Wall clock time and date at job start Thu Apr 9 2020 13:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47075 * 2 1 4 4 H 1.09001 * 109.47012 * 177.97578 * 3 2 1 5 5 C 1.50690 * 109.47277 * 57.97103 * 3 2 1 6 6 H 1.08001 * 120.00448 * 239.99805 * 5 3 2 7 7 C 1.37883 * 120.00063 * 60.00123 * 5 3 2 8 8 N 1.31514 * 119.99599 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00035 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47361 * 60.00133 * 9 7 5 11 11 H 1.48501 * 109.46870 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47361 * 299.99826 * 9 7 5 13 13 N 1.46904 * 109.47101 * 297.96769 * 3 2 1 14 14 C 1.46895 * 111.00250 * 273.75475 * 13 3 2 15 15 C 1.50706 * 109.47003 * 174.92508 * 14 13 3 16 16 C 1.34431 * 125.45406 * 264.69252 * 15 14 13 17 17 C 1.46746 * 106.37318 * 179.86591 * 16 15 14 18 18 C 1.47114 * 127.02340 * 180.13261 * 17 16 15 19 19 O 1.21549 * 119.99803 * 180.31350 * 18 17 16 20 20 O 1.34784 * 119.99878 * 0.30935 * 18 17 16 21 21 C 1.37843 * 105.95246 * 0.39268 * 17 16 15 22 22 C 1.50697 * 125.89837 * 179.73045 * 21 17 16 23 23 N 1.34634 * 108.20369 * 359.75993 * 21 17 16 24 24 H 0.96994 * 124.80717 * 179.97438 * 23 21 17 25 25 H 1.09007 * 109.46755 * 294.44774 * 1 2 3 26 26 H 1.09001 * 109.47164 * 174.45361 * 1 2 3 27 27 H 1.08996 * 109.47665 * 54.44510 * 1 2 3 28 28 H 1.08996 * 109.47653 * 120.00162 * 2 1 3 29 29 H 1.09005 * 109.46925 * 239.99917 * 2 1 3 30 30 H 0.97000 * 119.99738 * 179.97438 * 8 7 5 31 31 H 1.00900 * 110.99890 * 149.79364 * 13 3 2 32 32 H 1.09005 * 109.47061 * 294.91779 * 14 13 3 33 33 H 1.08997 * 109.47274 * 54.92294 * 14 13 3 34 34 H 1.08009 * 126.81362 * 359.97042 * 16 15 14 35 35 H 0.96708 * 116.99767 * 179.97438 * 20 18 17 36 36 H 1.08995 * 109.46897 * 270.01247 * 22 21 17 37 37 H 1.09001 * 109.47179 * 30.00914 * 22 21 17 38 38 H 1.08998 * 109.47100 * 150.01604 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0363 5 6 1.4970 2.1673 1.2044 6 1 0.8800 3.0440 1.0744 7 6 1.7881 1.7111 2.4727 8 7 2.5391 0.6432 2.6311 9 14 1.1156 2.6100 3.9657 10 1 -0.3685 2.6103 3.9165 11 1 1.5692 1.9239 5.2022 12 1 1.6112 4.0098 3.9655 13 7 1.5908 2.1207 -1.2233 14 6 2.5278 1.8857 -2.3299 15 6 1.9734 2.4896 -3.5944 16 6 1.2639 1.8310 -4.5272 17 6 0.9360 2.8129 -5.5673 18 6 0.1668 2.5756 -6.7986 19 8 -0.0256 3.4865 -7.5800 20 8 -0.3246 1.3481 -7.0602 21 6 1.5011 4.0016 -5.1577 22 6 1.4414 5.3109 -5.9015 23 7 2.1160 3.7908 -3.9787 24 1 2.5933 4.4680 -3.4743 25 1 -0.3633 0.4253 0.9356 26 1 -0.3633 -1.0229 -0.0993 27 1 -0.3634 0.5975 -0.8360 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 2.7442 0.3225 3.5232 31 1 1.4614 3.1083 -1.0624 32 1 3.4876 2.3472 -2.0974 33 1 2.6644 0.8133 -2.4689 34 1 0.9882 0.7868 -4.5129 35 1 -0.8238 1.2409 -7.8815 36 1 2.2943 5.3846 -6.5761 37 1 0.5173 5.3597 -6.4775 38 1 1.4695 6.1352 -5.1889 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380048905.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:09:28 Heat of formation + Delta-G solvation = -62.055381 kcal Electronic energy + Delta-G solvation = -19944.672996 eV Core-core repulsion = 16787.163960 eV Total energy + Delta-G solvation = -3157.509035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.25558 -39.48288 -36.37807 -35.87110 -33.15033 -31.56515 -31.10286 -30.42865 -27.72311 -25.92046 -24.28392 -23.18204 -22.69119 -20.37220 -19.56975 -19.07174 -17.83676 -16.90479 -16.07872 -15.58021 -15.55655 -14.98801 -14.58019 -14.22723 -13.76647 -13.52695 -13.29953 -13.10760 -12.92839 -12.57649 -12.33494 -12.15071 -11.87172 -11.45932 -11.42356 -11.37612 -10.94958 -10.82957 -10.43178 -10.40889 -10.14810 -9.78142 -9.39133 -8.86426 -8.80672 -8.52876 -7.97536 -7.34287 -6.07304 -4.13213 1.52823 2.51008 2.98653 3.26620 3.32166 3.34539 3.40251 3.53467 4.35730 4.75832 4.99807 5.07439 5.23715 5.37733 5.44658 5.54600 5.58956 5.73488 5.86908 6.00378 6.10171 6.35617 6.50924 6.61944 6.70060 6.83489 6.87689 7.08809 7.21368 7.24156 7.44324 7.48676 7.69816 7.73711 7.78939 8.12085 8.18119 8.29681 8.55851 8.94363 9.51751 10.98515 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.029787 B = 0.004027 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.790529 B = 6950.709915 C = 7378.251643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.102 4.102 3 C 0.216 3.784 4 H 0.001 0.999 5 C -0.515 4.515 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.894 3.106 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.679 5.679 14 C 0.124 3.876 15 C 0.033 3.967 16 C -0.129 4.129 17 C -0.237 4.237 18 C 0.562 3.438 19 O -0.540 6.540 20 O -0.512 6.512 21 C 0.114 3.886 22 C -0.095 4.095 23 N -0.539 5.539 24 H 0.416 0.584 25 H 0.051 0.949 26 H 0.013 0.987 27 H 0.048 0.952 28 H 0.085 0.915 29 H 0.011 0.989 30 H 0.262 0.738 31 H 0.329 0.671 32 H 0.027 0.973 33 H 0.090 0.910 34 H 0.150 0.850 35 H 0.407 0.593 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.560 4.446 -14.588 15.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.140 4.140 3 C 0.109 3.891 4 H 0.019 0.981 5 C -0.554 4.554 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.310 5.310 14 C -0.006 4.006 15 C -0.076 4.076 16 C -0.152 4.152 17 C -0.245 4.245 18 C 0.409 3.591 19 O -0.432 6.432 20 O -0.322 6.322 21 C -0.006 4.006 22 C -0.153 4.153 23 N -0.134 5.134 24 H 0.253 0.747 25 H 0.070 0.930 26 H 0.032 0.968 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.146 0.854 32 H 0.045 0.955 33 H 0.109 0.891 34 H 0.167 0.833 35 H 0.264 0.736 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.644 4.129 -14.329 14.926 hybrid contribution 0.262 1.158 0.893 1.485 sum -0.382 5.287 -13.436 14.444 Atomic orbital electron populations 1.21440 0.97400 0.97254 1.01613 1.21428 0.95222 0.97989 0.99397 1.19156 0.93310 0.91797 0.84837 0.98102 1.21109 1.31904 1.12069 0.90318 0.92426 1.24870 0.95011 0.94985 0.98836 1.69873 1.37182 1.22961 1.22588 0.86634 0.79507 0.79659 0.82045 1.20170 1.21297 1.20444 1.60719 1.47060 1.16097 1.07108 1.20477 0.92948 1.00268 0.86927 1.20495 1.05268 0.83113 0.98734 1.21782 1.01343 0.99145 0.92966 1.19228 1.12841 0.94816 0.97636 1.19857 0.75429 0.79270 0.84537 1.90820 1.58793 1.44365 1.49209 1.84634 1.67270 1.33814 1.46495 1.20450 0.96518 0.96073 0.87515 1.20580 1.04997 0.90432 0.99257 1.41590 1.43187 1.10889 1.17777 0.74651 0.93040 0.96786 0.93304 0.89628 0.97007 0.92833 0.85441 0.95535 0.89139 0.83274 0.73615 0.90391 0.88355 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.46 37.16 0.35 -2.31 16 2 C -0.10 -2.38 5.58 -26.73 -0.15 -2.53 16 3 C 0.22 5.09 2.30 -68.87 -0.16 4.93 16 4 H 0.00 0.03 7.84 -51.93 -0.41 -0.37 16 5 C -0.52 -13.29 7.34 -34.44 -0.25 -13.55 16 6 H 0.06 1.48 7.60 -52.49 -0.40 1.08 16 7 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -24.37 11.34 55.43 0.63 -23.74 16 9 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.68 -13.32 5.50 -109.22 -0.60 -13.92 16 14 C 0.12 2.04 5.97 -4.98 -0.03 2.01 16 15 C 0.03 0.48 6.67 -81.89 -0.55 -0.06 16 16 C -0.13 -1.96 10.89 -37.49 -0.41 -2.37 16 17 C -0.24 -3.47 6.33 -103.00 -0.65 -4.12 16 18 C 0.56 7.93 8.32 34.33 0.29 8.22 16 19 O -0.54 -8.27 15.66 -19.30 -0.30 -8.57 16 20 O -0.51 -5.92 13.33 -40.72 -0.54 -6.46 16 21 C 0.11 1.46 7.22 -81.51 -0.59 0.88 16 22 C -0.10 -0.95 9.90 36.00 0.36 -0.60 16 23 N -0.54 -6.66 5.89 -5.20 -0.03 -6.69 16 24 H 0.42 4.05 8.96 -40.82 -0.37 3.68 16 25 H 0.05 1.23 7.37 -51.92 -0.38 0.85 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 1.06 7.50 -51.93 -0.39 0.67 16 28 H 0.09 2.23 6.12 -51.93 -0.32 1.92 16 29 H 0.01 0.25 7.43 -51.93 -0.39 -0.14 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.33 6.34 8.24 -39.29 -0.32 6.02 16 32 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 1.52 7.39 -51.93 -0.38 1.14 16 34 H 0.15 2.20 8.06 -52.48 -0.42 1.78 16 35 H 0.41 2.62 9.11 45.56 0.42 3.04 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 1.11 6.51 -51.93 -0.34 0.77 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 320.88 15.07 4.84 4.84 Total: -1.00 -30.28 320.88 -7.45 -37.73 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -4.53 Total: 9.07 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -1.89 Total: -7.87 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.00 Total: -44.34 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.85 Total: -15.04 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.28 -7.45 -37.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380048905.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.327 kcal (2) G-P(sol) polarization free energy of solvation -30.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds