Wall clock time and date at job start Thu Apr 9 2020 13:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47075 * 2 1 4 4 H 1.09001 * 109.47012 * 177.97578 * 3 2 1 5 5 C 1.50690 * 109.47277 * 57.97103 * 3 2 1 6 6 H 1.08001 * 120.00448 * 239.99805 * 5 3 2 7 7 C 1.37883 * 120.00063 * 60.00123 * 5 3 2 8 8 N 1.31514 * 119.99599 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00035 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47361 * 60.00133 * 9 7 5 11 11 H 1.48501 * 109.46870 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47361 * 299.99826 * 9 7 5 13 13 N 1.46904 * 109.47101 * 297.96769 * 3 2 1 14 14 C 1.46895 * 111.00250 * 273.75475 * 13 3 2 15 15 C 1.50706 * 109.47003 * 174.92508 * 14 13 3 16 16 C 1.34431 * 125.45406 * 264.69252 * 15 14 13 17 17 C 1.46746 * 106.37318 * 179.86591 * 16 15 14 18 18 C 1.47114 * 127.02340 * 180.13261 * 17 16 15 19 19 O 1.21549 * 119.99803 * 180.31350 * 18 17 16 20 20 O 1.34784 * 119.99878 * 0.30935 * 18 17 16 21 21 C 1.37843 * 105.95246 * 0.39268 * 17 16 15 22 22 C 1.50697 * 125.89837 * 179.73045 * 21 17 16 23 23 N 1.34634 * 108.20369 * 359.75993 * 21 17 16 24 24 H 0.96994 * 124.80717 * 179.97438 * 23 21 17 25 25 H 1.09007 * 109.46755 * 294.44774 * 1 2 3 26 26 H 1.09001 * 109.47164 * 174.45361 * 1 2 3 27 27 H 1.08996 * 109.47665 * 54.44510 * 1 2 3 28 28 H 1.08996 * 109.47653 * 120.00162 * 2 1 3 29 29 H 1.09005 * 109.46925 * 239.99917 * 2 1 3 30 30 H 0.97000 * 119.99738 * 179.97438 * 8 7 5 31 31 H 1.00900 * 110.99890 * 149.79364 * 13 3 2 32 32 H 1.09005 * 109.47061 * 294.91779 * 14 13 3 33 33 H 1.08997 * 109.47274 * 54.92294 * 14 13 3 34 34 H 1.08009 * 126.81362 * 359.97042 * 16 15 14 35 35 H 0.96708 * 116.99767 * 179.97438 * 20 18 17 36 36 H 1.08995 * 109.46897 * 270.01247 * 22 21 17 37 37 H 1.09001 * 109.47179 * 30.00914 * 22 21 17 38 38 H 1.08998 * 109.47100 * 150.01604 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0363 5 6 1.4970 2.1673 1.2044 6 1 0.8800 3.0440 1.0744 7 6 1.7881 1.7111 2.4727 8 7 2.5391 0.6432 2.6311 9 14 1.1156 2.6100 3.9657 10 1 -0.3685 2.6103 3.9165 11 1 1.5692 1.9239 5.2022 12 1 1.6112 4.0098 3.9655 13 7 1.5908 2.1207 -1.2233 14 6 2.5278 1.8857 -2.3299 15 6 1.9734 2.4896 -3.5944 16 6 1.2639 1.8310 -4.5272 17 6 0.9360 2.8129 -5.5673 18 6 0.1668 2.5756 -6.7986 19 8 -0.0256 3.4865 -7.5800 20 8 -0.3246 1.3481 -7.0602 21 6 1.5011 4.0016 -5.1577 22 6 1.4414 5.3109 -5.9015 23 7 2.1160 3.7908 -3.9787 24 1 2.5933 4.4680 -3.4743 25 1 -0.3633 0.4253 0.9356 26 1 -0.3633 -1.0229 -0.0993 27 1 -0.3634 0.5975 -0.8360 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 2.7442 0.3225 3.5232 31 1 1.4614 3.1083 -1.0624 32 1 3.4876 2.3472 -2.0974 33 1 2.6644 0.8133 -2.4689 34 1 0.9882 0.7868 -4.5129 35 1 -0.8238 1.2409 -7.8815 36 1 2.2943 5.3846 -6.5761 37 1 0.5173 5.3597 -6.4775 38 1 1.4695 6.1352 -5.1889 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380048905.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:09:25 Heat of formation + Delta-G solvation = -82.670290 kcal Electronic energy + Delta-G solvation = -19945.566925 eV Core-core repulsion = 16787.163960 eV Total energy + Delta-G solvation = -3158.402965 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -42.31950 -40.51392 -38.08364 -36.88402 -34.80143 -33.10092 -32.18547 -31.88315 -29.16517 -27.47000 -25.65967 -24.93234 -23.84725 -21.50403 -20.91502 -20.58965 -18.89353 -18.51311 -17.43142 -16.91670 -16.62889 -16.54541 -15.96315 -15.66021 -15.20601 -14.94576 -14.58344 -14.37975 -14.00785 -13.95636 -13.75281 -13.37824 -13.30271 -12.96044 -12.77350 -12.65693 -12.48065 -12.41227 -12.37210 -11.95416 -11.63298 -11.45617 -11.26964 -10.78853 -10.51804 -9.89511 -9.15059 -8.93052 -8.08060 -6.19796 0.49785 1.35544 1.43516 1.45689 1.51927 2.02686 2.31829 2.44130 2.57618 3.21278 3.68844 3.85685 3.99447 4.16974 4.41548 4.52564 4.59075 4.65762 4.73000 4.77054 4.84391 4.90565 4.98515 5.09193 5.32104 5.34339 5.42457 5.58722 5.71662 5.73255 5.77095 5.83288 5.92284 5.98938 6.30327 6.46115 6.53426 6.78722 7.02963 7.20092 7.48840 8.96542 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.029787 B = 0.004027 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.790529 B = 6950.709915 C = 7378.251643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.099 4.099 3 C 0.223 3.777 4 H -0.028 1.028 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.951 3.049 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.676 5.676 14 C 0.131 3.869 15 C 0.024 3.976 16 C -0.137 4.137 17 C -0.267 4.267 18 C 0.562 3.438 19 O -0.557 6.557 20 O -0.512 6.512 21 C 0.128 3.872 22 C -0.092 4.092 23 N -0.529 5.529 24 H 0.430 0.570 25 H 0.028 0.972 26 H 0.033 0.967 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.025 0.975 30 H 0.260 0.740 31 H 0.331 0.669 32 H 0.034 0.966 33 H 0.085 0.915 34 H 0.147 0.853 35 H 0.427 0.573 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.974 5.605 -15.327 16.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.138 4.138 3 C 0.115 3.885 4 H -0.010 1.010 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.179 4.179 8 N -0.554 5.554 9 Si 0.777 3.223 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.307 5.307 14 C 0.001 3.999 15 C -0.085 4.085 16 C -0.161 4.161 17 C -0.275 4.275 18 C 0.411 3.589 19 O -0.451 6.451 20 O -0.325 6.325 21 C 0.007 3.993 22 C -0.150 4.150 23 N -0.125 5.125 24 H 0.269 0.731 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.148 0.852 32 H 0.052 0.948 33 H 0.103 0.897 34 H 0.165 0.835 35 H 0.288 0.712 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.064 5.293 -15.086 16.023 hybrid contribution 0.396 0.779 1.034 1.354 sum -0.668 6.072 -14.052 15.323 Atomic orbital electron populations 1.21301 0.96305 0.98390 1.00491 1.21321 0.96075 0.97751 0.98619 1.18921 0.91403 0.92196 0.86013 1.01017 1.21394 1.31504 1.12035 0.91307 0.92570 1.25562 0.95347 0.95656 1.01369 1.70003 1.38312 1.24177 1.22898 0.85727 0.78788 0.78807 0.78983 1.20010 1.21324 1.19693 1.60608 1.47874 1.15991 1.06224 1.20354 0.92694 1.00300 0.86532 1.20107 1.06095 0.84233 0.98080 1.21885 1.01379 0.99397 0.93453 1.19487 1.14288 0.95484 0.98235 1.19811 0.75261 0.79613 0.84248 1.90808 1.59628 1.44967 1.49718 1.84587 1.67296 1.32579 1.47997 1.20910 0.94644 0.96673 0.87053 1.20657 1.04980 0.89636 0.99684 1.41530 1.42896 1.10377 1.17721 0.73069 0.95252 0.94836 0.92820 0.92488 0.95638 0.93042 0.85166 0.94815 0.89681 0.83518 0.71165 0.88889 0.89498 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.69 9.46 71.98 0.68 -4.01 16 2 C -0.10 -4.64 5.58 30.59 0.17 -4.47 16 3 C 0.22 10.54 2.30 44.17 0.10 10.64 16 4 H -0.03 -1.45 7.84 -2.39 -0.02 -1.47 16 5 C -0.52 -27.00 7.34 25.60 0.19 -26.81 16 6 H 0.06 2.85 7.60 -2.91 -0.02 2.83 16 7 C 0.02 1.07 5.30 84.66 0.45 1.52 16 8 N -0.91 -50.82 11.34 21.45 0.24 -50.58 16 9 Si 0.95 42.15 29.54 68.60 2.03 44.18 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 13 N -0.68 -26.08 5.50 -499.47 -2.75 -28.82 16 14 C 0.13 4.20 5.97 85.56 0.51 4.71 16 15 C 0.02 0.67 6.67 40.98 0.27 0.94 16 16 C -0.14 -4.04 10.89 23.62 0.26 -3.78 16 17 C -0.27 -7.47 6.33 -18.82 -0.12 -7.59 16 18 C 0.56 15.22 8.32 70.15 0.58 15.80 16 19 O -0.56 -16.40 15.66 19.68 0.31 -16.09 16 20 O -0.51 -11.15 13.33 -56.95 -0.76 -11.91 16 21 C 0.13 3.02 7.22 42.03 0.30 3.33 16 22 C -0.09 -1.60 9.90 71.24 0.71 -0.90 16 23 N -0.53 -11.98 5.89 -170.37 -1.00 -12.99 16 24 H 0.43 7.30 8.96 -92.71 -0.83 6.47 16 25 H 0.03 1.38 7.37 -2.38 -0.02 1.36 16 26 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.05 2.26 7.50 -2.39 -0.02 2.24 16 28 H 0.06 3.02 6.12 -2.39 -0.01 3.00 16 29 H 0.02 1.09 7.43 -2.38 -0.02 1.07 16 30 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 31 H 0.33 12.46 8.24 -89.69 -0.74 11.72 16 32 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.08 2.82 7.39 -2.39 -0.02 2.80 16 34 H 0.15 4.26 8.06 -2.91 -0.02 4.23 16 35 H 0.43 4.83 9.11 -74.05 -0.67 4.15 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 1.79 6.51 -2.39 -0.02 1.77 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -63.97 320.88 1.04 -62.94 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -1.14 Total: 23.88 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 4.10 Total: -10.61 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -3.51 Total: -92.38 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.45 Total: -28.00 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -63.97 1.04 -62.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380048905.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.735 kcal (2) G-P(sol) polarization free energy of solvation -63.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds