Wall clock time and date at job start Thu Apr 9 2020 13:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.29729 * 2 1 4 4 C 1.52935 * 109.12483 * 240.50612 * 2 1 3 5 5 C 1.53351 * 108.66186 * 189.01948 * 4 2 1 6 6 H 1.09000 * 109.67320 * 307.81229 * 5 4 2 7 7 C 1.50702 * 109.70585 * 187.29403 * 5 4 2 8 8 O 1.21289 * 119.99862 * 0.51727 * 7 5 4 9 9 N 1.34775 * 120.00108 * 180.51532 * 7 5 4 10 10 C 1.37092 * 119.99877 * 180.02562 * 9 7 5 11 11 H 1.08005 * 119.99975 * 139.40783 * 10 9 7 12 12 C 1.38953 * 119.99945 * 319.40031 * 10 9 7 13 13 N 1.31408 * 119.99756 * 158.77191 * 12 10 9 14 14 Si 1.86794 * 120.00091 * 338.77383 * 12 10 9 15 15 H 1.48498 * 109.47112 * 94.16095 * 14 12 10 16 16 H 1.48502 * 109.47222 * 214.16074 * 14 12 10 17 17 H 1.48499 * 109.47337 * 334.15910 * 14 12 10 18 18 C 1.46505 * 119.99886 * 0.02562 * 9 7 5 19 19 C 1.52993 * 117.49761 * 187.37363 * 18 9 7 20 20 C 1.52990 * 60.00334 * 252.51476 * 19 18 9 21 21 C 1.53074 * 108.42415 * 67.54059 * 5 4 2 22 22 C 1.50177 * 109.89362 * 311.10123 * 21 5 4 23 23 O 1.21272 * 118.24639 * 197.59924 * 22 21 5 24 24 N 1.33352 * 123.50378 * 17.58375 * 22 21 5 25 25 H 1.08994 * 109.46915 * 300.41243 * 1 2 3 26 26 H 1.09000 * 109.46946 * 60.41977 * 1 2 3 27 27 H 1.09005 * 109.46711 * 180.41000 * 1 2 3 28 28 H 1.08995 * 109.60036 * 69.27528 * 4 2 1 29 29 H 1.08996 * 109.62228 * 308.77359 * 4 2 1 30 30 H 0.97005 * 120.00137 * 180.02562 * 13 12 10 31 31 H 1.08997 * 115.54972 * 333.08485 * 18 9 7 32 32 H 1.09005 * 117.50076 * 0.02562 * 19 18 9 33 33 H 1.09004 * 117.50011 * 145.02140 * 19 18 9 34 34 H 1.09003 * 117.50063 * 252.51091 * 20 19 18 35 35 H 1.09003 * 117.52273 * 107.48488 * 20 19 18 36 36 H 1.09002 * 109.39405 * 71.23358 * 21 5 4 37 37 H 1.08997 * 109.39898 * 191.05863 * 21 5 4 38 38 H 0.96999 * 117.94459 * 177.77345 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8902 1.0288 0.0000 4 6 2.0311 -0.7114 -1.2577 5 6 3.5476 -0.9064 -1.1399 6 1 4.0231 0.0464 -0.9072 7 6 4.0934 -1.4422 -2.4384 8 8 3.3474 -1.6407 -3.3739 9 7 5.4105 -1.7006 -2.5603 10 6 5.9071 -2.1874 -3.7417 11 1 6.8492 -1.8220 -4.1229 12 6 5.1983 -3.1511 -4.4487 13 7 5.4209 -3.3202 -5.7327 14 14 3.9292 -4.2062 -3.5739 15 1 2.5858 -3.5915 -3.7244 16 1 3.9208 -5.5665 -4.1697 17 1 4.2721 -4.2996 -2.1320 18 6 6.3115 -1.4613 -1.4301 19 6 7.8136 -1.6080 -1.6809 20 6 7.0680 -2.6641 -0.8628 21 6 3.8206 -1.9071 -0.0142 22 6 3.0479 -1.5185 1.2135 23 8 3.3843 -1.9932 2.2776 24 7 2.0118 -0.6792 1.1962 25 1 -0.3633 0.5202 0.8862 26 1 -0.3633 0.5073 -0.8937 27 1 -0.3633 -1.0277 0.0074 28 1 1.8076 -0.1042 -2.1348 29 1 1.5435 -1.6820 -1.3480 30 1 4.9259 -3.9927 -6.2264 31 1 5.9910 -0.6916 -0.7281 32 1 8.1316 -1.8822 -2.6869 33 1 8.4817 -0.9346 -1.1439 34 1 7.2454 -2.6856 0.2125 35 1 6.8950 -3.6336 -1.3300 36 1 3.5156 -2.9036 -0.3338 37 1 4.8860 -1.9110 0.2162 38 1 1.5500 -0.5098 2.0322 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408200377.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:09:35 Heat of formation + Delta-G solvation = -34.207010 kcal Electronic energy + Delta-G solvation = -21625.768648 eV Core-core repulsion = 18469.467208 eV Total energy + Delta-G solvation = -3156.301439 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 4.15 seconds Orbital eigenvalues (eV) -40.58079 -39.00789 -36.92981 -36.25533 -33.38023 -32.80837 -31.37726 -31.03354 -27.11147 -25.81599 -23.40140 -22.31189 -21.86150 -21.34034 -19.38919 -19.02006 -17.32274 -16.91441 -16.38247 -16.03785 -15.45006 -15.07037 -14.52342 -14.25779 -14.12604 -13.46108 -13.26551 -13.18703 -13.01764 -12.82048 -12.38130 -12.21676 -11.72921 -11.58066 -11.30706 -11.09159 -10.91211 -10.88591 -10.66808 -10.31259 -10.06213 -10.04154 -9.83710 -9.63794 -9.10254 -8.57451 -8.50226 -7.53480 -6.24856 -3.99219 2.72558 3.20918 3.29802 3.42064 3.60023 3.70224 4.16814 4.43342 4.58747 4.62147 4.69632 4.77867 4.98533 5.13288 5.16510 5.24658 5.33014 5.39040 5.53916 5.56264 5.64677 5.69668 5.74668 5.83074 5.95737 6.03338 6.16676 6.18505 6.29507 6.37866 6.64960 6.79130 6.82543 7.35474 7.78782 7.90947 8.26771 8.71632 8.84545 9.37700 9.74452 10.79991 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.008485 C = 0.007000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.366092 B = 3299.206865 C = 3999.031905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 H 0.077 0.923 4 C -0.111 4.111 5 C -0.105 4.105 6 H 0.093 0.907 7 C 0.453 3.547 8 O -0.539 6.539 9 N -0.429 5.429 10 C -0.352 4.352 11 H 0.097 0.903 12 C 0.095 3.905 13 N -0.862 5.862 14 Si 0.905 3.095 15 H -0.252 1.252 16 H -0.309 1.309 17 H -0.278 1.278 18 C 0.059 3.941 19 C -0.174 4.174 20 C -0.198 4.198 21 C -0.137 4.137 22 C 0.526 3.474 23 O -0.563 6.563 24 N -0.717 5.717 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.273 0.727 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.292 6.684 11.685 14.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 H 0.095 0.905 4 C -0.149 4.149 5 C -0.127 4.127 6 H 0.111 0.889 7 C 0.243 3.757 8 O -0.421 6.421 9 N -0.149 5.149 10 C -0.477 4.477 11 H 0.115 0.885 12 C -0.115 4.115 13 N -0.496 5.496 14 Si 0.736 3.264 15 H -0.178 1.178 16 H -0.238 1.238 17 H -0.203 1.203 18 C -0.047 4.047 19 C -0.212 4.212 20 C -0.237 4.237 21 C -0.177 4.177 22 C 0.314 3.686 23 O -0.442 6.442 24 N -0.369 5.369 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.133 0.867 38 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -5.388 6.220 11.324 13.998 hybrid contribution -0.684 -0.521 0.614 1.057 sum -6.072 5.699 11.938 14.555 Atomic orbital electron populations 1.22154 0.94223 1.02991 1.02719 1.21068 0.94603 0.96246 0.85069 0.90549 1.21771 0.94033 1.02416 0.96652 1.21363 0.97097 0.99637 0.94620 0.88881 1.19943 0.83576 0.83210 0.88975 1.90552 1.56552 1.54478 1.40515 1.43131 1.04632 1.56719 1.10424 1.18755 1.09871 1.23010 0.96058 0.88503 1.25262 0.96169 0.95481 0.94577 1.69756 1.41027 1.32123 1.06692 0.86508 0.84158 0.76580 0.79198 1.17753 1.23822 1.20330 1.21887 0.90549 0.99455 0.92805 1.23158 0.93529 1.01930 1.02552 1.23316 1.05775 0.96059 0.98537 1.21949 1.02661 1.01204 0.91845 1.20234 0.79893 0.77556 0.90930 1.90726 1.67658 1.54120 1.31675 1.45678 1.32734 1.46536 1.11985 0.92214 0.90647 0.91851 0.88583 0.90581 0.91763 0.87019 0.87165 0.89422 0.89297 0.88328 0.88050 0.86697 0.77013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.39 37.16 0.35 -1.04 16 2 C 0.13 1.43 3.68 -68.37 -0.25 1.18 16 3 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.11 -1.58 3.98 -26.58 -0.11 -1.69 16 5 C -0.11 -1.73 1.79 -91.55 -0.16 -1.89 16 6 H 0.09 1.33 7.56 -51.93 -0.39 0.93 16 7 C 0.45 10.07 5.30 -10.99 -0.06 10.01 16 8 O -0.54 -14.03 11.19 5.55 0.06 -13.97 16 9 N -0.43 -9.80 2.53 -107.73 -0.27 -10.07 16 10 C -0.35 -9.50 8.76 -14.93 -0.13 -9.64 16 11 H 0.10 2.74 6.82 -52.48 -0.36 2.38 16 12 C 0.09 2.72 4.80 -17.47 -0.08 2.64 16 13 N -0.86 -25.85 13.96 55.50 0.77 -25.08 16 14 Si 0.90 23.61 24.85 -169.99 -4.22 19.39 16 15 H -0.25 -6.80 6.21 56.52 0.35 -6.45 16 16 H -0.31 -8.03 7.11 56.52 0.40 -7.63 16 17 H -0.28 -6.91 7.10 56.52 0.40 -6.51 16 18 C 0.06 1.06 4.36 -67.93 -0.30 0.76 16 19 C -0.17 -2.91 9.82 -26.74 -0.26 -3.17 16 20 C -0.20 -3.35 9.63 -26.74 -0.26 -3.61 16 21 C -0.14 -2.23 4.85 -28.10 -0.14 -2.36 16 22 C 0.53 8.13 7.71 -11.87 -0.09 8.04 16 23 O -0.56 -10.47 17.78 5.56 0.10 -10.38 16 24 N -0.72 -8.59 5.12 -54.85 -0.28 -8.87 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.10 1.40 7.90 -51.93 -0.41 0.99 16 29 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 30 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 31 H 0.11 1.70 6.13 -51.93 -0.32 1.38 16 32 H 0.11 2.10 6.43 -51.93 -0.33 1.77 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 36 H 0.10 1.83 8.09 -51.93 -0.42 1.41 16 37 H 0.12 1.83 4.89 -51.93 -0.25 1.57 16 38 H 0.39 4.07 8.67 -40.82 -0.35 3.72 16 LS Contribution 299.81 15.07 4.52 4.52 Total: -1.00 -33.57 299.81 -6.22 -39.79 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.41 Total: 5.43 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -1.49 Total: -0.76 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.22 Total: -44.02 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: 0.16 Total: -24.34 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -4.22 Total: 19.39 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.57 -6.22 -39.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408200377.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.581 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.15 seconds