 1 5 5 C 1.46499 * 120.00129 * 95.54771 * 4 3 2 6 6 C 1.50699 * 109.47559 * 276.17447 * 5 4 3 7 7 H 1.08000 * 119.99830 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00099 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99805 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 120.00048 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46838 * 90.00655 * 10 8 6 12 12 H 1.48489 * 109.47341 * 330.00335 * 10 8 6 13 13 H 1.48507 * 109.46937 * 210.00232 * 10 8 6 14 14 C 1.34776 * 120.00105 * 275.54735 * 4 3 2 15 15 O 1.21283 * 119.99936 * 4.78716 * 14 4 3 16 16 C 1.50698 * 119.99952 * 184.77901 * 14 4 3 17 17 H 1.09000 * 109.67222 * 307.26217 * 16 14 4 18 18 C 1.53346 * 109.67065 * 186.76305 * 16 14 4 19 19 C 1.52900 * 108.69062 * 172.78629 * 18 16 14 20 20 N 1.45751 * 110.52353 * 50.66794 * 19 18 16 21 21 C 1.33358 * 124.10528 * 340.98880 * 20 19 18 22 22 O 1.21276 * 118.24622 * 182.22179 * 21 20 19 23 23 C 1.50181 * 123.50735 * 2.19628 * 21 20 19 24 24 H 1.07995 * 120.00129 * 185.13663 * 1 2 3 25 25 H 1.07998 * 119.99750 * 5.13365 * 1 2 3 26 26 H 1.07999 * 119.99823 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.47154 * 3.18397 * 3 2 1 28 28 H 1.09003 * 109.46662 * 243.18380 * 3 2 1 29 29 H 1.08996 * 109.47466 * 156.16550 * 5 4 3 30 30 H 1.09008 * 109.46720 * 36.17234 * 5 4 3 31 31 H 0.97005 * 120.00104 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.60905 * 292.49465 * 18 16 14 33 33 H 1.09002 * 109.60774 * 52.98306 * 18 16 14 34 34 H 1.08999 * 109.25107 * 290.36588 * 19 18 16 35 35 H 1.09004 * 109.14754 * 170.90763 * 19 18 16 36 36 H 0.96998 * 117.95249 * 160.96330 * 20 19 18 37 37 H 1.08998 * 109.40175 * 222.29105 * 23 21 20 38 38 H 1.08999 * 109.39784 * 102.54369 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9623 1.3501 1.1560 5 6 4.3655 0.9554 1.0086 6 6 4.4813 -0.5424 1.1274 7 1 3.5981 -1.1406 1.2962 8 6 5.7149 -1.1490 1.0216 9 7 5.8159 -2.4561 1.1257 10 14 7.2426 -0.1143 0.7303 11 1 7.8271 0.2838 2.0361 12 1 6.8775 1.1015 -0.0400 13 1 8.2377 -0.9060 -0.0367 14 6 2.4984 1.7544 2.3550 15 8 1.3190 1.9979 2.4982 16 6 3.4452 1.9038 3.5179 17 1 4.0130 0.9827 3.6494 18 6 2.6514 2.2077 4.7941 19 6 3.6088 2.1762 5.9859 20 7 4.7761 3.0092 5.7257 21 6 5.1597 3.4002 4.5099 22 8 6.1730 4.0594 4.4120 23 6 4.4044 3.0674 3.2552 24 1 -0.5400 -0.9315 0.0837 25 1 -0.5399 0.9316 -0.0837 26 1 1.8500 -0.9353 -0.0004 27 1 1.3566 2.1328 0.0571 28 1 2.6467 1.3880 -0.9172 29 1 4.9601 1.4290 1.7898 30 1 4.7312 1.2718 0.0316 31 1 6.6838 -2.8830 1.0509 32 1 2.1981 3.1960 4.7164 33 1 1.8738 1.4558 4.9290 34 1 3.9306 1.1496 6.1613 35 1 3.0910 2.5475 6.8704 36 1 5.3071 3.2975 6.4845 37 1 5.1088 2.7864 2.4723 38 1 3.8357 3.9396 2.9329 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359433354.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:09:24 Heat of formation + Delta-G solvation = -72.774736 kcal Electronic energy + Delta-G solvation = -21116.813951 eV Core-core repulsion = 17958.840089 eV Total energy + Delta-G solvation = -3157.973861 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.78693 -40.44239 -37.54551 -36.98240 -35.19600 -34.39666 -33.54007 -30.67418 -29.95977 -27.74915 -25.80747 -24.39309 -23.82572 -21.04277 -20.21055 -20.00375 -18.97626 -18.37772 -18.11761 -17.36120 -16.97664 -16.46931 -16.13562 -15.82746 -15.55674 -15.17817 -14.86957 -14.60398 -14.59201 -14.20326 -14.01391 -13.73389 -13.26150 -12.84733 -12.73249 -12.56831 -12.36104 -12.25316 -12.02187 -11.99645 -11.94069 -11.54743 -11.32208 -10.80016 -10.62930 -10.16353 -10.07846 -9.47084 -8.30234 -6.35518 1.29761 1.37171 1.41260 1.46470 1.52297 1.71125 2.31436 2.32006 2.38584 3.03973 3.40077 3.65047 3.68592 3.79081 4.08092 4.14011 4.25877 4.33613 4.41655 4.47680 4.54195 4.72287 4.73434 4.78617 4.80553 4.95782 5.04316 5.10066 5.23233 5.44929 5.65587 5.76680 5.83209 5.89271 6.19432 6.26023 6.61796 6.72107 7.15476 7.22276 7.33643 8.85488 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.012508 B = 0.009571 C = 0.006296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.957676 B = 2924.917876 C = 4446.171276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.177 4.177 3 C 0.148 3.852 4 N -0.591 5.591 5 C 0.205 3.795 6 C -0.533 4.533 7 H 0.040 0.960 8 C 0.025 3.975 9 N -0.940 5.940 10 Si 0.923 3.077 11 H -0.270 1.270 12 H -0.237 1.237 13 H -0.285 1.285 14 C 0.522 3.478 15 O -0.574 6.574 16 C -0.108 4.108 17 H 0.098 0.902 18 C -0.109 4.109 19 C 0.111 3.889 20 N -0.707 5.707 21 C 0.525 3.475 22 O -0.601 6.601 23 C -0.128 4.128 24 H 0.102 0.898 25 H 0.108 0.892 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.044 0.956 31 H 0.267 0.733 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.408 0.592 37 H 0.103 0.897 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.676 10.063 5.957 12.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.196 4.196 3 C 0.025 3.975 4 N -0.320 5.320 5 C 0.083 3.917 6 C -0.571 4.571 7 H 0.058 0.942 8 C -0.174 4.174 9 N -0.579 5.579 10 Si 0.747 3.253 11 H -0.195 1.195 12 H -0.160 1.160 13 H -0.211 1.211 14 C 0.310 3.690 15 O -0.455 6.455 16 C -0.130 4.130 17 H 0.116 0.884 18 C -0.147 4.147 19 C -0.012 4.012 20 N -0.357 5.357 21 C 0.313 3.687 22 O -0.484 6.484 23 C -0.167 4.167 24 H 0.121 0.879 25 H 0.126 0.874 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.137 0.863 36 H 0.245 0.755 37 H 0.121 0.879 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.790 10.303 5.768 13.150 hybrid contribution 1.103 -0.560 -0.116 1.243 sum -4.686 9.742 5.652 12.199 Atomic orbital electron populations 1.23875 0.95138 1.02391 0.99408 1.23281 0.96658 0.98795 1.00876 1.20507 0.92885 0.95263 0.88799 1.47963 1.11686 1.63232 1.09082 1.19953 0.78805 0.94253 0.98675 1.21539 0.94007 0.91878 1.49707 0.94153 1.25629 1.01855 0.95642 0.94264 1.70028 1.25793 1.10788 1.51334 0.86069 0.79586 0.80138 0.79510 1.19475 1.16019 1.21098 1.20624 0.88486 0.75881 0.83971 1.90596 1.17793 1.53375 1.83772 1.21395 0.96595 1.00286 0.94705 0.88422 1.21684 0.97616 1.04292 0.91141 1.21637 0.85149 0.95597 0.98807 1.45415 1.30310 1.52180 1.07844 1.20077 0.84280 0.78238 0.86110 1.90726 1.27494 1.42665 1.87508 1.21773 0.98978 0.99692 0.96291 0.87948 0.87418 0.89587 0.89708 0.89012 0.92804 0.93814 0.92396 0.89973 0.89072 0.90488 0.86308 0.75489 0.87869 0.86672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.20 14.31 67.78 0.97 -4.23 16 2 C -0.18 -6.37 9.76 25.65 0.25 -6.12 16 3 C 0.15 5.04 5.79 85.64 0.50 5.54 16 4 N -0.59 -22.28 2.46 -830.50 -2.04 -24.32 16 5 C 0.20 8.44 3.88 85.63 0.33 8.77 16 6 C -0.53 -27.36 9.93 25.60 0.25 -27.11 16 7 H 0.04 2.37 7.22 -2.91 -0.02 2.35 16 8 C 0.03 1.35 5.47 84.65 0.46 1.81 16 9 N -0.94 -54.99 13.96 21.45 0.30 -54.69 16 10 Si 0.92 40.28 27.47 68.60 1.88 42.16 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.24 -9.30 6.54 99.48 0.65 -8.65 16 13 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 14 C 0.52 18.85 6.89 87.66 0.60 19.46 16 15 O -0.57 -22.32 15.71 -3.04 -0.05 -22.36 16 16 C -0.11 -3.30 1.73 -11.40 -0.02 -3.32 16 17 H 0.10 3.36 7.63 -2.39 -0.02 3.34 16 18 C -0.11 -2.52 4.65 30.68 0.14 -2.38 16 19 C 0.11 1.91 7.17 86.49 0.62 2.53 16 20 N -0.71 -15.41 5.45 -467.35 -2.55 -17.95 16 21 C 0.53 15.62 7.71 87.71 0.68 16.30 16 22 O -0.60 -22.47 17.78 -3.02 -0.05 -22.52 16 23 C -0.13 -3.72 4.99 29.71 0.15 -3.57 16 24 H 0.10 2.85 8.06 -2.91 -0.02 2.83 16 25 H 0.11 2.93 7.85 -2.91 -0.02 2.90 16 26 H 0.09 3.65 7.26 -2.91 -0.02 3.63 16 27 H 0.08 2.67 7.32 -2.39 -0.02 2.65 16 28 H 0.09 2.87 7.90 -2.39 -0.02 2.85 16 29 H 0.05 2.11 3.33 -2.39 -0.01 2.10 16 30 H 0.04 1.74 7.02 -2.38 -0.02 1.73 16 31 H 0.27 14.73 8.31 -92.70 -0.77 13.96 16 32 H 0.08 1.83 8.12 -2.39 -0.02 1.81 16 33 H 0.09 2.17 8.01 -2.39 -0.02 2.15 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.41 7.46 8.80 -92.71 -0.82 6.64 16 37 H 0.10 3.27 5.57 -2.39 -0.01 3.26 16 38 H 0.12 3.02 8.09 -2.39 -0.02 3.00 16 Total: -1.00 -68.38 312.65 2.63 -65.75 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.20 Total: 26.25 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 4.94 Total: 7.69 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -4.29 Total: -96.96 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -0.10 Total: -44.89 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.88 Total: 42.16 kcal Total: -68.38 2.63 -65.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359433354.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.025 kcal (2) G-P(sol) polarization free energy of solvation -68.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds