Wall clock time and date at job start Thu Apr 9 2020 13:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47441 * 2 1 4 4 H 1.08999 * 109.47062 * 179.82637 * 3 2 1 5 5 C 1.50702 * 109.46938 * 299.82929 * 3 2 1 6 6 H 1.08001 * 120.00050 * 120.00076 * 5 3 2 7 7 C 1.37876 * 119.99660 * 299.99613 * 5 3 2 8 8 N 1.31520 * 120.00227 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00060 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46964 * 89.99821 * 9 7 5 11 11 H 1.48496 * 109.47161 * 210.00013 * 9 7 5 12 12 H 1.48501 * 109.46716 * 330.00013 * 9 7 5 13 13 N 1.46903 * 109.46756 * 59.82383 * 3 2 1 14 14 C 1.46897 * 110.99632 * 85.93192 * 13 3 2 15 15 C 1.50710 * 109.46773 * 175.54014 * 14 13 3 16 16 C 1.34429 * 125.45233 * 94.98079 * 15 14 13 17 17 C 1.46747 * 106.36919 * 180.02562 * 16 15 14 18 18 C 1.47112 * 127.01991 * 179.97438 * 17 16 15 19 19 O 1.21558 * 119.99850 * 180.02562 * 18 17 16 20 20 O 1.34780 * 120.00443 * 0.02562 * 18 17 16 21 21 C 1.37837 * 105.95405 * 359.97438 * 17 16 15 22 22 C 1.50706 * 125.89710 * 179.97438 * 21 17 16 23 23 N 1.34625 * 108.20462 * 0.26780 * 21 17 16 24 24 H 0.97000 * 124.80756 * 179.72202 * 23 21 17 25 25 H 1.09006 * 109.46579 * 55.59037 * 1 2 3 26 26 H 1.08995 * 109.47612 * 175.58820 * 1 2 3 27 27 H 1.08996 * 109.47263 * 295.59213 * 1 2 3 28 28 H 1.09003 * 109.46992 * 239.99977 * 2 1 3 29 29 H 1.09000 * 109.46478 * 120.00389 * 2 1 3 30 30 H 0.96996 * 119.99962 * 179.97438 * 8 7 5 31 31 H 1.00905 * 110.99929 * 209.88121 * 13 3 2 32 32 H 1.09001 * 109.47096 * 55.54403 * 14 13 3 33 33 H 1.08994 * 109.47508 * 295.53918 * 14 13 3 34 34 H 1.07997 * 126.81985 * 0.02562 * 16 15 14 35 35 H 0.96699 * 117.00522 * 180.02562 * 20 18 17 36 36 H 1.08996 * 109.46528 * 90.00290 * 22 21 17 37 37 H 1.08992 * 109.46859 * 330.00622 * 22 21 17 38 38 H 1.09001 * 109.47085 * 210.00316 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1301 1.4424 0.0031 5 6 1.5413 2.1516 -1.2326 6 1 0.9201 3.0299 -1.1362 7 6 1.8779 1.6793 -2.4834 8 7 2.6340 0.6096 -2.6008 9 14 1.2602 2.5587 -4.0114 10 1 2.2400 3.5996 -4.4135 11 1 1.0982 1.5786 -5.1151 12 1 -0.0486 3.1970 -3.7200 13 7 1.5470 2.1361 1.1974 14 6 2.4393 1.9094 2.3420 15 6 1.9632 2.7218 3.5187 16 6 1.1632 2.2749 4.5023 17 6 0.9672 3.4027 5.4205 18 6 0.1660 3.4114 6.6543 19 8 0.0908 4.4238 7.3230 20 8 -0.4847 2.2970 7.0433 21 6 1.6870 4.4521 4.8908 22 6 1.7961 5.8351 5.4796 23 7 2.2704 4.0301 3.7533 24 1 2.8316 4.5781 3.1826 25 1 -0.3633 0.5808 -0.8479 26 1 -0.3634 -1.0245 -0.0790 27 1 -0.3633 0.4439 0.9268 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.8705 0.2771 -3.4808 31 1 1.4288 3.1226 1.0208 32 1 3.4528 2.2116 2.0781 33 1 2.4322 0.8515 2.6043 34 1 0.7473 1.2828 4.5978 35 1 -0.9986 2.3513 7.8606 36 1 2.6471 5.8743 6.1595 37 1 0.8831 6.0702 6.0264 38 1 1.9371 6.5608 4.6787 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380048906.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:09:30 Heat of formation + Delta-G solvation = -83.041190 kcal Electronic energy + Delta-G solvation = -19929.920671 eV Core-core repulsion = 16771.501622 eV Total energy + Delta-G solvation = -3158.419048 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.33814 -40.51833 -38.08445 -36.88536 -34.81023 -33.11732 -32.19502 -31.87419 -29.17277 -27.47778 -25.65626 -24.92490 -23.86133 -21.52260 -20.92491 -20.59724 -18.91370 -18.53049 -17.42629 -16.89918 -16.63369 -16.55111 -15.93565 -15.66190 -15.22551 -14.93638 -14.59705 -14.38255 -14.02331 -13.95773 -13.76566 -13.38601 -13.29035 -12.98282 -12.80745 -12.67538 -12.46952 -12.41161 -12.38087 -11.94770 -11.62575 -11.45516 -11.26804 -10.78419 -10.52215 -9.90886 -9.18579 -8.92141 -8.08743 -6.20718 0.49091 1.33782 1.41757 1.45127 1.53660 2.01392 2.31138 2.43603 2.56776 3.20435 3.69109 3.84338 3.97259 4.15472 4.42287 4.51989 4.58481 4.65660 4.72356 4.78793 4.83004 4.89692 4.98528 5.08486 5.31417 5.33963 5.42865 5.58196 5.71266 5.72704 5.76374 5.83820 5.91463 5.97841 6.30801 6.45108 6.52147 6.78297 7.02032 7.19844 7.48135 8.95865 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.028900 B = 0.004037 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.615071 B = 6934.789741 C = 7373.100806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.100 4.100 3 C 0.222 3.778 4 H -0.028 1.028 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.951 3.049 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.675 5.675 14 C 0.132 3.868 15 C 0.019 3.981 16 C -0.134 4.134 17 C -0.266 4.266 18 C 0.563 3.437 19 O -0.557 6.557 20 O -0.511 6.511 21 C 0.129 3.871 22 C -0.093 4.093 23 N -0.530 5.530 24 H 0.429 0.571 25 H 0.034 0.966 26 H 0.031 0.969 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.024 0.976 30 H 0.261 0.739 31 H 0.331 0.669 32 H 0.031 0.969 33 H 0.086 0.914 34 H 0.149 0.851 35 H 0.428 0.572 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.055 6.338 14.925 16.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.139 4.139 3 C 0.114 3.886 4 H -0.010 1.010 5 C -0.561 4.561 6 H 0.074 0.926 7 C -0.180 4.180 8 N -0.554 5.554 9 Si 0.777 3.223 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.195 1.195 13 N -0.306 5.306 14 C 0.002 3.998 15 C -0.090 4.090 16 C -0.158 4.158 17 C -0.275 4.275 18 C 0.411 3.589 19 O -0.451 6.451 20 O -0.324 6.324 21 C 0.008 3.992 22 C -0.150 4.150 23 N -0.126 5.126 24 H 0.269 0.731 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.148 0.852 32 H 0.049 0.951 33 H 0.105 0.895 34 H 0.167 0.833 35 H 0.289 0.711 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.116 5.959 14.650 15.855 hybrid contribution 0.485 0.822 -1.023 1.399 sum -0.631 6.781 13.628 15.234 Atomic orbital electron populations 1.21316 0.96192 0.98275 1.00799 1.21333 0.96118 0.97732 0.98731 1.18965 0.91086 0.92123 0.86453 1.01044 1.21425 1.31404 1.11978 0.91331 0.92598 1.25567 0.95245 0.95592 1.01562 1.70006 1.37626 1.23765 1.24011 0.85662 0.78811 0.78296 0.79484 1.20303 1.21254 1.19492 1.60699 1.49123 1.15619 1.05163 1.20397 0.93427 0.98648 0.87312 1.20122 1.04573 0.84963 0.99342 1.21902 1.00730 0.98986 0.94190 1.19486 1.11970 0.96701 0.99313 1.19800 0.75763 0.79920 0.83426 1.90813 1.63755 1.34409 1.56145 1.84580 1.61660 1.38644 1.47536 1.20917 0.94460 0.96651 0.87200 1.20663 1.04978 0.87887 1.01465 1.41549 1.40259 1.10715 1.20092 0.73119 0.94721 0.94998 0.92957 0.92375 0.95717 0.93024 0.85244 0.95107 0.89529 0.83294 0.71143 0.88879 0.89444 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.69 9.52 71.98 0.69 -4.00 16 2 C -0.10 -4.70 5.59 30.60 0.17 -4.53 16 3 C 0.22 10.50 2.30 44.17 0.10 10.60 16 4 H -0.03 -1.47 7.71 -2.39 -0.02 -1.48 16 5 C -0.52 -26.97 7.26 25.60 0.19 -26.78 16 6 H 0.06 2.85 7.60 -2.91 -0.02 2.83 16 7 C 0.02 1.05 5.30 84.65 0.45 1.49 16 8 N -0.91 -50.77 11.32 21.45 0.24 -50.53 16 9 Si 0.95 42.13 29.54 68.60 2.03 44.16 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 13 N -0.68 -26.15 5.64 -499.45 -2.82 -28.97 16 14 C 0.13 4.25 6.06 85.56 0.52 4.76 16 15 C 0.02 0.53 6.58 40.98 0.27 0.80 16 16 C -0.13 -3.89 10.89 23.62 0.26 -3.64 16 17 C -0.27 -7.40 6.33 -18.82 -0.12 -7.52 16 18 C 0.56 15.07 8.32 70.15 0.58 15.65 16 19 O -0.56 -16.29 15.66 19.65 0.31 -15.99 16 20 O -0.51 -10.94 13.33 -56.91 -0.76 -11.70 16 21 C 0.13 3.04 7.22 42.04 0.30 3.34 16 22 C -0.09 -1.62 9.90 71.24 0.71 -0.91 16 23 N -0.53 -12.13 5.89 -170.37 -1.00 -13.14 16 24 H 0.43 7.57 8.96 -92.71 -0.83 6.74 16 25 H 0.03 1.62 7.07 -2.38 -0.02 1.60 16 26 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.05 2.14 7.74 -2.39 -0.02 2.12 16 28 H 0.06 3.08 6.06 -2.39 -0.01 3.06 16 29 H 0.02 1.05 7.61 -2.39 -0.02 1.03 16 30 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 31 H 0.33 12.58 8.13 -89.69 -0.73 11.85 16 32 H 0.03 0.98 7.94 -2.39 -0.02 0.96 16 33 H 0.09 2.83 7.61 -2.39 -0.02 2.82 16 34 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 35 H 0.43 4.68 9.11 -74.06 -0.67 4.00 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 37 H 0.09 1.80 6.51 -2.39 -0.02 1.79 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -63.77 320.84 0.98 -62.79 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: -1.13 Total: 24.09 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 4.11 Total: -10.73 kcal Atomic # 7 Polarization: -89.06 SS G_CDS: -3.58 Total: -92.63 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.45 Total: -27.68 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -63.77 0.98 -62.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380048906.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.251 kcal (2) G-P(sol) polarization free energy of solvation -63.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds