Wall clock time and date at job start Thu Apr 9 2020 13:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47441 * 2 1 4 4 H 1.08999 * 109.47062 * 179.82637 * 3 2 1 5 5 C 1.50702 * 109.46938 * 299.82929 * 3 2 1 6 6 H 1.08001 * 120.00050 * 120.00076 * 5 3 2 7 7 C 1.37876 * 119.99660 * 299.99613 * 5 3 2 8 8 N 1.31520 * 120.00227 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00060 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46964 * 89.99821 * 9 7 5 11 11 H 1.48496 * 109.47161 * 210.00013 * 9 7 5 12 12 H 1.48501 * 109.46716 * 330.00013 * 9 7 5 13 13 N 1.46903 * 109.46756 * 59.82383 * 3 2 1 14 14 C 1.46897 * 110.99632 * 85.93192 * 13 3 2 15 15 C 1.50710 * 109.46773 * 175.54014 * 14 13 3 16 16 C 1.34429 * 125.45233 * 94.98079 * 15 14 13 17 17 C 1.46747 * 106.36919 * 180.02562 * 16 15 14 18 18 C 1.47112 * 127.01991 * 179.97438 * 17 16 15 19 19 O 1.21558 * 119.99850 * 180.02562 * 18 17 16 20 20 O 1.34780 * 120.00443 * 0.02562 * 18 17 16 21 21 C 1.37837 * 105.95405 * 359.97438 * 17 16 15 22 22 C 1.50706 * 125.89710 * 179.97438 * 21 17 16 23 23 N 1.34625 * 108.20462 * 0.26780 * 21 17 16 24 24 H 0.97000 * 124.80756 * 179.72202 * 23 21 17 25 25 H 1.09006 * 109.46579 * 55.59037 * 1 2 3 26 26 H 1.08995 * 109.47612 * 175.58820 * 1 2 3 27 27 H 1.08996 * 109.47263 * 295.59213 * 1 2 3 28 28 H 1.09003 * 109.46992 * 239.99977 * 2 1 3 29 29 H 1.09000 * 109.46478 * 120.00389 * 2 1 3 30 30 H 0.96996 * 119.99962 * 179.97438 * 8 7 5 31 31 H 1.00905 * 110.99929 * 209.88121 * 13 3 2 32 32 H 1.09001 * 109.47096 * 55.54403 * 14 13 3 33 33 H 1.08994 * 109.47508 * 295.53918 * 14 13 3 34 34 H 1.07997 * 126.81985 * 0.02562 * 16 15 14 35 35 H 0.96699 * 117.00522 * 180.02562 * 20 18 17 36 36 H 1.08996 * 109.46528 * 90.00290 * 22 21 17 37 37 H 1.08992 * 109.46859 * 330.00622 * 22 21 17 38 38 H 1.09001 * 109.47085 * 210.00316 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1301 1.4424 0.0031 5 6 1.5413 2.1516 -1.2326 6 1 0.9201 3.0299 -1.1362 7 6 1.8779 1.6793 -2.4834 8 7 2.6340 0.6096 -2.6008 9 14 1.2602 2.5587 -4.0114 10 1 2.2400 3.5996 -4.4135 11 1 1.0982 1.5786 -5.1151 12 1 -0.0486 3.1970 -3.7200 13 7 1.5470 2.1361 1.1974 14 6 2.4393 1.9094 2.3420 15 6 1.9632 2.7218 3.5187 16 6 1.1632 2.2749 4.5023 17 6 0.9672 3.4027 5.4205 18 6 0.1660 3.4114 6.6543 19 8 0.0908 4.4238 7.3230 20 8 -0.4847 2.2970 7.0433 21 6 1.6870 4.4521 4.8908 22 6 1.7961 5.8351 5.4796 23 7 2.2704 4.0301 3.7533 24 1 2.8316 4.5781 3.1826 25 1 -0.3633 0.5808 -0.8479 26 1 -0.3634 -1.0245 -0.0790 27 1 -0.3633 0.4439 0.9268 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.8705 0.2771 -3.4808 31 1 1.4288 3.1226 1.0208 32 1 3.4528 2.2116 2.0781 33 1 2.4322 0.8515 2.6043 34 1 0.7473 1.2828 4.5978 35 1 -0.9986 2.3513 7.8606 36 1 2.6471 5.8743 6.1595 37 1 0.8831 6.0702 6.0264 38 1 1.9371 6.5608 4.6787 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380048906.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:09:30 Heat of formation + Delta-G solvation = -62.432949 kcal Electronic energy + Delta-G solvation = -19929.027030 eV Core-core repulsion = 16771.501622 eV Total energy + Delta-G solvation = -3157.525408 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.27683 -39.49512 -36.37945 -35.88095 -33.16132 -31.57643 -31.11713 -30.42918 -27.72692 -25.93173 -24.28866 -23.17701 -22.70599 -20.39433 -19.58056 -19.08648 -17.85355 -16.95432 -16.03388 -15.59490 -15.56956 -14.98290 -14.55801 -14.24270 -13.78526 -13.50690 -13.29720 -13.12651 -12.93562 -12.58915 -12.34191 -12.18056 -11.87857 -11.49425 -11.44451 -11.36765 -10.97515 -10.81795 -10.44314 -10.41497 -10.14387 -9.76447 -9.41222 -8.86159 -8.82231 -8.53390 -8.00375 -7.33668 -6.08093 -4.14210 1.51601 2.48661 2.97317 3.24419 3.32422 3.35620 3.38806 3.52070 4.35152 4.74677 4.98794 5.06647 5.22807 5.37418 5.44079 5.52699 5.57734 5.75387 5.86383 5.98406 6.11459 6.34428 6.51888 6.60853 6.66507 6.82817 6.86032 7.07339 7.20624 7.23974 7.42673 7.47046 7.70247 7.72532 7.78246 8.10930 8.18751 8.29754 8.55592 8.93871 9.50996 10.97567 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.028900 B = 0.004037 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.615071 B = 6934.789741 C = 7373.100806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.215 3.785 4 H 0.001 0.999 5 C -0.515 4.515 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.678 5.678 14 C 0.125 3.875 15 C 0.028 3.972 16 C -0.128 4.128 17 C -0.237 4.237 18 C 0.562 3.438 19 O -0.539 6.539 20 O -0.512 6.512 21 C 0.115 3.885 22 C -0.096 4.096 23 N -0.539 5.539 24 H 0.417 0.583 25 H 0.055 0.945 26 H 0.014 0.986 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.011 0.989 30 H 0.261 0.739 31 H 0.329 0.671 32 H 0.028 0.972 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.407 0.593 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.660 5.255 14.269 15.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.142 4.142 3 C 0.108 3.892 4 H 0.019 0.981 5 C -0.553 4.553 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.309 5.309 14 C -0.006 4.006 15 C -0.080 4.080 16 C -0.151 4.151 17 C -0.246 4.246 18 C 0.409 3.591 19 O -0.432 6.432 20 O -0.322 6.322 21 C -0.004 4.004 22 C -0.153 4.153 23 N -0.134 5.134 24 H 0.254 0.746 25 H 0.074 0.926 26 H 0.033 0.967 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.030 0.970 30 H 0.071 0.929 31 H 0.146 0.854 32 H 0.046 0.954 33 H 0.107 0.893 34 H 0.168 0.832 35 H 0.264 0.736 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.714 4.873 13.977 14.819 hybrid contribution 0.362 1.171 -0.909 1.526 sum -0.352 6.044 13.068 14.402 Atomic orbital electron populations 1.21453 0.97402 0.97500 1.01428 1.21437 0.95155 0.98021 0.99541 1.19196 0.92933 0.91670 0.85402 0.98117 1.21156 1.31821 1.12052 0.90291 0.92352 1.24876 0.94985 0.94960 0.98918 1.69879 1.36548 1.22573 1.23602 0.86576 0.79250 0.79346 0.82723 1.20848 1.21160 1.19839 1.60809 1.48491 1.15802 1.05830 1.20527 0.93829 0.98284 0.87911 1.20507 1.03676 0.83991 0.99845 1.21790 1.00825 0.98636 0.93879 1.19229 1.10552 0.96238 0.98552 1.19852 0.75834 0.79745 0.83663 1.90824 1.62954 1.33764 1.55615 1.84628 1.61726 1.39724 1.46147 1.20461 0.96169 0.95908 0.87908 1.20586 1.04968 0.89137 1.00604 1.41600 1.40424 1.11397 1.20019 0.74580 0.92570 0.96714 0.93807 0.89484 0.97047 0.92880 0.85430 0.95431 0.89261 0.83226 0.73601 0.90355 0.88344 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.52 37.16 0.35 -2.30 16 2 C -0.10 -2.41 5.59 -26.73 -0.15 -2.56 16 3 C 0.22 5.07 2.30 -68.86 -0.16 4.91 16 4 H 0.00 0.03 7.71 -51.93 -0.40 -0.37 16 5 C -0.51 -13.27 7.26 -34.44 -0.25 -13.52 16 6 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -24.36 11.32 55.43 0.63 -23.73 16 9 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.68 -13.34 5.64 -109.22 -0.62 -13.96 16 14 C 0.12 2.05 6.06 -4.97 -0.03 2.02 16 15 C 0.03 0.42 6.58 -81.89 -0.54 -0.12 16 16 C -0.13 -1.92 10.89 -37.49 -0.41 -2.33 16 17 C -0.24 -3.45 6.33 -103.01 -0.65 -4.10 16 18 C 0.56 7.87 8.32 34.33 0.29 8.15 16 19 O -0.54 -8.22 15.66 -19.31 -0.30 -8.52 16 20 O -0.51 -5.85 13.33 -40.71 -0.54 -6.39 16 21 C 0.12 1.48 7.22 -81.51 -0.59 0.89 16 22 C -0.10 -0.96 9.90 36.01 0.36 -0.60 16 23 N -0.54 -6.68 5.89 -5.20 -0.03 -6.71 16 24 H 0.42 4.13 8.96 -40.82 -0.37 3.77 16 25 H 0.06 1.34 7.07 -51.93 -0.37 0.97 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.04 0.92 7.74 -51.93 -0.40 0.52 16 28 H 0.09 2.28 6.06 -51.93 -0.31 1.96 16 29 H 0.01 0.24 7.61 -51.93 -0.39 -0.16 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 31 H 0.33 6.39 8.13 -39.29 -0.32 6.07 16 32 H 0.03 0.45 7.94 -51.93 -0.41 0.04 16 33 H 0.09 1.49 7.61 -51.93 -0.40 1.09 16 34 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 35 H 0.41 2.57 9.11 45.56 0.42 2.99 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 1.11 6.51 -51.93 -0.34 0.77 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 320.84 15.07 4.84 4.84 Total: -1.00 -30.24 320.84 -7.44 -37.68 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -4.52 Total: 9.15 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -1.87 Total: -7.94 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.02 Total: -44.40 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.85 Total: -14.91 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.24 -7.44 -37.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380048906.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.749 kcal (2) G-P(sol) polarization free energy of solvation -30.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds