Wall clock time and date at job start Thu Apr 9 2020 13:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.29729 * 2 1 4 4 C 1.52935 * 109.12483 * 240.50612 * 2 1 3 5 5 C 1.53351 * 108.66186 * 189.01948 * 4 2 1 6 6 H 1.09000 * 109.67320 * 307.81229 * 5 4 2 7 7 C 1.50702 * 109.70585 * 187.29403 * 5 4 2 8 8 O 1.21289 * 119.99862 * 0.51727 * 7 5 4 9 9 N 1.34775 * 120.00108 * 180.51532 * 7 5 4 10 10 C 1.37092 * 119.99877 * 180.02562 * 9 7 5 11 11 H 1.08005 * 119.99975 * 139.40783 * 10 9 7 12 12 C 1.38953 * 119.99945 * 319.40031 * 10 9 7 13 13 N 1.31408 * 119.99756 * 158.77191 * 12 10 9 14 14 Si 1.86794 * 120.00091 * 338.77383 * 12 10 9 15 15 H 1.48498 * 109.47112 * 94.16095 * 14 12 10 16 16 H 1.48502 * 109.47222 * 214.16074 * 14 12 10 17 17 H 1.48499 * 109.47337 * 334.15910 * 14 12 10 18 18 C 1.46505 * 119.99886 * 0.02562 * 9 7 5 19 19 C 1.52993 * 117.49761 * 187.37363 * 18 9 7 20 20 C 1.52990 * 60.00334 * 252.51476 * 19 18 9 21 21 C 1.53074 * 108.42415 * 67.54059 * 5 4 2 22 22 C 1.50177 * 109.89362 * 311.10123 * 21 5 4 23 23 O 1.21272 * 118.24639 * 197.59924 * 22 21 5 24 24 N 1.33352 * 123.50378 * 17.58375 * 22 21 5 25 25 H 1.08994 * 109.46915 * 300.41243 * 1 2 3 26 26 H 1.09000 * 109.46946 * 60.41977 * 1 2 3 27 27 H 1.09005 * 109.46711 * 180.41000 * 1 2 3 28 28 H 1.08995 * 109.60036 * 69.27528 * 4 2 1 29 29 H 1.08996 * 109.62228 * 308.77359 * 4 2 1 30 30 H 0.97005 * 120.00137 * 180.02562 * 13 12 10 31 31 H 1.08997 * 115.54972 * 333.08485 * 18 9 7 32 32 H 1.09005 * 117.50076 * 0.02562 * 19 18 9 33 33 H 1.09004 * 117.50011 * 145.02140 * 19 18 9 34 34 H 1.09003 * 117.50063 * 252.51091 * 20 19 18 35 35 H 1.09003 * 117.52273 * 107.48488 * 20 19 18 36 36 H 1.09002 * 109.39405 * 71.23358 * 21 5 4 37 37 H 1.08997 * 109.39898 * 191.05863 * 21 5 4 38 38 H 0.96999 * 117.94459 * 177.77345 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8902 1.0288 0.0000 4 6 2.0311 -0.7114 -1.2577 5 6 3.5476 -0.9064 -1.1399 6 1 4.0231 0.0464 -0.9072 7 6 4.0934 -1.4422 -2.4384 8 8 3.3474 -1.6407 -3.3739 9 7 5.4105 -1.7006 -2.5603 10 6 5.9071 -2.1874 -3.7417 11 1 6.8492 -1.8220 -4.1229 12 6 5.1983 -3.1511 -4.4487 13 7 5.4209 -3.3202 -5.7327 14 14 3.9292 -4.2062 -3.5739 15 1 2.5858 -3.5915 -3.7244 16 1 3.9208 -5.5665 -4.1697 17 1 4.2721 -4.2996 -2.1320 18 6 6.3115 -1.4613 -1.4301 19 6 7.8136 -1.6080 -1.6809 20 6 7.0680 -2.6641 -0.8628 21 6 3.8206 -1.9071 -0.0142 22 6 3.0479 -1.5185 1.2135 23 8 3.3843 -1.9932 2.2776 24 7 2.0118 -0.6792 1.1962 25 1 -0.3633 0.5202 0.8862 26 1 -0.3633 0.5073 -0.8937 27 1 -0.3633 -1.0277 0.0074 28 1 1.8076 -0.1042 -2.1348 29 1 1.5435 -1.6820 -1.3480 30 1 4.9259 -3.9927 -6.2264 31 1 5.9910 -0.6916 -0.7281 32 1 8.1316 -1.8822 -2.6869 33 1 8.4817 -0.9346 -1.1439 34 1 7.2454 -2.6856 0.2125 35 1 6.8950 -3.6336 -1.3300 36 1 3.5156 -2.9036 -0.3338 37 1 4.8860 -1.9110 0.2162 38 1 1.5500 -0.5098 2.0322 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408200377.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:09:32 Heat of formation + Delta-G solvation = -59.035605 kcal Electronic energy + Delta-G solvation = -21626.845296 eV Core-core repulsion = 18469.467208 eV Total energy + Delta-G solvation = -3157.378088 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.91285 -40.55343 -38.30595 -37.64564 -35.07255 -34.38500 -33.24541 -32.05891 -28.17669 -27.64049 -24.90667 -23.42995 -23.17697 -22.82649 -21.08083 -20.26867 -18.87574 -18.19982 -18.00276 -17.27571 -17.21681 -16.32836 -15.96879 -15.83769 -15.41503 -15.13034 -14.88201 -14.75785 -14.39419 -14.21260 -13.70606 -13.45689 -13.15583 -13.00736 -12.61723 -12.42080 -12.37575 -12.21440 -12.13271 -11.97044 -11.82160 -11.59391 -11.22540 -11.14683 -10.74165 -10.27618 -10.10697 -9.39215 -8.44071 -6.15034 1.18008 1.30163 1.45181 1.53473 1.87205 2.26659 2.38534 2.56148 2.93971 3.22000 3.41314 3.60380 3.66101 3.75269 4.00135 4.09653 4.14616 4.17340 4.25775 4.32218 4.46991 4.58363 4.70035 4.87475 4.89160 4.93655 4.99770 5.08372 5.19823 5.23116 5.35224 5.44633 5.68674 5.84124 5.85951 6.26605 6.74004 6.89086 7.16249 7.34347 7.85854 8.64380 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.008485 C = 0.007000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.366092 B = 3299.206865 C = 3999.031905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.142 3.858 3 H 0.107 0.893 4 C -0.112 4.112 5 C -0.094 4.094 6 H 0.128 0.872 7 C 0.450 3.550 8 O -0.582 6.582 9 N -0.446 5.446 10 C -0.339 4.339 11 H 0.074 0.926 12 C 0.047 3.953 13 N -0.908 5.908 14 Si 0.951 3.049 15 H -0.269 1.269 16 H -0.312 1.312 17 H -0.263 1.263 18 C 0.043 3.957 19 C -0.167 4.167 20 C -0.190 4.190 21 C -0.133 4.133 22 C 0.532 3.468 23 O -0.596 6.596 24 N -0.700 5.700 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.271 0.729 31 H 0.152 0.848 32 H 0.077 0.923 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.939 8.698 14.917 18.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.038 3.962 3 H 0.125 0.875 4 C -0.150 4.150 5 C -0.116 4.116 6 H 0.145 0.855 7 C 0.241 3.759 8 O -0.467 6.467 9 N -0.166 5.166 10 C -0.466 4.466 11 H 0.092 0.908 12 C -0.157 4.157 13 N -0.546 5.546 14 Si 0.781 3.219 15 H -0.195 1.195 16 H -0.241 1.241 17 H -0.187 1.187 18 C -0.061 4.061 19 C -0.205 4.205 20 C -0.229 4.229 21 C -0.172 4.172 22 C 0.319 3.681 23 O -0.478 6.478 24 N -0.352 5.352 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.169 0.831 32 H 0.096 0.904 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.140 0.860 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -6.040 8.258 14.590 17.820 hybrid contribution -0.464 -1.042 -0.399 1.208 sum -6.504 7.217 14.191 17.198 Atomic orbital electron populations 1.22144 0.92309 1.02875 1.04434 1.21173 0.96011 0.96608 0.82377 0.87503 1.21793 0.92430 1.01930 0.98842 1.21357 0.98498 1.00654 0.91065 0.85471 1.21002 0.82927 0.81446 0.90517 1.90521 1.57662 1.55809 1.42695 1.43310 1.05816 1.56788 1.10691 1.18665 1.08534 1.21716 0.97715 0.90833 1.25856 0.97912 0.96974 0.94992 1.69839 1.43087 1.33751 1.07900 0.85750 0.81751 0.75157 0.79212 1.19534 1.24148 1.18739 1.22263 0.90435 1.01320 0.92075 1.23195 0.93338 1.02505 1.01450 1.23336 1.04914 0.94211 1.00403 1.21855 1.03407 0.99900 0.92086 1.19929 0.80456 0.77911 0.89780 1.90723 1.68932 1.55685 1.32464 1.45587 1.31375 1.45128 1.13138 0.89709 0.89746 0.92967 0.88893 0.92659 0.91942 0.83099 0.90439 0.85292 0.85553 0.91354 0.90338 0.86011 0.75470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.39 71.98 0.68 -1.41 16 2 C 0.14 2.41 3.68 45.11 0.17 2.58 16 3 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.11 -2.94 3.98 30.69 0.12 -2.81 16 5 C -0.09 -2.84 1.79 -11.40 -0.02 -2.86 16 6 H 0.13 3.02 7.56 -2.39 -0.02 3.00 16 7 C 0.45 19.62 5.30 87.66 0.46 20.08 16 8 O -0.58 -30.64 11.19 -3.06 -0.03 -30.67 16 9 N -0.45 -20.12 2.53 -613.14 -1.55 -21.68 16 10 C -0.34 -18.83 8.76 84.04 0.74 -18.09 16 11 H 0.07 4.34 6.82 -2.91 -0.02 4.32 16 12 C 0.05 2.79 4.80 84.93 0.41 3.20 16 13 N -0.91 -56.95 13.96 21.66 0.30 -56.65 16 14 Si 0.95 50.36 24.85 68.60 1.70 52.07 16 15 H -0.27 -14.83 6.21 99.48 0.62 -14.21 16 16 H -0.31 -16.38 7.11 99.48 0.71 -15.67 16 17 H -0.26 -12.98 7.10 99.48 0.71 -12.27 16 18 C 0.04 1.45 4.36 44.99 0.20 1.65 16 19 C -0.17 -5.24 9.82 30.59 0.30 -4.94 16 20 C -0.19 -5.98 9.63 30.59 0.29 -5.68 16 21 C -0.13 -3.97 4.85 29.71 0.14 -3.82 16 22 C 0.53 14.75 7.71 87.71 0.68 15.43 16 23 O -0.60 -20.57 17.78 -3.00 -0.05 -20.62 16 24 N -0.70 -13.97 5.12 -446.63 -2.29 -16.25 16 25 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.09 2.53 7.90 -2.39 -0.02 2.51 16 29 H 0.05 1.68 8.10 -2.39 -0.02 1.66 16 30 H 0.27 16.18 8.31 -92.70 -0.77 15.41 16 31 H 0.15 3.86 6.13 -2.39 -0.01 3.85 16 32 H 0.08 2.97 6.43 -2.38 -0.02 2.96 16 33 H 0.13 2.98 8.14 -2.38 -0.02 2.96 16 34 H 0.13 3.05 8.14 -2.39 -0.02 3.03 16 35 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.08 2.74 8.09 -2.39 -0.02 2.72 16 37 H 0.12 3.45 4.89 -2.39 -0.01 3.44 16 38 H 0.41 6.63 8.67 -92.71 -0.80 5.83 16 Total: -1.00 -76.99 299.81 2.43 -74.56 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.18 Total: 15.93 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 4.16 Total: 3.31 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -3.54 Total: -94.58 kcal Atomic # 8 Polarization: -51.21 SS G_CDS: -0.09 Total: -51.29 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 1.70 Total: 52.07 kcal Total: -76.99 2.43 -74.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408200377.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.528 kcal (2) G-P(sol) polarization free energy of solvation -76.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds